Wall clock time and date at job start Wed Apr 1 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33463 * 125.49893 * 2 1 4 4 C 1.30327 * 109.72900 * 179.97438 * 3 2 1 5 5 N 1.34679 * 108.04460 * 0.08015 * 4 3 2 6 6 N 1.30970 * 125.49366 * 180.02562 * 2 1 3 7 7 C 1.46292 * 125.05144 * 179.84920 * 5 4 3 8 8 C 1.53301 * 108.77294 * 342.98618 * 7 5 4 9 9 H 1.09006 * 109.46237 * 290.13609 * 8 7 5 10 10 C 1.50694 * 109.47158 * 170.14533 * 8 7 5 11 11 O 1.21279 * 120.00146 * 239.98157 * 10 8 7 12 12 N 1.34777 * 120.00250 * 59.98040 * 10 8 7 13 13 C 1.46493 * 120.00096 * 180.27723 * 12 10 8 14 14 C 1.53002 * 109.46322 * 59.75375 * 13 12 10 15 15 C 1.53040 * 109.46358 * 299.79324 * 13 12 10 16 16 C 1.53201 * 109.31247 * 301.34872 * 15 13 12 17 17 N 1.46927 * 108.77154 * 305.35858 * 16 15 13 18 18 C 1.36931 * 120.63360 * 233.58606 * 17 16 15 19 19 H 1.08005 * 119.99575 * 27.69715 * 18 17 16 20 20 C 1.38810 * 120.00076 * 207.69644 * 18 17 16 21 21 N 1.31612 * 120.00312 * 17.36691 * 20 18 17 22 22 Si 1.86810 * 119.99772 * 197.36485 * 20 18 17 23 23 H 1.48499 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46996 * 119.99812 * 22 20 18 25 25 H 1.48494 * 109.47079 * 240.00120 * 22 20 18 26 26 C 1.46928 * 118.73756 * 53.61095 * 17 16 15 27 27 C 1.53048 * 109.46144 * 179.72607 * 13 12 10 28 28 C 1.53160 * 109.48812 * 50.13465 * 8 7 5 29 29 C 1.50931 * 127.90877 * 180.08294 * 4 3 2 30 30 H 1.09004 * 109.47705 * 90.01998 * 1 2 3 31 31 H 1.08999 * 109.47430 * 210.02569 * 1 2 3 32 32 H 1.09002 * 109.47094 * 330.01895 * 1 2 3 33 33 H 1.09003 * 109.58960 * 223.19399 * 7 5 4 34 34 H 1.09006 * 109.58427 * 102.76973 * 7 5 4 35 35 H 0.97002 * 119.99662 * 0.02562 * 12 10 8 36 36 H 1.09001 * 109.47164 * 59.99795 * 14 13 12 37 37 H 1.08995 * 109.47232 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.46726 * 300.00244 * 14 13 12 39 39 H 1.09003 * 109.49853 * 61.29410 * 15 13 12 40 40 H 1.08993 * 109.50305 * 181.39245 * 15 13 12 41 41 H 1.08999 * 109.58794 * 185.57685 * 16 15 13 42 42 H 1.08999 * 109.58489 * 65.14741 * 16 15 13 43 43 H 0.97002 * 120.00091 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58537 * 186.60428 * 26 17 16 45 45 H 1.09002 * 109.58828 * 66.17168 * 26 17 16 46 46 H 1.09000 * 109.49279 * 178.60341 * 27 13 12 47 47 H 1.08995 * 109.49141 * 298.66951 * 27 13 12 48 48 H 1.08999 * 109.50238 * 50.75344 * 28 8 7 49 49 H 1.08995 * 109.50872 * 170.88563 * 28 8 7 50 50 H 1.08999 * 109.71931 * 44.39620 * 29 4 3 51 51 H 1.09004 * 109.74929 * 283.77436 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5896 -0.6134 -0.0009 6 7 2.2674 -1.0663 -0.0005 7 6 4.8196 -1.4053 -0.0040 8 6 5.9850 -0.5051 -0.4300 9 1 5.8838 -0.2553 -1.4862 10 6 7.2872 -1.2303 -0.2080 11 8 8.1199 -0.7657 0.5415 12 7 7.5265 -2.3951 -0.8423 13 6 8.7899 -3.1031 -0.6218 14 6 8.9278 -3.4496 0.8621 15 6 9.9567 -2.2086 -1.0467 16 6 9.7971 -1.8355 -2.5240 17 7 9.6643 -3.0687 -3.3115 18 6 10.4871 -3.3063 -4.3800 19 1 11.4772 -2.8754 -4.4053 20 6 10.0487 -4.1007 -5.4304 21 7 8.7639 -4.3435 -5.5803 22 14 11.2825 -4.8252 -6.6316 23 1 12.6538 -4.4059 -6.2457 24 1 11.1915 -6.3072 -6.6009 25 1 10.9830 -4.3391 -8.0023 26 6 8.6315 -4.0421 -2.9311 27 6 8.8041 -4.3905 -1.4493 28 6 5.9683 0.7805 0.4023 29 6 4.7522 1.6263 0.0025 30 1 -0.3635 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 4.7203 -2.2320 -0.7075 34 1 5.0058 -1.7950 0.9969 35 1 6.8607 -2.7665 -1.4420 36 1 8.0967 -4.0863 1.1654 37 1 9.8680 -3.9760 1.0264 38 1 8.9172 -2.5328 1.4518 39 1 9.9598 -1.3024 -0.4410 40 1 10.8956 -2.7440 -0.9061 41 1 10.6745 -1.2815 -2.8578 42 1 8.9049 -1.2225 -2.6517 43 1 8.4576 -4.8990 -6.3141 44 1 8.7399 -4.9440 -3.5335 45 1 7.6443 -3.6090 -3.0920 46 1 9.7540 -4.9052 -1.3049 47 1 7.9873 -5.0374 -1.1296 48 1 5.9039 0.5280 1.4607 49 1 6.8816 1.3459 0.2173 50 1 4.6138 2.4341 0.7211 51 1 4.9051 2.0425 -0.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045512894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:23 Heat of formation + Delta-G solvation = 46.027836 kcal Electronic energy + Delta-G solvation = -31990.141077 eV Core-core repulsion = 27925.582965 eV Total energy + Delta-G solvation = -4064.558112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.42732 -41.61690 -39.32288 -37.56462 -36.10603 -34.32159 -33.78735 -33.09614 -32.26274 -31.59308 -30.54533 -29.30109 -29.04307 -25.94004 -25.43824 -24.58863 -23.92468 -22.74599 -22.00816 -21.56675 -20.41052 -20.15740 -18.82688 -18.30155 -17.74580 -17.19573 -16.85286 -16.59307 -16.14330 -15.76331 -15.57527 -15.37316 -15.25409 -15.13987 -15.04940 -14.77916 -14.55469 -14.21945 -14.09231 -13.87376 -13.51835 -13.37748 -13.29213 -13.10365 -13.03404 -12.89872 -12.77670 -12.64280 -12.60348 -12.54312 -12.23014 -12.14619 -11.98317 -11.95018 -11.75229 -11.36586 -11.29392 -11.12571 -10.78707 -10.56246 -10.49987 -10.32741 -9.95598 -8.65692 -7.88170 -5.31230 0.53697 1.12375 1.44508 1.48013 1.57093 1.63785 1.80003 2.17187 2.50740 2.92685 3.13442 3.26888 3.42606 3.49193 3.71307 3.72273 3.80553 3.87077 4.03652 4.08475 4.15126 4.20705 4.24445 4.38602 4.49989 4.52268 4.65868 4.73046 4.74070 4.75754 4.81558 4.88315 4.91514 4.93218 4.94359 4.96424 5.00017 5.11023 5.17463 5.22790 5.30130 5.32610 5.38217 5.46476 5.49944 5.64373 5.67668 5.75246 5.77841 6.39295 6.60404 7.05628 7.16265 7.24012 7.87386 8.37783 9.17358 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002745 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.903352 B =10199.384513 C =11087.843572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.564 5.564 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.346 5.346 7 C 0.141 3.859 8 C -0.116 4.116 9 H 0.116 0.884 10 C 0.532 3.468 11 O -0.550 6.550 12 N -0.707 5.707 13 C 0.188 3.812 14 C -0.151 4.151 15 C -0.131 4.131 16 C 0.152 3.848 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.060 0.940 20 C -0.046 4.046 21 N -0.929 5.929 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.294 1.294 26 C 0.178 3.822 27 C -0.133 4.133 28 C -0.098 4.098 29 C -0.036 4.036 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.404 0.596 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.012 0.988 43 H 0.249 0.751 44 H 0.054 0.946 45 H 0.008 0.992 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.126 0.874 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 7.668 14.629 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 N -0.293 5.293 4 C 0.000 4.000 5 N -0.171 5.171 6 N -0.176 5.176 7 C 0.019 3.981 8 C -0.139 4.139 9 H 0.134 0.866 10 C 0.317 3.683 11 O -0.428 6.428 12 N -0.358 5.358 13 C 0.103 3.897 14 C -0.209 4.209 15 C -0.171 4.171 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.390 4.390 19 H 0.077 0.923 20 C -0.241 4.241 21 N -0.575 5.575 22 Si 0.789 3.211 23 H -0.195 1.195 24 H -0.216 1.216 25 H -0.221 1.221 26 C 0.053 3.947 27 C -0.172 4.172 28 C -0.136 4.136 29 C -0.075 4.075 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.123 0.877 50 H 0.144 0.856 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.458 7.409 15.040 19.760 hybrid contribution 0.514 -0.864 -1.514 1.817 sum -9.944 6.545 13.525 18.018 Atomic orbital electron populations 1.20234 0.81484 1.04975 1.04709 1.25186 0.99837 0.85193 0.97456 1.70204 1.00621 1.31395 1.27099 1.25008 0.95697 0.84270 0.95000 1.50212 1.05571 1.06285 1.55081 1.77888 0.87306 1.23581 1.28784 1.21795 0.77818 0.93654 1.04802 1.21692 0.90986 0.96882 1.04330 0.86614 1.20116 0.88049 0.80548 0.79589 1.90644 1.47774 1.66499 1.37927 1.46203 1.19764 1.22926 1.46879 1.20167 0.83043 0.91291 0.95209 1.22118 1.02358 1.02177 0.94226 1.22249 0.97650 1.00441 0.96721 1.20871 0.97559 0.88081 0.90818 1.44277 1.39409 1.17522 1.31804 1.19468 0.94576 1.28486 0.96506 0.92254 1.25652 0.96958 1.02964 0.98552 1.70144 1.13454 1.41494 1.32416 0.85320 0.79343 0.77870 0.78577 1.19538 1.21589 1.22131 1.20584 0.89503 0.93190 0.91442 1.22337 1.02533 0.95848 0.96507 1.21513 0.98890 0.93426 0.99813 1.20615 0.84832 0.95665 1.06406 0.88798 0.89054 0.88475 0.87565 0.88239 0.75996 0.91747 0.91524 0.91513 0.90455 0.92239 0.94128 0.97012 0.94160 0.92808 0.97376 0.91526 0.90145 0.90419 0.87718 0.85631 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.85 10.51 71.23 0.75 -0.10 16 2 C 0.20 5.07 8.15 138.49 1.13 6.19 16 3 N -0.56 -14.47 11.18 -179.32 -2.01 -16.47 16 4 C 0.28 6.20 7.72 138.37 1.07 7.26 16 5 N -0.38 -9.00 4.04 -338.34 -1.37 -10.37 16 6 N -0.35 -9.40 12.74 -51.09 -0.65 -10.05 16 7 C 0.14 2.65 6.42 86.52 0.56 3.21 16 8 C -0.12 -2.12 2.54 -11.39 -0.03 -2.15 16 9 H 0.12 2.08 8.12 -2.38 -0.02 2.06 16 10 C 0.53 12.54 6.56 87.65 0.57 13.11 16 11 O -0.55 -15.51 12.05 -3.03 -0.04 -15.55 16 12 N -0.71 -17.86 4.00 -422.81 -1.69 -19.55 16 13 C 0.19 5.41 0.66 3.64 0.00 5.41 16 14 C -0.15 -3.71 8.40 71.98 0.60 -3.11 16 15 C -0.13 -4.36 4.67 30.68 0.14 -4.22 16 16 C 0.15 6.14 6.26 86.37 0.54 6.68 16 17 N -0.61 -28.68 2.99 -699.08 -2.09 -30.77 16 18 C -0.26 -13.89 9.58 84.03 0.81 -13.08 16 19 H 0.06 3.17 7.89 -2.91 -0.02 3.15 16 20 C -0.05 -2.46 4.91 84.86 0.42 -2.04 16 21 N -0.93 -52.41 11.19 21.65 0.24 -52.17 16 22 Si 0.96 43.90 29.59 68.60 2.03 45.93 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.18 7.67 5.04 86.36 0.43 8.11 16 27 C -0.13 -4.29 4.96 30.67 0.15 -4.14 16 28 C -0.10 -1.52 4.68 30.79 0.14 -1.38 16 29 C -0.04 -0.52 6.33 30.06 0.19 -0.33 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.90 7.88 -2.39 -0.02 1.88 16 34 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 35 H 0.40 9.79 6.92 -92.71 -0.64 9.14 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.77 6.16 -2.38 -0.01 1.76 16 39 H 0.08 2.55 6.21 -2.39 -0.01 2.54 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 42 H 0.01 0.48 7.74 -2.39 -0.02 0.47 16 43 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 44 H 0.05 2.71 6.04 -2.39 -0.01 2.70 16 45 H 0.01 0.36 6.94 -2.39 -0.02 0.34 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 49 H 0.10 1.62 7.80 -2.39 -0.02 1.60 16 50 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -69.33 392.07 2.21 -67.13 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.30 Total: 22.45 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 7.48 Total: 19.42 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -7.57 Total: -139.39 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.04 Total: -15.55 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.33 2.21 -67.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045512894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.156 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds