Wall clock time and date at job start Wed Apr 1 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33475 * 125.49325 * 2 1 4 4 C 1.30327 * 109.72444 * 180.02562 * 3 2 1 5 5 N 1.34675 * 108.04151 * 359.92775 * 4 3 2 6 6 N 1.30974 * 125.50003 * 180.02562 * 2 1 3 7 7 C 1.46304 * 125.04458 * 180.14152 * 5 4 3 8 8 C 1.53302 * 108.76959 * 17.01777 * 7 5 4 9 9 H 1.08996 * 109.47119 * 69.86217 * 8 7 5 10 10 C 1.50707 * 109.46509 * 189.85562 * 8 7 5 11 11 O 1.21283 * 120.00198 * 120.00480 * 10 8 7 12 12 N 1.34778 * 119.99939 * 300.00037 * 10 8 7 13 13 C 1.46502 * 119.99942 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46125 * 59.99483 * 13 12 10 15 15 C 1.53042 * 109.45658 * 300.02148 * 13 12 10 16 16 C 1.53164 * 109.33105 * 301.36214 * 15 13 12 17 17 N 1.46930 * 108.76379 * 305.35505 * 16 15 13 18 18 C 1.36936 * 120.63003 * 233.62920 * 17 16 15 19 19 H 1.07993 * 120.00120 * 151.80894 * 18 17 16 20 20 C 1.38817 * 119.99991 * 331.81406 * 18 17 16 21 21 N 1.31622 * 119.99734 * 343.07769 * 20 18 17 22 22 Si 1.86793 * 120.00015 * 163.08466 * 20 18 17 23 23 H 1.48493 * 109.47430 * 90.00140 * 22 20 18 24 24 H 1.48504 * 109.46951 * 209.99797 * 22 20 18 25 25 H 1.48501 * 109.47236 * 329.99451 * 22 20 18 26 26 C 1.46929 * 118.74019 * 53.61200 * 17 16 15 27 27 C 1.53038 * 109.46052 * 179.97438 * 13 12 10 28 28 C 1.53159 * 109.53802 * 309.87854 * 8 7 5 29 29 C 1.50936 * 127.90318 * 179.91801 * 4 3 2 30 30 H 1.09001 * 109.47518 * 89.97678 * 1 2 3 31 31 H 1.09003 * 109.46690 * 209.97281 * 1 2 3 32 32 H 1.08997 * 109.47219 * 329.96722 * 1 2 3 33 33 H 1.09002 * 109.58759 * 136.80430 * 7 5 4 34 34 H 1.09003 * 109.58692 * 257.23068 * 7 5 4 35 35 H 0.97000 * 120.00179 * 359.97438 * 12 10 8 36 36 H 1.09003 * 109.47042 * 60.00384 * 14 13 12 37 37 H 1.08999 * 109.46581 * 180.02562 * 14 13 12 38 38 H 1.08995 * 109.47163 * 299.99898 * 14 13 12 39 39 H 1.09008 * 109.49408 * 61.30316 * 15 13 12 40 40 H 1.09000 * 109.49851 * 181.39287 * 15 13 12 41 41 H 1.08998 * 109.59146 * 185.56886 * 16 15 13 42 42 H 1.08993 * 109.70762 * 65.20836 * 16 15 13 43 43 H 0.96998 * 120.00063 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.58227 * 186.60137 * 26 17 16 45 45 H 1.08997 * 109.70536 * 66.24089 * 26 17 16 46 46 H 1.09001 * 109.49812 * 178.60319 * 27 13 12 47 47 H 1.08995 * 109.50164 * 298.67049 * 27 13 12 48 48 H 1.09003 * 109.46384 * 309.20427 * 28 8 7 49 49 H 1.08993 * 109.55540 * 189.06500 * 28 8 7 50 50 H 1.08996 * 109.71533 * 315.59290 * 29 4 3 51 51 H 1.08996 * 109.71265 * 76.20234 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7326 -0.0005 5 7 3.5896 -0.6131 0.0007 6 7 2.2676 -1.0663 -0.0005 7 6 4.8198 -1.4051 0.0035 8 6 5.9850 -0.5047 0.4296 9 1 5.8840 -0.2550 1.4858 10 6 7.2873 -1.2298 0.2073 11 8 8.1199 -0.7653 -0.5424 12 7 7.5269 -2.3946 0.8417 13 6 8.7931 -3.0993 0.6260 14 6 9.9557 -2.2003 1.0517 15 6 8.9356 -3.4491 -0.8571 16 6 7.7520 -4.3203 -1.2885 17 7 7.6745 -5.4867 -0.3983 18 6 7.6494 -6.7559 -0.9119 19 1 8.0391 -7.5803 -0.3335 20 6 7.1230 -6.9827 -2.1763 21 7 6.3579 -6.0740 -2.7433 22 14 7.5003 -8.5774 -3.0727 23 1 6.4700 -9.5916 -2.7337 24 1 7.4931 -8.3353 -4.5379 25 1 8.8378 -9.0731 -2.6596 26 6 7.6250 -5.2655 1.0534 27 6 8.8101 -4.3834 1.4583 28 6 5.9689 0.7816 -0.4016 29 6 4.7522 1.6267 -0.0025 30 1 -0.3634 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 4.7205 -2.2318 0.7070 34 1 5.0059 -1.7946 -0.9974 35 1 6.8613 -2.7660 1.4416 36 1 9.8541 -1.9507 2.1079 37 1 10.8978 -2.7243 0.8908 38 1 9.9434 -1.2855 0.4592 39 1 8.9468 -2.5329 -1.4475 40 1 9.8657 -3.9951 -1.0143 41 1 7.8989 -4.6537 -2.3158 42 1 6.8283 -3.7459 -1.2193 43 1 5.9904 -6.2323 -3.6269 44 1 7.6881 -6.2226 1.5711 45 1 6.6920 -4.7679 1.3176 46 1 9.7415 -4.9207 1.2793 47 1 8.7325 -4.1325 2.5161 48 1 5.9054 0.5293 -1.4601 49 1 6.8818 1.3475 -0.2158 50 1 4.6136 2.4343 -0.7213 51 1 4.9041 2.0428 0.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045512895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:28 Heat of formation + Delta-G solvation = 45.086665 kcal Electronic energy + Delta-G solvation = -32390.642120 eV Core-core repulsion = 28326.043196 eV Total energy + Delta-G solvation = -4064.598924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.43926 -41.61541 -39.31212 -37.58222 -36.12278 -34.32552 -33.76099 -33.13741 -32.25292 -31.61034 -30.55581 -29.31498 -29.04169 -25.95176 -25.46010 -24.59597 -23.92183 -22.76617 -22.00345 -21.58347 -20.39945 -20.17277 -18.82313 -18.35878 -17.76888 -17.20637 -16.85545 -16.45499 -16.25102 -15.74660 -15.55727 -15.34925 -15.27554 -15.18070 -15.07896 -14.84879 -14.52178 -14.22262 -14.10242 -13.83158 -13.52913 -13.37978 -13.26625 -13.21475 -12.96251 -12.89372 -12.78378 -12.64705 -12.56178 -12.53317 -12.26882 -12.22705 -11.97513 -11.96797 -11.76324 -11.34544 -11.30426 -11.13487 -10.79799 -10.54395 -10.50316 -10.36030 -9.96352 -8.66484 -7.89032 -5.33520 0.54411 1.08670 1.42689 1.45095 1.53762 1.66748 1.79092 2.17973 2.49126 2.91894 3.15238 3.26802 3.42755 3.45670 3.69885 3.71551 3.79833 3.87036 4.05386 4.08529 4.14756 4.18150 4.22459 4.40014 4.49640 4.52897 4.67672 4.71048 4.72629 4.76292 4.83145 4.86422 4.90441 4.92790 4.95566 4.97297 5.06554 5.11984 5.15573 5.22092 5.28994 5.35463 5.40649 5.45368 5.51125 5.61895 5.67197 5.75880 5.78148 6.37143 6.61319 7.04521 7.14022 7.26722 7.87086 8.36950 9.16255 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010332 B = 0.003532 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.487329 B = 7924.859441 C = 9764.682139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.560 5.560 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.355 5.355 7 C 0.143 3.857 8 C -0.109 4.109 9 H 0.141 0.859 10 C 0.528 3.472 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.188 3.812 14 C -0.150 4.150 15 C -0.139 4.139 16 C 0.193 3.807 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.960 3.040 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.269 1.269 26 C 0.140 3.860 27 C -0.124 4.124 28 C -0.102 4.102 29 C -0.031 4.031 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.406 0.594 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.037 0.963 42 H -0.005 1.005 43 H 0.246 0.754 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.115 0.885 50 H 0.123 0.877 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 16.290 12.083 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.289 5.289 4 C 0.000 4.000 5 N -0.171 5.171 6 N -0.184 5.184 7 C 0.021 3.979 8 C -0.131 4.131 9 H 0.159 0.841 10 C 0.313 3.687 11 O -0.431 6.431 12 N -0.356 5.356 13 C 0.102 3.898 14 C -0.208 4.208 15 C -0.179 4.179 16 C 0.067 3.933 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.789 3.211 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.194 1.194 26 C 0.014 3.986 27 C -0.164 4.164 28 C -0.140 4.140 29 C -0.071 4.071 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.013 0.987 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.134 0.866 50 H 0.141 0.859 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.185 16.080 11.416 19.756 hybrid contribution -0.271 -1.649 -1.028 1.962 sum -1.456 14.431 10.388 17.841 Atomic orbital electron populations 1.20237 0.81429 1.05049 1.04650 1.25215 0.99854 0.85177 0.97370 1.70209 1.00469 1.31052 1.27199 1.25180 0.95973 0.83994 0.94839 1.50161 1.05343 1.06438 1.55204 1.77964 0.87586 1.24030 1.28779 1.21683 0.78749 0.93960 1.03552 1.21699 0.89970 0.96169 1.05253 0.84140 1.20208 0.88014 0.80974 0.79493 1.90654 1.48073 1.67274 1.37132 1.46114 1.20021 1.22228 1.47254 1.20188 0.83748 0.91663 0.94180 1.22107 0.96824 0.99986 1.01854 1.22374 0.99304 0.99159 0.97027 1.20327 0.92756 0.86223 0.93989 1.44272 1.85613 1.02001 1.01194 1.19502 1.32306 0.86639 1.00574 0.91443 1.25739 0.97568 1.00490 1.00724 1.70187 1.34799 1.36963 1.16043 0.85384 0.78337 0.80039 0.77362 1.21139 1.22397 1.19381 1.21069 0.95375 0.97903 0.84211 1.22211 1.00156 0.94365 0.99631 1.21545 0.99528 0.93687 0.99241 1.20648 0.84181 0.95246 1.06992 0.88955 0.89293 0.88003 0.87956 0.91352 0.75790 0.90886 0.91637 0.92042 0.92000 0.92878 0.94431 0.98653 0.94513 0.92575 0.96043 0.90978 0.88455 0.92242 0.86620 0.85879 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.02 10.51 71.24 0.75 -0.27 16 2 C 0.21 5.80 8.15 138.48 1.13 6.93 16 3 N -0.56 -15.54 11.18 -179.30 -2.01 -17.54 16 4 C 0.28 6.82 7.72 138.37 1.07 7.89 16 5 N -0.38 -10.89 4.04 -338.32 -1.37 -12.25 16 6 N -0.35 -11.61 12.74 -51.07 -0.65 -12.26 16 7 C 0.14 3.72 6.43 86.52 0.56 4.28 16 8 C -0.11 -2.11 2.54 -11.38 -0.03 -2.13 16 9 H 0.14 1.84 8.12 -2.39 -0.02 1.82 16 10 C 0.53 13.44 6.56 87.66 0.57 14.01 16 11 O -0.55 -17.37 12.05 -3.04 -0.04 -17.40 16 12 N -0.70 -17.79 4.01 -422.78 -1.69 -19.48 16 13 C 0.19 5.38 0.66 3.63 0.00 5.38 16 14 C -0.15 -3.62 8.40 71.98 0.60 -3.01 16 15 C -0.14 -5.30 4.66 30.66 0.14 -5.16 16 16 C 0.19 9.20 5.04 86.35 0.44 9.63 16 17 N -0.61 -28.98 2.99 -699.17 -2.09 -31.07 16 18 C -0.26 -14.01 9.58 84.03 0.81 -13.21 16 19 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 21 N -0.93 -55.94 11.20 21.65 0.24 -55.69 16 22 Si 0.96 45.24 29.59 68.60 2.03 47.27 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.14 5.06 6.24 86.36 0.54 5.60 16 27 C -0.12 -3.42 4.96 30.67 0.15 -3.27 16 28 C -0.10 -1.77 4.68 30.79 0.14 -1.62 16 29 C -0.03 -0.46 6.33 30.07 0.19 -0.27 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 2.59 7.88 -2.39 -0.02 2.57 16 34 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.41 8.87 6.92 -92.71 -0.64 8.23 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.69 6.17 -2.39 -0.01 1.67 16 39 H 0.06 2.48 6.20 -2.38 -0.01 2.46 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 2.12 6.06 -2.39 -0.01 2.11 16 42 H 0.00 -0.23 7.74 -2.39 -0.02 -0.25 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 45 H 0.02 0.75 6.94 -2.39 -0.02 0.73 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 49 H 0.12 1.71 7.81 -2.39 -0.02 1.69 16 50 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.79 392.12 2.20 -73.59 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.30 Total: 22.46 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 7.48 Total: 22.39 kcal Atomic # 7 Polarization: -140.74 SS G_CDS: -7.57 Total: -148.30 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.04 Total: -17.40 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.79 2.20 -73.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045512895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.673 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds