Wall clock time and date at job start Wed Apr 1 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36601 * 126.58284 * 2 1 4 4 C 1.47524 * 125.76822 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99918 * 5.78646 * 4 3 2 6 6 N 1.34770 * 119.99723 * 185.78063 * 4 3 2 7 7 C 1.44793 * 120.17921 * 185.64560 * 6 4 3 8 8 C 1.51513 * 112.22869 * 264.55391 * 7 6 4 9 9 C 1.51312 * 113.25069 * 285.36794 * 8 7 6 10 10 H 1.09005 * 111.31459 * 186.09837 * 9 8 7 11 11 C 1.54717 * 106.48327 * 307.66241 * 9 8 7 12 12 C 1.54237 * 104.37336 * 89.12067 * 11 9 8 13 13 C 1.50870 * 105.27610 * 11.56040 * 12 11 9 14 14 H 1.08997 * 106.52525 * 122.52932 * 13 12 11 15 15 C 1.49815 * 120.18225 * 5.37274 * 6 4 3 16 16 N 1.48060 * 109.90365 * 7.87375 * 13 12 11 17 17 C 1.36942 * 127.83768 * 155.21265 * 16 13 12 18 18 H 1.08003 * 120.00141 * 179.97438 * 17 16 13 19 19 C 1.38817 * 119.99973 * 359.93382 * 17 16 13 20 20 N 1.31617 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99791 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47373 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47058 * 120.00421 * 21 19 17 24 24 H 1.48502 * 109.46794 * 240.00302 * 21 19 17 25 25 N 1.34403 * 108.45818 * 179.97438 * 3 2 1 26 26 N 1.28763 * 109.52329 * 359.70707 * 25 3 2 27 27 N 1.34815 * 126.58012 * 179.97438 * 2 1 3 28 28 C 1.46502 * 126.59312 * 0.02562 * 27 2 1 29 29 C 1.52994 * 109.47340 * 240.00434 * 28 27 2 30 30 C 1.53003 * 109.46739 * 120.00683 * 28 27 2 31 31 H 1.08998 * 109.47324 * 270.02926 * 1 2 3 32 32 H 1.09009 * 109.46973 * 30.02479 * 1 2 3 33 33 H 1.09001 * 109.47143 * 150.02158 * 1 2 3 34 34 H 1.09000 * 108.93115 * 25.26083 * 7 6 4 35 35 H 1.09001 * 108.93099 * 143.93449 * 7 6 4 36 36 H 1.09009 * 108.72426 * 46.33711 * 8 7 6 37 37 H 1.08997 * 108.73091 * 164.51478 * 8 7 6 38 38 H 1.08998 * 110.45032 * 207.84510 * 11 9 8 39 39 H 1.08997 * 110.45225 * 330.39874 * 11 9 8 40 40 H 1.08996 * 110.27910 * 130.50872 * 12 11 9 41 41 H 1.09001 * 110.28126 * 252.60675 * 12 11 9 42 42 H 1.09001 * 109.54949 * 270.55289 * 15 6 4 43 43 H 1.09001 * 109.54827 * 30.83264 * 15 6 4 44 44 H 0.96998 * 119.99960 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.47078 * 0.02562 * 28 27 2 46 46 H 1.09002 * 109.47253 * 60.00385 * 29 28 27 47 47 H 1.09000 * 109.47109 * 180.02562 * 29 28 27 48 48 H 1.08998 * 109.47269 * 300.00140 * 29 28 27 49 49 H 1.08998 * 109.47329 * 60.00191 * 30 28 27 50 50 H 1.09000 * 109.47011 * 180.02562 * 30 28 27 51 51 H 1.09005 * 109.47065 * 300.00332 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6911 2.7644 0.1051 6 7 2.7762 3.4968 -0.1180 7 6 2.3578 4.8777 0.0032 8 6 2.0836 5.5139 -1.3443 9 6 3.3424 5.8425 -2.1169 10 1 3.1147 6.3935 -3.0295 11 6 4.2374 6.6719 -1.1658 12 6 5.0774 5.6186 -0.4148 13 6 4.8464 4.3245 -1.1552 14 1 5.8271 3.9684 -1.4706 15 6 4.2186 3.1790 -0.3687 16 7 4.0818 4.5834 -2.3964 17 6 4.0598 3.8328 -3.5415 18 1 3.4509 4.1419 -4.3783 19 6 4.8208 2.6749 -3.6272 20 7 5.5631 2.2984 -2.6076 21 14 4.7913 1.6514 -5.1895 22 1 3.8841 2.2853 -6.1796 23 1 6.1624 1.5706 -5.7543 24 1 4.3036 0.2842 -4.8763 25 7 3.5984 0.6788 0.0006 26 7 3.6299 -0.6084 0.0071 27 7 2.3104 -1.0826 0.0005 28 6 1.8863 -2.4849 0.0006 29 6 2.4284 -3.1816 1.2501 30 6 2.4297 -3.1820 -1.2483 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 1.4505 4.9207 0.6057 35 1 3.1429 5.4422 0.5062 36 1 1.4774 4.8293 -1.9377 37 1 1.5203 6.4340 -1.1888 38 1 4.8840 7.3387 -1.7362 39 1 3.6251 7.2403 -0.4658 40 1 6.1334 5.8870 -0.4436 41 1 4.7373 5.5296 0.6169 42 1 4.7363 3.0586 0.5829 43 1 4.2941 2.2573 -0.9456 44 1 6.0946 1.4892 -2.6673 45 1 0.7975 -2.5352 -0.0003 46 1 2.0414 -2.6850 2.1399 47 1 2.1133 -4.2250 1.2499 48 1 3.5173 -3.1313 1.2506 49 1 3.5185 -3.1318 -1.2478 50 1 2.1138 -4.2253 -1.2485 51 1 2.0435 -2.6856 -2.1386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045869850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:59 Heat of formation + Delta-G solvation = 91.183987 kcal Electronic energy + Delta-G solvation = -33690.116469 eV Core-core repulsion = 29627.516474 eV Total energy + Delta-G solvation = -4062.599995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.22896 -41.27581 -39.43278 -37.34253 -35.62974 -34.92734 -33.90376 -33.15049 -31.87048 -31.22194 -29.28997 -28.30913 -28.22762 -27.39246 -25.64674 -24.94070 -24.41853 -22.69329 -21.36060 -21.11160 -20.87678 -19.75708 -18.90116 -17.96622 -17.20282 -17.19512 -16.92874 -16.69891 -16.38561 -15.90236 -15.54670 -15.40430 -15.24417 -14.77035 -14.43197 -14.28428 -14.14917 -14.01185 -13.93155 -13.65025 -13.47747 -13.24120 -13.22610 -13.06833 -13.00623 -12.92037 -12.70036 -12.65256 -12.54528 -12.50151 -12.32015 -12.21444 -11.97954 -11.88188 -11.43093 -11.42136 -11.18558 -11.02684 -10.96883 -10.65454 -10.47671 -10.08723 -9.27579 -8.73242 -7.68495 -5.06055 0.21282 0.81679 1.17411 1.38327 1.40243 1.48047 2.20315 2.46022 2.50201 3.27252 3.33839 3.40739 3.58125 3.67993 3.77581 3.79761 3.94995 4.00339 4.15196 4.16768 4.25674 4.29880 4.46160 4.53528 4.57676 4.60811 4.61961 4.65723 4.71917 4.73019 4.77240 4.82401 4.84652 4.94282 5.00437 5.09951 5.13485 5.14179 5.20817 5.24686 5.28591 5.38571 5.44737 5.55129 5.63947 5.66752 5.79735 5.94352 6.23275 6.37359 6.61292 7.04831 7.19629 7.35337 7.84884 8.59575 9.32096 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.005011 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.160140 B = 5586.405934 C = 6992.713971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.118 3.882 3 C -0.131 4.131 4 C 0.589 3.411 5 O -0.579 6.579 6 N -0.579 5.579 7 C 0.113 3.887 8 C -0.135 4.135 9 C 0.138 3.862 10 H 0.060 0.940 11 C -0.116 4.116 12 C -0.120 4.120 13 C 0.146 3.854 14 H 0.059 0.941 15 C 0.117 3.883 16 N -0.599 5.599 17 C -0.216 4.216 18 H 0.069 0.931 19 C -0.053 4.053 20 N -0.916 5.916 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.291 1.291 24 H -0.308 1.308 25 N -0.206 5.206 26 N -0.101 5.101 27 N -0.349 5.349 28 C 0.132 3.868 29 C -0.154 4.154 30 C -0.161 4.161 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.019 0.981 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.130 0.870 44 H 0.241 0.759 45 H 0.143 0.857 46 H 0.061 0.939 47 H 0.116 0.884 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.119 0.881 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -6.101 9.234 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.271 4.271 4 C 0.376 3.624 5 O -0.461 6.461 6 N -0.308 5.308 7 C -0.010 4.010 8 C -0.175 4.175 9 C 0.032 3.968 10 H 0.078 0.922 11 C -0.155 4.155 12 C -0.158 4.158 13 C 0.039 3.961 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.322 5.322 17 C -0.345 4.345 18 H 0.087 0.913 19 C -0.247 4.247 20 N -0.565 5.565 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.218 1.218 24 H -0.236 1.236 25 N -0.078 5.078 26 N -0.080 5.080 27 N -0.136 5.136 28 C 0.032 3.968 29 C -0.212 4.212 30 C -0.218 4.218 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.038 0.962 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.147 0.853 44 H 0.051 0.949 45 H 0.161 0.839 46 H 0.080 0.920 47 H 0.135 0.865 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.138 0.862 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.427 -6.588 9.130 14.063 hybrid contribution -0.419 -0.614 -1.242 1.447 sum -8.846 -7.201 7.888 13.868 Atomic orbital electron populations 1.20730 0.82272 1.05529 1.05655 1.22344 0.97476 0.85893 0.96410 1.21455 0.89684 0.96068 1.19896 1.17058 0.85128 0.83603 0.76628 1.90615 1.16339 1.84138 1.55002 1.48367 1.09845 1.05686 1.66942 1.21039 1.01061 0.81449 0.97410 1.21848 0.99027 1.00092 0.96545 1.21423 0.91742 0.87756 0.95878 0.92219 1.22606 0.98019 0.96760 0.98073 1.21921 1.00180 0.94759 0.98983 1.20610 0.96847 0.92379 0.86220 0.92271 1.23614 0.76067 1.03399 0.97419 1.45127 1.51143 1.24467 1.11467 1.19128 1.21275 1.02798 0.91306 0.91266 1.25188 1.00689 0.99139 0.99640 1.69914 1.32413 1.24837 1.29355 0.85370 0.76981 0.78340 0.80875 1.19931 1.21820 1.23600 1.74909 1.19500 1.04004 1.09391 1.81825 0.98175 1.03699 1.24259 1.50969 1.05264 1.08346 1.49058 1.22167 1.02360 0.73339 0.98902 1.22125 1.01825 1.02444 0.94780 1.22172 1.01749 1.02686 0.95220 0.87209 0.89545 0.87454 0.91091 0.88394 0.96157 0.89143 0.91595 0.88472 0.91504 0.90374 0.95176 0.85291 0.94876 0.83932 0.91961 0.86544 0.92893 0.93153 0.86213 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 9.35 71.23 0.67 -1.31 16 2 C 0.12 3.97 7.02 41.72 0.29 4.26 16 3 C -0.13 -5.66 6.66 40.82 0.27 -5.39 16 4 C 0.59 26.54 7.66 86.69 0.66 27.21 16 5 O -0.58 -25.81 14.33 -4.01 -0.06 -25.87 16 6 N -0.58 -25.56 2.86 -824.95 -2.36 -27.92 16 7 C 0.11 4.18 5.11 86.21 0.44 4.62 16 8 C -0.13 -5.01 5.01 29.56 0.15 -4.86 16 9 C 0.14 5.48 4.08 44.61 0.18 5.66 16 10 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 11 C -0.12 -3.65 6.02 31.60 0.19 -3.46 16 12 C -0.12 -4.27 5.78 30.32 0.18 -4.09 16 13 C 0.15 6.82 1.97 43.82 0.09 6.91 16 14 H 0.06 3.26 6.08 -2.39 -0.01 3.25 16 15 C 0.12 5.61 4.72 85.56 0.40 6.01 16 16 N -0.60 -29.84 2.70 -649.93 -1.75 -31.60 16 17 C -0.22 -12.10 10.40 84.03 0.87 -11.23 16 18 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 19 C -0.05 -2.99 5.48 84.86 0.47 -2.52 16 20 N -0.92 -53.27 8.14 21.65 0.18 -53.10 16 21 Si 0.95 47.63 29.55 68.60 2.03 49.66 16 22 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 25 N -0.21 -9.49 8.95 -49.99 -0.45 -9.93 16 26 N -0.10 -4.11 13.67 37.02 0.51 -3.60 16 27 N -0.35 -10.83 3.28 -313.39 -1.03 -11.86 16 28 C 0.13 2.48 3.68 44.99 0.17 2.64 16 29 C -0.15 -2.36 9.46 71.98 0.68 -1.68 16 30 C -0.16 -3.05 9.47 71.98 0.68 -2.37 16 31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.52 6.57 -2.38 -0.02 2.51 16 33 H 0.11 1.66 7.18 -2.39 -0.02 1.64 16 34 H 0.07 2.53 7.31 -2.39 -0.02 2.51 16 35 H 0.10 3.18 3.92 -2.39 -0.01 3.17 16 36 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.38 7.38 -2.39 -0.02 2.36 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 2.46 6.14 -2.39 -0.01 2.45 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.13 6.95 3.43 -2.39 -0.01 6.94 16 44 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.14 1.63 6.79 -2.39 -0.02 1.61 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 48 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -75.96 383.46 4.40 -71.57 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.94 Total: 22.25 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 6.39 Total: 20.40 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -4.91 Total: -138.01 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.06 Total: -25.87 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.96 4.40 -71.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045869850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.751 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds