Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36601 * 126.58284 * 2 1 4 4 C 1.47524 * 125.76822 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99918 * 5.78646 * 4 3 2 6 6 N 1.34770 * 119.99723 * 185.78063 * 4 3 2 7 7 C 1.44793 * 120.17921 * 185.64560 * 6 4 3 8 8 C 1.51513 * 112.22869 * 264.55391 * 7 6 4 9 9 C 1.51312 * 113.25069 * 285.36794 * 8 7 6 10 10 H 1.09005 * 111.31459 * 186.09837 * 9 8 7 11 11 C 1.54717 * 106.48327 * 307.66241 * 9 8 7 12 12 C 1.54237 * 104.37336 * 89.12067 * 11 9 8 13 13 C 1.50870 * 105.27610 * 11.56040 * 12 11 9 14 14 H 1.08997 * 106.52525 * 122.52932 * 13 12 11 15 15 C 1.49815 * 120.18225 * 5.37274 * 6 4 3 16 16 N 1.48060 * 109.90365 * 7.87375 * 13 12 11 17 17 C 1.36942 * 127.83768 * 155.21265 * 16 13 12 18 18 H 1.08003 * 120.00141 * 179.97438 * 17 16 13 19 19 C 1.38817 * 119.99973 * 359.93382 * 17 16 13 20 20 N 1.31617 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99791 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47373 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47058 * 120.00421 * 21 19 17 24 24 H 1.48502 * 109.46794 * 240.00302 * 21 19 17 25 25 N 1.34403 * 108.45818 * 179.97438 * 3 2 1 26 26 N 1.28763 * 109.52329 * 359.70707 * 25 3 2 27 27 N 1.34815 * 126.58012 * 179.97438 * 2 1 3 28 28 C 1.46502 * 126.59312 * 0.02562 * 27 2 1 29 29 C 1.52994 * 109.47340 * 240.00434 * 28 27 2 30 30 C 1.53003 * 109.46739 * 120.00683 * 28 27 2 31 31 H 1.08998 * 109.47324 * 270.02926 * 1 2 3 32 32 H 1.09009 * 109.46973 * 30.02479 * 1 2 3 33 33 H 1.09001 * 109.47143 * 150.02158 * 1 2 3 34 34 H 1.09000 * 108.93115 * 25.26083 * 7 6 4 35 35 H 1.09001 * 108.93099 * 143.93449 * 7 6 4 36 36 H 1.09009 * 108.72426 * 46.33711 * 8 7 6 37 37 H 1.08997 * 108.73091 * 164.51478 * 8 7 6 38 38 H 1.08998 * 110.45032 * 207.84510 * 11 9 8 39 39 H 1.08997 * 110.45225 * 330.39874 * 11 9 8 40 40 H 1.08996 * 110.27910 * 130.50872 * 12 11 9 41 41 H 1.09001 * 110.28126 * 252.60675 * 12 11 9 42 42 H 1.09001 * 109.54949 * 270.55289 * 15 6 4 43 43 H 1.09001 * 109.54827 * 30.83264 * 15 6 4 44 44 H 0.96998 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.47078 * 0.02562 * 28 27 2 46 46 H 1.09002 * 109.47253 * 60.00385 * 29 28 27 47 47 H 1.09000 * 109.47109 * 180.02562 * 29 28 27 48 48 H 1.08998 * 109.47269 * 300.00140 * 29 28 27 49 49 H 1.08998 * 109.47329 * 60.00191 * 30 28 27 50 50 H 1.09000 * 109.47011 * 180.02562 * 30 28 27 51 51 H 1.09005 * 109.47065 * 300.00332 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6911 2.7644 0.1051 6 7 2.7762 3.4968 -0.1180 7 6 2.3578 4.8777 0.0032 8 6 2.0836 5.5139 -1.3443 9 6 3.3424 5.8425 -2.1169 10 1 3.1147 6.3935 -3.0295 11 6 4.2374 6.6719 -1.1658 12 6 5.0774 5.6186 -0.4148 13 6 4.8464 4.3245 -1.1552 14 1 5.8271 3.9684 -1.4706 15 6 4.2186 3.1790 -0.3687 16 7 4.0818 4.5834 -2.3964 17 6 4.0598 3.8328 -3.5415 18 1 3.4509 4.1419 -4.3783 19 6 4.8208 2.6749 -3.6272 20 7 5.5631 2.2984 -2.6076 21 14 4.7913 1.6514 -5.1895 22 1 3.8841 2.2853 -6.1796 23 1 6.1624 1.5706 -5.7543 24 1 4.3036 0.2842 -4.8763 25 7 3.5984 0.6788 0.0006 26 7 3.6299 -0.6084 0.0071 27 7 2.3104 -1.0826 0.0005 28 6 1.8863 -2.4849 0.0006 29 6 2.4284 -3.1816 1.2501 30 6 2.4297 -3.1820 -1.2483 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.4505 4.9207 0.6057 35 1 3.1429 5.4422 0.5062 36 1 1.4774 4.8293 -1.9377 37 1 1.5203 6.4340 -1.1888 38 1 4.8840 7.3387 -1.7362 39 1 3.6251 7.2403 -0.4658 40 1 6.1334 5.8870 -0.4436 41 1 4.7373 5.5296 0.6169 42 1 4.7363 3.0586 0.5829 43 1 4.2941 2.2573 -0.9456 44 1 6.0946 1.4892 -2.6673 45 1 0.7975 -2.5352 -0.0003 46 1 2.0414 -2.6850 2.1399 47 1 2.1133 -4.2250 1.2499 48 1 3.5173 -3.1313 1.2506 49 1 3.5185 -3.1318 -1.2478 50 1 2.1138 -4.2253 -1.2485 51 1 2.0435 -2.6856 -2.1386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045869850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = 111.067121 kcal Electronic energy + Delta-G solvation = -33689.254272 eV Core-core repulsion = 29627.516474 eV Total energy + Delta-G solvation = -4061.737797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84087 -39.64305 -37.79181 -36.27355 -33.96830 -33.07912 -32.63679 -31.47925 -30.54887 -29.36640 -27.92312 -27.54047 -26.71303 -25.71643 -23.86158 -23.51099 -22.99682 -21.22112 -20.05178 -19.61932 -19.10577 -18.24504 -17.22513 -16.63928 -15.83137 -15.63913 -15.29488 -14.99372 -14.71253 -14.42270 -14.23509 -13.90951 -13.77279 -13.32982 -13.18441 -13.04423 -12.87006 -12.68581 -12.46526 -12.37155 -12.31367 -12.05358 -11.77644 -11.69089 -11.59166 -11.39333 -11.22241 -11.13291 -11.06269 -10.82438 -10.74637 -10.70226 -10.46903 -10.10467 -9.90652 -9.69156 -9.53730 -9.37839 -9.35130 -9.02488 -8.65215 -8.54702 -7.58879 -6.77261 -5.60980 -2.99045 1.54367 2.31765 2.38513 3.40880 3.47014 3.49018 3.80122 4.06372 4.28189 4.51448 4.53680 4.61873 4.71999 4.93018 5.08369 5.25034 5.27823 5.36465 5.41843 5.45886 5.49362 5.52606 5.57831 5.62584 5.71858 5.76721 5.80323 5.85742 5.92601 6.02246 6.04572 6.08433 6.14050 6.28763 6.30776 6.40210 6.42438 6.61648 6.68010 6.79384 6.80369 6.83561 6.95107 7.08539 7.21351 7.47154 7.61386 7.80067 8.03192 8.29618 8.35901 8.55021 8.97395 9.25974 9.84543 10.58733 11.44215 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.005011 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.160140 B = 5586.405934 C = 6992.713971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.106 3.894 3 C -0.089 4.089 4 C 0.598 3.402 5 O -0.570 6.570 6 N -0.574 5.574 7 C 0.118 3.882 8 C -0.145 4.145 9 C 0.150 3.850 10 H 0.060 0.940 11 C -0.131 4.131 12 C -0.125 4.125 13 C 0.140 3.860 14 H 0.102 0.898 15 C 0.112 3.888 16 N -0.579 5.579 17 C -0.207 4.207 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.910 5.910 21 Si 0.906 3.094 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.295 1.295 25 N -0.172 5.172 26 N -0.074 5.074 27 N -0.365 5.365 28 C 0.147 3.853 29 C -0.160 4.160 30 C -0.163 4.163 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.152 0.848 44 H 0.253 0.747 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 -5.986 8.167 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.228 4.228 4 C 0.384 3.616 5 O -0.451 6.451 6 N -0.303 5.303 7 C -0.006 4.006 8 C -0.186 4.186 9 C 0.042 3.958 10 H 0.078 0.922 11 C -0.169 4.169 12 C -0.163 4.163 13 C 0.033 3.967 14 H 0.120 0.880 15 C -0.009 4.009 16 N -0.302 5.302 17 C -0.335 4.335 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.558 5.558 21 Si 0.737 3.263 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.222 1.222 25 N -0.045 5.045 26 N -0.053 5.053 27 N -0.152 5.152 28 C 0.045 3.955 29 C -0.218 4.218 30 C -0.221 4.221 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.169 0.831 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.363 -6.484 8.059 12.144 hybrid contribution -0.980 -0.544 -0.898 1.436 sum -7.343 -7.028 7.161 12.434 Atomic orbital electron populations 1.20586 0.85453 1.04702 1.03910 1.21768 0.95835 0.86686 0.98817 1.21245 0.88990 0.95436 1.17103 1.16774 0.85091 0.82876 0.76853 1.90649 1.16345 1.83746 1.54371 1.48337 1.10492 1.04559 1.66909 1.20841 1.00077 0.82429 0.97236 1.21951 0.99901 0.99370 0.97389 1.21153 0.90879 0.88908 0.94826 0.92173 1.22673 0.98406 0.97512 0.98354 1.21974 0.99092 0.96807 0.98422 1.20631 0.99373 0.90411 0.86251 0.88038 1.23944 0.75034 1.03994 0.97977 1.44951 1.50174 1.23306 1.11734 1.18997 1.21882 1.02340 0.90312 0.90540 1.24642 1.00108 0.98052 0.97640 1.69684 1.32124 1.25416 1.28604 0.86120 0.77161 0.80186 0.82813 1.20829 1.21820 1.22214 1.74947 1.18347 1.02954 1.08204 1.81962 0.95826 1.04277 1.23258 1.50569 1.06701 1.06656 1.51262 1.21492 1.00031 0.76062 0.97944 1.22128 1.03306 1.00447 0.95914 1.22155 1.03444 1.00404 0.96120 0.89656 0.87340 0.91426 0.91786 0.90472 0.92268 0.92985 0.92522 0.92210 0.92339 0.92365 0.94892 0.83057 0.93615 0.87822 0.91905 0.90343 0.90677 0.90609 0.90341 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.35 36.00 0.34 -0.80 16 2 C 0.11 1.81 7.02 -81.88 -0.57 1.24 16 3 C -0.09 -1.86 6.66 -83.55 -0.56 -2.42 16 4 C 0.60 13.20 7.66 -12.48 -0.10 13.11 16 5 O -0.57 -12.65 14.33 5.28 0.08 -12.57 16 6 N -0.57 -12.50 2.86 -174.72 -0.50 -13.00 16 7 C 0.12 2.26 5.11 -5.71 -0.03 2.23 16 8 C -0.15 -2.81 5.01 -28.33 -0.14 -2.95 16 9 C 0.15 3.06 4.08 -66.69 -0.27 2.79 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.13 -2.25 6.02 -25.18 -0.15 -2.41 16 12 C -0.12 -2.32 5.78 -27.15 -0.16 -2.47 16 13 C 0.14 3.22 1.97 -68.41 -0.13 3.08 16 14 H 0.10 2.69 6.08 -51.93 -0.32 2.37 16 15 C 0.11 2.59 4.72 -2.46 -0.01 2.58 16 16 N -0.58 -14.21 2.70 -156.78 -0.42 -14.63 16 17 C -0.21 -5.64 10.40 -15.05 -0.16 -5.80 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 20 N -0.91 -25.23 8.14 55.49 0.45 -24.77 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 N -0.17 -3.77 8.95 32.85 0.29 -3.48 16 26 N -0.07 -1.46 13.67 60.35 0.82 -0.63 16 27 N -0.36 -5.74 3.28 -50.41 -0.17 -5.91 16 28 C 0.15 1.56 3.68 -67.93 -0.25 1.31 16 29 C -0.16 -1.42 9.46 37.15 0.35 -1.07 16 30 C -0.16 -1.69 9.47 37.16 0.35 -1.33 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.11 1.64 6.57 -51.92 -0.34 1.30 16 33 H 0.07 0.66 7.18 -51.93 -0.37 0.29 16 34 H 0.06 1.20 7.31 -51.93 -0.38 0.82 16 35 H 0.08 1.36 3.92 -51.93 -0.20 1.16 16 36 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.99 6.14 -51.93 -0.32 0.67 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.15 3.88 3.43 -51.93 -0.18 3.70 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.10 0.83 6.79 -51.93 -0.35 0.48 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -32.09 383.46 -8.16 -40.25 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.89 Total: 4.85 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.59 Total: 6.73 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.48 Total: -62.43 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.09 -8.16 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045869850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.313 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds