Wall clock time and date at job start Wed Apr 1 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36592 * 126.57943 * 2 1 4 4 C 1.47518 * 125.77585 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99727 * 5.76217 * 4 3 2 6 6 N 1.34776 * 120.00453 * 185.76908 * 4 3 2 7 7 C 1.43434 * 120.53901 * 356.07341 * 6 4 3 8 8 C 1.54896 * 116.04074 * 271.70273 * 7 6 4 9 9 C 1.54903 * 110.15526 * 318.68433 * 8 7 6 10 10 C 1.49997 * 110.90394 * 321.07602 * 9 8 7 11 11 C 1.52686 * 105.60235 * 97.55324 * 10 9 8 12 12 C 1.55398 * 108.37363 * 145.75031 * 11 10 9 13 13 C 1.54280 * 102.94580 * 210.11650 * 12 11 10 14 14 N 1.47006 * 107.26311 * 22.40131 * 13 12 11 15 15 C 1.36939 * 125.66340 * 180.87286 * 14 13 12 16 16 H 1.08003 * 120.00238 * 180.02562 * 15 14 13 17 17 C 1.38809 * 119.99449 * 0.03244 * 15 14 13 18 18 N 1.31618 * 120.00460 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99590 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47197 * 120.00114 * 19 17 15 22 22 H 1.48505 * 109.46617 * 239.99785 * 19 17 15 23 23 C 1.47397 * 108.68020 * 1.14535 * 14 13 12 24 24 C 1.46359 * 114.30653 * 271.00149 * 11 10 9 25 25 N 1.34401 * 108.45514 * 180.26545 * 3 2 1 26 26 N 1.28758 * 109.52550 * 359.58949 * 25 3 2 27 27 N 1.34818 * 126.57611 * 180.02562 * 2 1 3 28 28 C 1.46490 * 126.59532 * 359.94035 * 27 2 1 29 29 H 1.08998 * 109.47635 * 89.99162 * 1 2 3 30 30 H 1.08995 * 109.47234 * 209.99827 * 1 2 3 31 31 H 1.09011 * 109.46889 * 329.99470 * 1 2 3 32 32 H 1.08995 * 108.16959 * 33.41287 * 7 6 4 33 33 H 1.08997 * 108.16197 * 149.99923 * 7 6 4 34 34 H 1.08997 * 109.35650 * 78.88999 * 8 7 6 35 35 H 1.09003 * 109.35588 * 198.61458 * 8 7 6 36 36 H 1.09000 * 109.19043 * 81.44048 * 9 8 7 37 37 H 1.08997 * 109.18863 * 200.75581 * 9 8 7 38 38 H 1.09008 * 110.21512 * 338.53889 * 10 9 8 39 39 H 1.08998 * 110.21458 * 216.57706 * 10 9 8 40 40 H 1.08999 * 110.72164 * 91.74620 * 12 11 10 41 41 H 1.09009 * 110.71861 * 328.47845 * 12 11 10 42 42 H 1.09001 * 109.88437 * 262.98955 * 13 12 11 43 43 H 1.08997 * 109.88982 * 141.82027 * 13 12 11 44 44 H 0.96996 * 120.00050 * 180.02562 * 18 17 15 45 45 H 1.08999 * 110.37008 * 94.35754 * 23 14 13 46 46 H 1.09003 * 110.36970 * 216.68951 * 23 14 13 47 47 H 1.08996 * 109.82119 * 177.69559 * 24 11 10 48 48 H 1.09004 * 109.82625 * 298.62931 * 24 11 10 49 49 H 1.09008 * 109.47503 * 90.00060 * 28 27 2 50 50 H 1.09001 * 109.47307 * 210.00357 * 28 27 2 51 51 H 1.09003 * 109.47595 * 329.99750 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8739 2.5027 0.0005 5 8 0.6912 2.7644 0.1068 6 7 2.7761 3.4969 -0.1168 7 6 4.1800 3.2060 -0.1587 8 6 4.9006 3.1338 1.2106 9 6 4.4004 4.2697 2.1375 10 6 4.1922 5.5384 1.3648 11 6 2.6994 5.5858 1.0477 12 6 2.2401 7.0701 1.0737 13 6 0.7676 6.9685 1.5227 14 7 0.6133 5.6865 2.2255 15 6 -0.5499 5.2075 2.7663 16 1 -0.5593 4.2496 3.2652 17 6 -1.7172 5.9530 2.6731 18 7 -1.7057 7.1204 2.0655 19 14 -3.3039 5.2998 3.4115 20 1 -3.0516 3.9757 4.0346 21 1 -3.7965 6.2472 4.4434 22 1 -4.3251 5.1570 2.3428 23 6 1.9200 5.0053 2.2572 24 6 2.3284 4.9268 -0.2053 25 7 3.5983 0.6788 -0.0059 26 7 3.6298 -0.6084 -0.0009 27 7 2.3104 -1.0827 -0.0005 28 6 1.8863 -2.4848 0.0001 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 4.3140 2.2496 -0.6640 33 1 4.6683 3.9731 -0.7596 34 1 4.6949 2.1703 1.6767 35 1 5.9749 3.2402 1.0595 36 1 3.4575 3.9699 2.5948 37 1 5.1386 4.4446 2.9201 38 1 4.7726 5.5171 0.4423 39 1 4.4763 6.3990 1.9703 40 1 2.3107 7.5131 0.0802 41 1 2.8245 7.6421 1.7945 42 1 0.1119 6.9954 0.6524 43 1 0.5276 7.7915 2.1958 44 1 -2.5213 7.6414 2.0007 45 1 2.4420 5.2288 3.1876 46 1 1.7897 3.9291 2.1433 47 1 1.2475 4.9682 -0.3387 48 1 2.8242 5.4184 -1.0424 49 1 1.7802 -2.8329 -1.0274 50 1 2.6333 -3.0902 0.5135 51 1 0.9296 -2.5750 0.5148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045924313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:09 Heat of formation + Delta-G solvation = 122.297574 kcal Electronic energy + Delta-G solvation = -33521.922547 eV Core-core repulsion = 29460.671738 eV Total energy + Delta-G solvation = -4061.250808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.32214 -40.36727 -38.06679 -35.97407 -34.95263 -33.41432 -32.68299 -32.23535 -30.34397 -28.81953 -28.40589 -27.60498 -26.36727 -25.58965 -24.90932 -23.58212 -22.75812 -21.37767 -20.80866 -19.76683 -18.99432 -18.10830 -17.17431 -16.83199 -16.47780 -15.85016 -15.68249 -15.36831 -14.83093 -14.33242 -14.16512 -14.11100 -13.96221 -13.67734 -13.53204 -13.44171 -13.21813 -13.11364 -12.75506 -12.55227 -12.45756 -12.20895 -11.95834 -11.82132 -11.64471 -11.53481 -11.14919 -10.94124 -10.75805 -10.73962 -10.52058 -10.45235 -10.29624 -10.13101 -9.91540 -9.82628 -9.59046 -9.53861 -9.42818 -9.17546 -9.09858 -8.41478 -8.19712 -6.60796 -5.52054 -2.82517 1.09047 1.81572 1.93601 3.24255 3.50787 3.55704 3.57265 3.58334 4.18776 4.19891 4.54465 4.65160 4.66420 4.71779 4.92822 5.05927 5.14964 5.17358 5.23304 5.37385 5.40113 5.43783 5.55074 5.60798 5.65240 5.68197 5.75294 5.84163 5.93620 5.95167 6.09205 6.13851 6.20013 6.28489 6.35278 6.37992 6.39396 6.44628 6.52493 6.59072 6.72709 6.74079 6.77654 6.91284 6.98245 7.09395 7.74858 7.77824 7.78668 7.97361 7.99959 8.45279 8.56165 9.42331 10.03065 10.69612 11.60313 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.004705 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.669994 B = 5949.819505 C = 8024.800623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.123 3.877 3 C -0.096 4.096 4 C 0.595 3.405 5 O -0.507 6.507 6 N -0.590 5.590 7 C 0.100 3.900 8 C -0.123 4.123 9 C -0.142 4.142 10 C -0.101 4.101 11 C -0.097 4.097 12 C -0.135 4.135 13 C 0.178 3.822 14 N -0.600 5.600 15 C -0.205 4.205 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.926 5.926 19 Si 0.906 3.094 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.156 3.844 24 C 0.146 3.854 25 N -0.198 5.198 26 N -0.082 5.082 27 N -0.367 5.367 28 C 0.089 3.911 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.248 0.752 45 H 0.015 0.985 46 H 0.040 0.960 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 -15.054 -7.009 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.015 4.015 3 C -0.235 4.235 4 C 0.380 3.620 5 O -0.380 6.380 6 N -0.321 5.321 7 C -0.026 4.026 8 C -0.163 4.163 9 C -0.179 4.179 10 C -0.139 4.139 11 C -0.099 4.099 12 C -0.174 4.174 13 C 0.053 3.947 14 N -0.325 5.325 15 C -0.334 4.334 16 H 0.091 0.909 17 C -0.207 4.207 18 N -0.575 5.575 19 Si 0.738 3.262 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.030 3.970 24 C 0.026 3.974 25 N -0.070 5.070 26 N -0.061 5.061 27 N -0.154 5.154 28 C -0.053 4.053 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.058 0.942 47 H 0.125 0.875 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.117 0.883 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.303 -15.317 -6.940 20.836 hybrid contribution -1.631 -0.296 0.514 1.736 sum 10.672 -15.613 -6.426 19.974 Atomic orbital electron populations 1.20784 0.84578 1.05900 1.04565 1.21944 0.96283 0.86254 0.96973 1.21370 0.88721 0.95779 1.17650 1.16797 0.85746 0.82196 0.77268 1.90908 1.15700 1.82679 1.48729 1.47728 1.05926 1.06614 1.71865 1.21424 0.80880 1.02762 0.97494 1.22522 0.98896 0.98871 0.95964 1.21924 1.02679 0.95162 0.98179 1.21129 0.95274 0.97534 0.99920 1.20909 0.94917 0.96986 0.97072 1.23126 1.00255 0.93821 1.00229 1.21121 0.88771 0.88587 0.96246 1.44464 1.03969 1.18326 1.65752 1.19015 0.85292 1.01354 1.27746 0.90933 1.24697 0.97520 0.97026 1.01429 1.69965 1.26249 1.12805 1.48480 0.86106 0.84178 0.77717 0.78206 1.20760 1.22141 1.21972 1.21731 0.86641 0.95503 0.93146 1.20840 1.02852 0.77713 0.95968 1.74643 1.18915 1.03364 1.10125 1.81954 0.96137 1.04147 1.23812 1.50209 1.06531 1.07605 1.51022 1.22119 1.02393 0.76301 1.04463 0.89150 0.90856 0.86201 0.88577 0.91977 0.92049 0.91698 0.89623 0.93214 0.92043 0.91800 0.92360 0.92211 0.93773 0.94252 0.94184 0.96735 0.94158 0.87470 0.91491 0.89455 0.88260 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.64 36.01 0.35 -0.73 16 2 C 0.12 1.58 7.02 -81.87 -0.57 1.01 16 3 C -0.10 -1.49 6.69 -83.55 -0.56 -2.05 16 4 C 0.59 10.66 6.63 -12.48 -0.08 10.58 16 5 O -0.51 -10.76 13.92 5.28 0.07 -10.68 16 6 N -0.59 -9.62 2.15 -176.78 -0.38 -10.00 16 7 C 0.10 1.36 4.43 -4.66 -0.02 1.34 16 8 C -0.12 -1.63 6.26 -24.73 -0.15 -1.79 16 9 C -0.14 -2.08 5.18 -27.22 -0.14 -2.22 16 10 C -0.10 -1.47 4.98 -28.38 -0.14 -1.61 16 11 C -0.10 -1.72 0.49 -155.42 -0.08 -1.79 16 12 C -0.14 -2.55 5.84 -24.79 -0.14 -2.69 16 13 C 0.18 4.41 5.01 -3.10 -0.02 4.40 16 14 N -0.60 -15.82 3.35 -169.98 -0.57 -16.39 16 15 C -0.21 -5.99 10.28 -15.06 -0.15 -6.14 16 16 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 18 N -0.93 -28.08 10.31 55.49 0.57 -27.51 16 19 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 C 0.16 3.40 4.25 -2.41 -0.01 3.39 16 24 C 0.15 2.54 4.69 -5.19 -0.02 2.52 16 25 N -0.20 -2.92 7.91 32.84 0.26 -2.66 16 26 N -0.08 -1.11 13.78 60.35 0.83 -0.28 16 27 N -0.37 -4.02 4.03 -63.59 -0.26 -4.28 16 28 C 0.09 0.48 11.33 59.84 0.68 1.15 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 31 H 0.12 1.71 6.33 -51.92 -0.33 1.38 16 32 H 0.10 1.34 4.96 -51.93 -0.26 1.08 16 33 H 0.06 0.75 6.90 -51.93 -0.36 0.39 16 34 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.50 4.04 -51.93 -0.21 1.29 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.79 6.31 -51.92 -0.33 0.46 16 39 H 0.06 0.91 7.36 -51.93 -0.38 0.53 16 40 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.06 1.07 7.44 -51.92 -0.39 0.68 16 42 H 0.04 1.21 7.39 -51.93 -0.38 0.83 16 43 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.02 0.34 7.01 -51.93 -0.36 -0.03 16 46 H 0.04 0.94 5.55 -51.93 -0.29 0.65 16 47 H 0.11 2.29 6.82 -51.93 -0.35 1.94 16 48 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 49 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 50 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.10 0.33 7.16 -51.93 -0.37 -0.04 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.02 376.82 -7.64 -42.65 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.65 Total: 0.40 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.17 Total: 4.92 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.46 Total: -61.10 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.02 -7.64 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045924313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.952 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds