Wall clock time and date at job start Wed Apr 1 2020 05:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33463 * 125.49893 * 2 1 4 4 C 1.30327 * 109.72900 * 179.97438 * 3 2 1 5 5 N 1.34679 * 108.04460 * 0.08015 * 4 3 2 6 6 N 1.30970 * 125.49366 * 180.02562 * 2 1 3 7 7 C 1.46292 * 125.05144 * 179.84920 * 5 4 3 8 8 C 1.53301 * 108.77294 * 342.98618 * 7 5 4 9 9 H 1.09006 * 109.46237 * 290.13609 * 8 7 5 10 10 C 1.50694 * 109.47158 * 170.14533 * 8 7 5 11 11 O 1.21279 * 120.00146 * 239.98157 * 10 8 7 12 12 N 1.34777 * 120.00250 * 59.98040 * 10 8 7 13 13 C 1.46493 * 120.00096 * 180.27723 * 12 10 8 14 14 C 1.53002 * 109.46322 * 59.75375 * 13 12 10 15 15 C 1.53040 * 109.46358 * 299.79324 * 13 12 10 16 16 C 1.53201 * 109.31247 * 301.34872 * 15 13 12 17 17 N 1.46927 * 108.77154 * 305.35858 * 16 15 13 18 18 C 1.36931 * 120.63360 * 233.58606 * 17 16 15 19 19 H 1.08005 * 119.99575 * 27.69715 * 18 17 16 20 20 C 1.38810 * 120.00076 * 207.69644 * 18 17 16 21 21 N 1.31612 * 120.00312 * 17.36691 * 20 18 17 22 22 Si 1.86810 * 119.99772 * 197.36485 * 20 18 17 23 23 H 1.48499 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46996 * 119.99812 * 22 20 18 25 25 H 1.48494 * 109.47079 * 240.00120 * 22 20 18 26 26 C 1.46928 * 118.73756 * 53.61095 * 17 16 15 27 27 C 1.53048 * 109.46144 * 179.72607 * 13 12 10 28 28 C 1.53160 * 109.48812 * 50.13465 * 8 7 5 29 29 C 1.50931 * 127.90877 * 180.08294 * 4 3 2 30 30 H 1.09004 * 109.47705 * 90.01998 * 1 2 3 31 31 H 1.08999 * 109.47430 * 210.02569 * 1 2 3 32 32 H 1.09002 * 109.47094 * 330.01895 * 1 2 3 33 33 H 1.09003 * 109.58960 * 223.19399 * 7 5 4 34 34 H 1.09006 * 109.58427 * 102.76973 * 7 5 4 35 35 H 0.97002 * 119.99662 * 0.02562 * 12 10 8 36 36 H 1.09001 * 109.47164 * 59.99795 * 14 13 12 37 37 H 1.08995 * 109.47232 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.46726 * 300.00244 * 14 13 12 39 39 H 1.09003 * 109.49853 * 61.29410 * 15 13 12 40 40 H 1.08993 * 109.50305 * 181.39245 * 15 13 12 41 41 H 1.08999 * 109.58794 * 185.57685 * 16 15 13 42 42 H 1.08999 * 109.58489 * 65.14741 * 16 15 13 43 43 H 0.97002 * 120.00091 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58537 * 186.60428 * 26 17 16 45 45 H 1.09002 * 109.58828 * 66.17168 * 26 17 16 46 46 H 1.09000 * 109.49279 * 178.60341 * 27 13 12 47 47 H 1.08995 * 109.49141 * 298.66951 * 27 13 12 48 48 H 1.08999 * 109.50238 * 50.75344 * 28 8 7 49 49 H 1.08995 * 109.50872 * 170.88563 * 28 8 7 50 50 H 1.08999 * 109.71931 * 44.39620 * 29 4 3 51 51 H 1.09004 * 109.74929 * 283.77436 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5896 -0.6134 -0.0009 6 7 2.2674 -1.0663 -0.0005 7 6 4.8196 -1.4053 -0.0040 8 6 5.9850 -0.5051 -0.4300 9 1 5.8838 -0.2553 -1.4862 10 6 7.2872 -1.2303 -0.2080 11 8 8.1199 -0.7657 0.5415 12 7 7.5265 -2.3951 -0.8423 13 6 8.7899 -3.1031 -0.6218 14 6 8.9278 -3.4496 0.8621 15 6 9.9567 -2.2086 -1.0467 16 6 9.7971 -1.8355 -2.5240 17 7 9.6643 -3.0687 -3.3115 18 6 10.4871 -3.3063 -4.3800 19 1 11.4772 -2.8754 -4.4053 20 6 10.0487 -4.1007 -5.4304 21 7 8.7639 -4.3435 -5.5803 22 14 11.2825 -4.8252 -6.6316 23 1 12.6538 -4.4059 -6.2457 24 1 11.1915 -6.3072 -6.6009 25 1 10.9830 -4.3391 -8.0023 26 6 8.6315 -4.0421 -2.9311 27 6 8.8041 -4.3905 -1.4493 28 6 5.9683 0.7805 0.4023 29 6 4.7522 1.6263 0.0025 30 1 -0.3635 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 4.7203 -2.2320 -0.7075 34 1 5.0058 -1.7950 0.9969 35 1 6.8607 -2.7665 -1.4420 36 1 8.0967 -4.0863 1.1654 37 1 9.8680 -3.9760 1.0264 38 1 8.9172 -2.5328 1.4518 39 1 9.9598 -1.3024 -0.4410 40 1 10.8956 -2.7440 -0.9061 41 1 10.6745 -1.2815 -2.8578 42 1 8.9049 -1.2225 -2.6517 43 1 8.4576 -4.8990 -6.3141 44 1 8.7399 -4.9440 -3.5335 45 1 7.6443 -3.6090 -3.0920 46 1 9.7540 -4.9052 -1.3049 47 1 7.9873 -5.0374 -1.1296 48 1 5.9039 0.5280 1.4607 49 1 6.8816 1.3459 0.2173 50 1 4.6138 2.4341 0.7211 51 1 4.9051 2.0425 -0.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045512894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:24 Heat of formation + Delta-G solvation = 64.713009 kcal Electronic energy + Delta-G solvation = -31989.330827 eV Core-core repulsion = 27925.582965 eV Total energy + Delta-G solvation = -4063.747862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.54079 -40.48082 -38.06994 -36.54001 -34.54415 -33.45892 -32.56646 -31.82716 -30.94567 -30.03026 -29.64424 -28.48386 -27.50452 -24.63001 -24.21971 -23.64308 -22.37977 -21.44880 -20.89969 -20.48348 -19.54301 -18.80556 -17.49735 -16.83852 -16.83571 -16.29909 -15.59576 -15.04602 -14.91547 -14.69529 -14.46632 -14.31551 -14.21447 -13.88566 -13.54535 -13.41652 -13.35175 -13.20505 -13.05064 -12.79447 -12.63795 -12.40888 -12.15194 -11.91744 -11.89112 -11.71405 -11.47951 -11.37851 -11.28005 -11.16138 -11.01250 -10.78802 -10.42984 -10.34870 -10.19717 -9.94538 -9.91350 -9.87059 -9.71510 -9.45574 -9.26423 -8.78990 -8.53313 -6.74032 -5.86410 -3.27617 1.43071 1.98292 2.64017 2.69861 3.20460 3.32335 3.41074 3.43027 3.69536 3.96004 4.24974 4.31515 4.44540 4.49635 4.62846 4.83709 4.92659 4.97183 5.08503 5.21090 5.25153 5.29163 5.33150 5.35219 5.40341 5.44600 5.53297 5.54016 5.63437 5.66258 5.81695 5.89538 5.96036 6.09491 6.16804 6.19122 6.24387 6.28713 6.31680 6.44610 6.56485 6.58251 6.60044 6.74086 6.85569 6.95705 7.20527 7.50013 7.67791 7.74637 7.96257 8.29333 8.37775 9.14439 9.77896 10.34167 11.22156 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002745 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.903352 B =10199.384513 C =11087.843572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.540 5.540 4 C 0.281 3.719 5 N -0.374 5.374 6 N -0.314 5.314 7 C 0.140 3.860 8 C -0.128 4.128 9 H 0.112 0.888 10 C 0.528 3.472 11 O -0.530 6.530 12 N -0.706 5.706 13 C 0.184 3.816 14 C -0.161 4.161 15 C -0.143 4.143 16 C 0.151 3.849 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.172 3.828 27 C -0.147 4.147 28 C -0.105 4.105 29 C -0.043 4.043 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.253 0.747 44 H 0.090 0.910 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 7.251 13.457 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.269 5.269 4 C 0.005 3.995 5 N -0.165 5.165 6 N -0.143 5.143 7 C 0.017 3.983 8 C -0.150 4.150 9 H 0.130 0.870 10 C 0.311 3.689 11 O -0.407 6.407 12 N -0.356 5.356 13 C 0.099 3.901 14 C -0.219 4.219 15 C -0.183 4.183 16 C 0.024 3.976 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.046 3.954 27 C -0.186 4.186 28 C -0.144 4.144 29 C -0.082 4.082 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.032 0.968 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.120 0.880 50 H 0.126 0.874 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.207 6.985 13.844 18.564 hybrid contribution 0.435 -0.795 -1.146 1.461 sum -9.772 6.191 12.699 17.178 Atomic orbital electron populations 1.20068 0.83908 1.03879 1.03700 1.24419 0.98244 0.85566 0.98476 1.70177 0.99859 1.30828 1.25989 1.24359 0.95041 0.83991 0.96149 1.50116 1.05560 1.05874 1.54905 1.77952 0.86486 1.22514 1.27330 1.21741 0.78463 0.93745 1.04302 1.21795 0.92662 0.96740 1.03851 0.86971 1.19801 0.87493 0.81108 0.80461 1.90649 1.46812 1.66135 1.37107 1.46236 1.20334 1.22522 1.46545 1.20318 0.83008 0.92502 0.94296 1.22230 1.01314 1.02133 0.96213 1.22402 0.96802 0.99891 0.99161 1.20832 0.98189 0.89240 0.89300 1.44051 1.39375 1.15964 1.31973 1.19234 0.94309 1.28760 0.95660 0.91659 1.25014 0.95534 1.02228 0.96893 1.70018 1.12128 1.40802 1.31904 0.86245 0.80952 0.78892 0.80826 1.20265 1.21567 1.21754 1.20741 0.90367 0.95226 0.89083 1.22539 1.01831 0.94575 0.99692 1.21558 0.98571 0.94050 1.00196 1.20475 0.86682 0.96000 1.05059 0.89882 0.90094 0.89662 0.87941 0.88834 0.76429 0.93337 0.92110 0.90891 0.90849 0.91751 0.93068 0.96858 0.93713 0.89203 0.96751 0.90909 0.92730 0.90266 0.88040 0.87443 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.21 2.74 8.15 -156.44 -1.27 1.47 16 3 N -0.54 -7.21 11.18 -8.03 -0.09 -7.30 16 4 C 0.28 3.34 7.72 -155.78 -1.20 2.14 16 5 N -0.37 -4.61 4.04 -58.29 -0.24 -4.85 16 6 N -0.31 -4.36 12.74 32.50 0.41 -3.95 16 7 C 0.14 1.41 6.42 -4.00 -0.03 1.39 16 8 C -0.13 -1.27 2.54 -91.54 -0.23 -1.50 16 9 H 0.11 1.10 8.12 -51.93 -0.42 0.68 16 10 C 0.53 6.68 6.56 -10.99 -0.07 6.61 16 11 O -0.53 -7.97 12.05 5.56 0.07 -7.91 16 12 N -0.71 -9.49 4.00 -47.57 -0.19 -9.68 16 13 C 0.18 2.79 0.66 -131.78 -0.09 2.71 16 14 C -0.16 -2.19 8.40 37.16 0.31 -1.88 16 15 C -0.14 -2.46 4.67 -26.61 -0.12 -2.58 16 16 C 0.15 3.05 6.26 -3.71 -0.02 3.03 16 17 N -0.59 -13.88 2.99 -172.31 -0.52 -14.40 16 18 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 19 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -25.09 11.19 55.49 0.62 -24.47 16 22 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 3.69 5.04 -3.71 -0.02 3.67 16 27 C -0.15 -2.47 4.96 -26.61 -0.13 -2.60 16 28 C -0.11 -0.93 4.68 -26.43 -0.12 -1.05 16 29 C -0.04 -0.35 6.33 -27.55 -0.17 -0.53 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 34 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.40 5.13 6.92 -40.82 -0.28 4.85 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.06 6.16 -51.93 -0.32 0.74 16 39 H 0.07 1.26 6.21 -51.93 -0.32 0.94 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 42 H 0.01 0.28 7.74 -51.93 -0.40 -0.13 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 45 H 0.01 0.31 6.94 -51.93 -0.36 -0.05 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.10 0.90 7.80 -51.93 -0.41 0.49 16 50 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -32.20 392.07 -10.35 -42.55 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.27 Total: 3.99 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -3.03 Total: 3.98 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.00 Total: -64.64 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.20 -10.35 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045512894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.260 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds