Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29108 * 126.00931 * 2 1 4 4 N 1.29010 * 110.26212 * 180.09652 * 3 2 1 5 5 C 1.32907 * 108.63629 * 0.02591 * 4 3 2 6 6 C 1.34398 * 126.00824 * 180.02562 * 2 1 3 7 7 C 1.50534 * 129.25697 * 359.81636 * 6 2 1 8 8 C 1.53430 * 108.32765 * 196.49127 * 7 6 2 9 9 H 1.08997 * 109.45706 * 70.28806 * 8 7 6 10 10 C 1.50699 * 109.45334 * 190.25493 * 8 7 6 11 11 O 1.21279 * 120.00836 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99881 * 180.02562 * 10 8 7 13 13 C 1.46501 * 120.00367 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.44702 * 299.96139 * 13 12 10 15 15 C 1.53039 * 109.45987 * 179.97438 * 13 12 10 16 16 C 1.53189 * 109.31250 * 301.34040 * 15 13 12 17 17 N 1.46922 * 108.77859 * 305.36901 * 16 15 13 18 18 C 1.36934 * 120.62930 * 233.58928 * 17 16 15 19 19 H 1.08002 * 120.00108 * 151.91786 * 18 17 16 20 20 C 1.38815 * 120.00247 * 331.63678 * 18 17 16 21 21 N 1.31620 * 119.99517 * 343.23363 * 20 18 17 22 22 Si 1.86793 * 120.00533 * 163.23063 * 20 18 17 23 23 H 1.48505 * 109.47033 * 59.99848 * 22 20 18 24 24 H 1.48497 * 109.47426 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47018 * 300.00437 * 22 20 18 26 26 C 1.46918 * 118.74053 * 53.85807 * 17 16 15 27 27 C 1.53041 * 109.45932 * 59.92616 * 13 12 10 28 28 C 1.53107 * 109.55796 * 310.27714 * 8 7 6 29 29 C 1.50601 * 129.16607 * 179.87449 * 5 4 3 30 30 H 1.08997 * 109.46630 * 269.95164 * 1 2 3 31 31 H 1.08992 * 109.46984 * 29.95426 * 1 2 3 32 32 H 1.08996 * 109.47015 * 149.95780 * 1 2 3 33 33 H 1.08995 * 109.69089 * 76.77623 * 7 6 2 34 34 H 1.09002 * 109.69111 * 316.20507 * 7 6 2 35 35 H 0.97003 * 120.00208 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.47362 * 300.03402 * 14 13 12 37 37 H 1.09003 * 109.47027 * 60.03500 * 14 13 12 38 38 H 1.08997 * 109.47447 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.49437 * 181.39253 * 15 13 12 40 40 H 1.08999 * 109.52291 * 61.31172 * 15 13 12 41 41 H 1.09004 * 109.58689 * 185.57737 * 16 15 13 42 42 H 1.09000 * 109.58628 * 65.15824 * 16 15 13 43 43 H 0.97002 * 119.99925 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.58710 * 65.92889 * 26 17 16 45 45 H 1.09005 * 109.58912 * 186.35372 * 26 17 16 46 46 H 1.09001 * 109.49725 * 178.60746 * 27 13 12 47 47 H 1.09000 * 109.49800 * 298.67429 * 27 13 12 48 48 H 1.08994 * 109.45521 * 190.08551 * 28 8 7 49 49 H 1.08998 * 109.45409 * 310.02041 * 28 8 7 50 50 H 1.09003 * 109.68697 * 316.28539 * 29 5 4 51 51 H 1.08999 * 109.69350 * 76.82242 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6943 -0.0020 5 6 3.5328 -0.6331 -0.0040 6 6 2.2552 -1.0872 -0.0005 7 6 1.8723 -2.5430 0.0026 8 6 3.1013 -3.3642 0.4140 9 1 3.3138 -3.1957 1.4697 10 6 2.8265 -4.8281 0.1847 11 8 1.7559 -5.1815 -0.2623 12 7 3.7702 -5.7448 0.4774 13 6 3.5033 -7.1679 0.2539 14 6 2.2981 -7.5980 1.0926 15 6 4.7291 -7.9871 0.6644 16 6 5.9411 -7.5298 -0.1533 17 7 5.6079 -7.6167 -1.5816 18 6 6.4103 -8.3150 -2.4440 19 1 5.9884 -8.7625 -3.3317 20 6 7.7672 -8.4428 -2.1801 21 7 8.3466 -7.6426 -1.3104 22 14 8.7706 -9.7502 -3.0593 23 1 8.7105 -9.5181 -4.5248 24 1 10.1824 -9.6801 -2.6040 25 1 8.2166 -11.0923 -2.7475 26 6 4.4007 -6.9352 -2.0682 27 6 3.2035 -7.4039 -1.2281 28 6 4.3087 -2.9347 -0.4238 29 6 4.7468 -1.5242 -0.0093 30 1 -0.3632 -0.0009 1.0277 31 1 -0.3633 0.8903 -0.5131 32 1 -0.3633 -0.8896 -0.5145 33 1 1.5493 -2.8399 -0.9951 34 1 1.0643 -2.7088 0.7152 35 1 4.6264 -5.4623 0.8352 36 1 2.5110 -7.4289 2.1482 37 1 1.4250 -7.0146 0.8000 38 1 2.0994 -8.6568 0.9271 39 1 4.5404 -9.0438 0.4753 40 1 4.9286 -7.8373 1.7255 41 1 6.7925 -8.1750 0.0632 42 1 6.1867 -6.4991 0.1025 43 1 9.2946 -7.7321 -1.1257 44 1 4.5232 -5.8570 -1.9654 45 1 4.2354 -7.1880 -3.1156 46 1 3.0291 -8.4661 -1.3994 47 1 2.3164 -6.8388 -1.5143 48 1 5.1300 -3.6325 -0.2613 49 1 4.0365 -2.9343 -1.4792 50 1 5.4794 -1.1425 -0.7206 51 1 5.1848 -1.5543 0.9883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045536424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = 54.710858 kcal Electronic energy + Delta-G solvation = -32307.551479 eV Core-core repulsion = 28243.369891 eV Total energy + Delta-G solvation = -4064.181588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.42797 -41.53545 -39.22739 -37.51341 -36.06636 -35.82136 -33.66048 -32.57106 -31.61355 -31.46231 -30.94275 -29.00255 -28.70367 -25.98421 -25.63688 -24.32322 -23.88184 -22.70222 -22.38472 -21.74638 -20.48325 -20.06417 -18.75629 -18.41452 -17.89837 -17.44159 -16.80442 -16.38195 -16.17532 -15.70336 -15.56342 -15.22366 -14.96497 -14.92724 -14.87835 -14.67488 -14.62518 -14.29013 -14.09105 -13.94876 -13.66435 -13.26899 -13.19290 -13.00827 -12.98215 -12.94403 -12.78916 -12.57044 -12.56064 -12.45863 -12.19255 -12.14650 -11.94454 -11.91726 -11.71003 -11.54211 -11.24689 -11.22611 -10.93483 -10.48883 -10.33969 -9.87723 -9.81810 -8.58881 -7.83480 -5.26930 0.54126 1.45037 1.46895 1.48983 1.50629 1.56896 1.77162 2.32131 2.54342 3.17342 3.31153 3.45501 3.73396 3.75899 3.78546 3.78994 3.90121 3.99954 4.09803 4.18300 4.21716 4.27852 4.34551 4.45584 4.50288 4.55695 4.58672 4.68044 4.71127 4.80791 4.87961 4.90384 4.93216 4.97018 4.98763 5.02663 5.05247 5.10446 5.19757 5.23949 5.28950 5.31353 5.37686 5.43707 5.55533 5.63466 5.68886 5.77854 5.85101 6.44227 6.76485 7.21423 7.40911 7.45058 7.92438 8.43225 9.21425 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002894 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.014704 B = 9671.631949 C =10780.065927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.277 5.277 3 N -0.128 5.128 4 N -0.300 5.300 5 C -0.034 4.034 6 C -0.011 4.011 7 C -0.014 4.014 8 C -0.093 4.093 9 H 0.124 0.876 10 C 0.526 3.474 11 O -0.565 6.565 12 N -0.706 5.706 13 C 0.189 3.811 14 C -0.150 4.150 15 C -0.133 4.133 16 C 0.180 3.820 17 N -0.605 5.605 18 C -0.264 4.264 19 H 0.057 0.943 20 C -0.042 4.042 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.153 3.847 27 C -0.130 4.130 28 C -0.105 4.105 29 C -0.026 4.026 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.250 0.750 44 H 0.016 0.984 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 9.350 8.412 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.069 5.069 3 N -0.105 5.105 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.146 4.146 7 C -0.053 4.053 8 C -0.114 4.114 9 H 0.142 0.858 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.103 3.897 14 C -0.208 4.208 15 C -0.172 4.172 16 C 0.054 3.946 17 N -0.329 5.329 18 C -0.395 4.395 19 H 0.074 0.926 20 C -0.238 4.238 21 N -0.571 5.571 22 Si 0.787 3.213 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.027 3.973 27 C -0.170 4.170 28 C -0.143 4.143 29 C -0.065 4.065 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.686 10.703 8.130 21.426 hybrid contribution 1.196 -1.434 -0.646 1.976 sum -15.490 9.269 7.484 19.542 Atomic orbital electron populations 1.22756 0.69978 1.07627 1.06956 1.47208 1.10699 1.03796 1.45234 1.78474 0.96313 1.12495 1.23249 1.74735 1.10450 1.13381 1.17799 1.22117 0.96459 0.90967 1.07932 1.22017 0.90858 0.92919 1.08824 1.19871 0.97806 0.83220 1.04409 1.21278 0.96258 0.90200 1.03693 0.85828 1.20541 0.83572 0.88039 0.76580 1.90607 1.25774 1.82089 1.45994 1.46112 1.18124 1.06252 1.65183 1.20127 0.95117 0.80112 0.94374 1.22109 0.97716 1.01591 0.99382 1.22334 0.95279 0.99544 1.00068 1.20583 0.94370 0.97523 0.82128 1.44239 1.25411 1.59132 1.04095 1.19378 0.89174 1.25525 1.05388 0.92574 1.25630 0.97186 1.00419 1.00549 1.70119 1.10209 1.38018 1.38778 0.85486 0.77519 0.79914 0.78351 1.20737 1.21900 1.20688 1.20940 0.86673 0.94042 0.95648 1.22299 0.98462 1.00837 0.95400 1.21559 0.96951 0.96162 0.99641 1.19966 0.91883 0.90648 1.04036 0.86879 0.86882 0.86181 0.89071 0.87726 0.75781 0.91711 0.91566 0.91820 0.91853 0.90066 0.92921 0.96891 0.94096 0.96647 0.94572 0.92569 0.90767 0.89681 0.91969 0.89642 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.27 127.77 1.44 1.99 16 2 N -0.28 -5.47 3.73 -356.42 -1.33 -6.80 16 3 N -0.13 -3.45 13.19 37.02 0.49 -2.96 16 4 N -0.30 -8.93 12.40 -48.99 -0.61 -9.54 16 5 C -0.03 -0.83 7.11 41.75 0.30 -0.53 16 6 C -0.01 -0.22 6.76 41.50 0.28 0.06 16 7 C -0.01 -0.23 4.68 29.94 0.14 -0.09 16 8 C -0.09 -1.68 2.50 -11.36 -0.03 -1.71 16 9 H 0.12 1.76 8.12 -2.39 -0.02 1.74 16 10 C 0.53 12.53 6.57 87.66 0.58 13.10 16 11 O -0.56 -16.12 12.04 -3.03 -0.04 -16.16 16 12 N -0.71 -17.79 3.91 -422.80 -1.65 -19.44 16 13 C 0.19 5.44 0.66 3.63 0.00 5.44 16 14 C -0.15 -3.71 8.40 71.98 0.60 -3.11 16 15 C -0.13 -4.27 4.96 30.67 0.15 -4.12 16 16 C 0.18 7.62 5.02 86.36 0.43 8.05 16 17 N -0.61 -28.54 2.99 -698.36 -2.08 -30.63 16 18 C -0.26 -14.13 9.58 84.03 0.81 -13.33 16 19 H 0.06 3.01 7.89 -2.91 -0.02 2.99 16 20 C -0.04 -2.24 4.92 84.86 0.42 -1.82 16 21 N -0.93 -51.63 11.20 21.65 0.24 -51.39 16 22 Si 0.96 43.82 29.59 68.60 2.03 45.85 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.15 6.21 6.28 86.50 0.54 6.75 16 27 C -0.13 -4.41 4.68 30.80 0.14 -4.27 16 28 C -0.10 -2.12 5.17 30.76 0.16 -1.96 16 29 C -0.03 -0.54 6.30 29.95 0.19 -0.35 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.55 7.96 -2.39 -0.02 0.53 16 33 H 0.09 1.73 7.78 -2.39 -0.02 1.71 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 9.59 6.59 -92.71 -0.61 8.98 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.77 6.17 -2.39 -0.01 1.75 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.62 6.07 -2.38 -0.01 2.61 16 42 H 0.01 0.56 6.94 -2.39 -0.02 0.54 16 43 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.02 0.63 7.74 -2.38 -0.02 0.62 16 45 H 0.04 1.53 7.93 -2.38 -0.02 1.51 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.51 6.20 -2.39 -0.01 2.50 16 48 H 0.08 1.81 7.30 -2.39 -0.02 1.80 16 49 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 50 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.27 389.77 3.54 -66.73 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.33 Total: 20.24 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.16 Total: 4.11 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -4.94 Total: -120.76 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.04 Total: -16.16 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.27 3.54 -66.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045536424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.443 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds