Wall clock time and date at job start Wed Apr 1 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36592 * 126.57943 * 2 1 4 4 C 1.47518 * 125.77585 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99727 * 5.76217 * 4 3 2 6 6 N 1.34776 * 120.00453 * 185.76908 * 4 3 2 7 7 C 1.43434 * 120.53901 * 356.07341 * 6 4 3 8 8 C 1.54896 * 116.04074 * 271.70273 * 7 6 4 9 9 C 1.54903 * 110.15526 * 318.68433 * 8 7 6 10 10 C 1.49997 * 110.90394 * 321.07602 * 9 8 7 11 11 C 1.52686 * 105.60235 * 97.55324 * 10 9 8 12 12 C 1.55398 * 108.37363 * 145.75031 * 11 10 9 13 13 C 1.54280 * 102.94580 * 210.11650 * 12 11 10 14 14 N 1.47006 * 107.26311 * 22.40131 * 13 12 11 15 15 C 1.36939 * 125.66340 * 180.87286 * 14 13 12 16 16 H 1.08003 * 120.00238 * 180.02562 * 15 14 13 17 17 C 1.38809 * 119.99449 * 0.03244 * 15 14 13 18 18 N 1.31618 * 120.00460 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99590 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47197 * 120.00114 * 19 17 15 22 22 H 1.48505 * 109.46617 * 239.99785 * 19 17 15 23 23 C 1.47397 * 108.68020 * 1.14535 * 14 13 12 24 24 C 1.46359 * 114.30653 * 271.00149 * 11 10 9 25 25 N 1.34401 * 108.45514 * 180.26545 * 3 2 1 26 26 N 1.28758 * 109.52550 * 359.58949 * 25 3 2 27 27 N 1.34818 * 126.57611 * 180.02562 * 2 1 3 28 28 C 1.46490 * 126.59532 * 359.94035 * 27 2 1 29 29 H 1.08998 * 109.47635 * 89.99162 * 1 2 3 30 30 H 1.08995 * 109.47234 * 209.99827 * 1 2 3 31 31 H 1.09011 * 109.46889 * 329.99470 * 1 2 3 32 32 H 1.08995 * 108.16959 * 33.41287 * 7 6 4 33 33 H 1.08997 * 108.16197 * 149.99923 * 7 6 4 34 34 H 1.08997 * 109.35650 * 78.88999 * 8 7 6 35 35 H 1.09003 * 109.35588 * 198.61458 * 8 7 6 36 36 H 1.09000 * 109.19043 * 81.44048 * 9 8 7 37 37 H 1.08997 * 109.18863 * 200.75581 * 9 8 7 38 38 H 1.09008 * 110.21512 * 338.53889 * 10 9 8 39 39 H 1.08998 * 110.21458 * 216.57706 * 10 9 8 40 40 H 1.08999 * 110.72164 * 91.74620 * 12 11 10 41 41 H 1.09009 * 110.71861 * 328.47845 * 12 11 10 42 42 H 1.09001 * 109.88437 * 262.98955 * 13 12 11 43 43 H 1.08997 * 109.88982 * 141.82027 * 13 12 11 44 44 H 0.96996 * 120.00050 * 180.02562 * 18 17 15 45 45 H 1.08999 * 110.37008 * 94.35754 * 23 14 13 46 46 H 1.09003 * 110.36970 * 216.68951 * 23 14 13 47 47 H 1.08996 * 109.82119 * 177.69559 * 24 11 10 48 48 H 1.09004 * 109.82625 * 298.62931 * 24 11 10 49 49 H 1.09008 * 109.47503 * 90.00060 * 28 27 2 50 50 H 1.09001 * 109.47307 * 210.00357 * 28 27 2 51 51 H 1.09003 * 109.47595 * 329.99750 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8739 2.5027 0.0005 5 8 0.6912 2.7644 0.1068 6 7 2.7761 3.4969 -0.1168 7 6 4.1800 3.2060 -0.1587 8 6 4.9006 3.1338 1.2106 9 6 4.4004 4.2697 2.1375 10 6 4.1922 5.5384 1.3648 11 6 2.6994 5.5858 1.0477 12 6 2.2401 7.0701 1.0737 13 6 0.7676 6.9685 1.5227 14 7 0.6133 5.6865 2.2255 15 6 -0.5499 5.2075 2.7663 16 1 -0.5593 4.2496 3.2652 17 6 -1.7172 5.9530 2.6731 18 7 -1.7057 7.1204 2.0655 19 14 -3.3039 5.2998 3.4115 20 1 -3.0516 3.9757 4.0346 21 1 -3.7965 6.2472 4.4434 22 1 -4.3251 5.1570 2.3428 23 6 1.9200 5.0053 2.2572 24 6 2.3284 4.9268 -0.2053 25 7 3.5983 0.6788 -0.0059 26 7 3.6298 -0.6084 -0.0009 27 7 2.3104 -1.0827 -0.0005 28 6 1.8863 -2.4848 0.0001 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 4.3140 2.2496 -0.6640 33 1 4.6683 3.9731 -0.7596 34 1 4.6949 2.1703 1.6767 35 1 5.9749 3.2402 1.0595 36 1 3.4575 3.9699 2.5948 37 1 5.1386 4.4446 2.9201 38 1 4.7726 5.5171 0.4423 39 1 4.4763 6.3990 1.9703 40 1 2.3107 7.5131 0.0802 41 1 2.8245 7.6421 1.7945 42 1 0.1119 6.9954 0.6524 43 1 0.5276 7.7915 2.1958 44 1 -2.5213 7.6414 2.0007 45 1 2.4420 5.2288 3.1876 46 1 1.7897 3.9291 2.1433 47 1 1.2475 4.9682 -0.3387 48 1 2.8242 5.4184 -1.0424 49 1 1.7802 -2.8329 -1.0274 50 1 2.6333 -3.0902 0.5135 51 1 0.9296 -2.5750 0.5148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045924313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:07 Heat of formation + Delta-G solvation = 98.876054 kcal Electronic energy + Delta-G solvation = -33522.938180 eV Core-core repulsion = 29460.671738 eV Total energy + Delta-G solvation = -4062.266441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.34290 -41.75723 -39.53541 -37.47102 -35.95030 -34.96473 -34.18344 -33.28821 -32.21315 -30.50701 -29.42343 -28.36347 -27.62217 -27.49806 -26.24330 -25.13369 -24.08411 -22.60236 -22.00284 -21.40935 -20.13943 -19.56249 -18.89380 -18.25153 -17.44867 -17.13935 -16.97242 -16.74014 -16.54369 -15.97745 -15.49620 -15.24024 -15.20284 -15.14730 -14.74765 -14.41105 -14.23031 -14.15587 -14.03395 -13.99461 -13.66639 -13.45869 -13.32833 -13.21107 -13.14054 -12.88010 -12.80438 -12.68564 -12.46000 -12.28938 -12.02320 -11.92234 -11.81693 -11.61990 -11.45083 -11.26788 -11.12402 -11.01693 -10.92382 -10.63942 -10.59623 -10.18776 -9.48680 -8.78402 -7.78295 -5.10486 0.11407 0.66019 1.12991 1.41527 1.44130 1.53683 1.99688 2.29568 2.52702 3.18676 3.39281 3.40061 3.59154 3.62914 3.74576 3.82743 3.95963 4.04971 4.17593 4.22849 4.29375 4.33417 4.35660 4.45282 4.54096 4.59786 4.61910 4.63764 4.68424 4.74426 4.80665 4.86108 4.92372 4.96200 5.01062 5.03740 5.07768 5.17565 5.19192 5.28413 5.40981 5.45216 5.46140 5.51337 5.57867 5.63106 5.72370 5.76281 5.85730 6.27689 6.53088 6.89898 7.18841 7.26209 7.86963 8.51248 9.32222 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.004705 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.669994 B = 5949.819505 C = 8024.800623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.125 3.875 3 C -0.126 4.126 4 C 0.588 3.412 5 O -0.555 6.555 6 N -0.586 5.586 7 C 0.095 3.905 8 C -0.115 4.115 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.080 4.080 12 C -0.121 4.121 13 C 0.187 3.813 14 N -0.619 5.619 15 C -0.220 4.220 16 H 0.063 0.937 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.292 1.292 23 C 0.161 3.839 24 C 0.147 3.853 25 N -0.203 5.203 26 N -0.093 5.093 27 N -0.352 5.352 28 C 0.073 3.927 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.006 0.994 43 H 0.002 0.998 44 H 0.244 0.756 45 H 0.012 0.988 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 -16.816 -7.763 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.014 4.014 3 C -0.265 4.265 4 C 0.375 3.625 5 O -0.433 6.433 6 N -0.316 5.316 7 C -0.029 4.029 8 C -0.153 4.153 9 C -0.177 4.177 10 C -0.128 4.128 11 C -0.082 4.082 12 C -0.160 4.160 13 C 0.062 3.938 14 N -0.345 5.345 15 C -0.350 4.350 16 H 0.081 0.919 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.219 1.219 23 C 0.036 3.964 24 C 0.027 3.973 25 N -0.076 5.076 26 N -0.072 5.072 27 N -0.138 5.138 28 C -0.066 4.066 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.123 0.877 49 H 0.129 0.871 50 H 0.132 0.868 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.734 -17.125 -7.691 23.864 hybrid contribution -2.377 0.103 0.767 2.499 sum 12.358 -17.022 -6.924 22.145 Atomic orbital electron populations 1.20765 0.83352 1.05756 1.05425 1.22154 0.97039 0.86261 0.95942 1.21208 0.89848 0.95207 1.20254 1.17201 0.85350 0.83510 0.76446 1.90883 1.17678 1.83618 1.51088 1.47773 1.07031 1.05780 1.71066 1.21626 0.79222 1.03805 0.98280 1.22476 1.00468 0.97380 0.95011 1.21827 1.01316 0.95713 0.98890 1.21116 0.92316 0.97816 1.01543 1.20853 0.96883 0.95357 0.95121 1.23030 0.95707 0.95188 1.02042 1.20878 0.92438 0.86827 0.93702 1.44751 1.04885 1.19364 1.65486 1.19232 0.86979 1.01062 1.27732 0.91946 1.25488 1.00573 0.97464 1.02323 1.70185 1.26592 1.13765 1.49558 0.85120 0.80053 0.77548 0.77363 1.19668 1.21646 1.21878 1.21823 0.85237 0.94281 0.95063 1.20734 1.00521 0.78955 0.97107 1.74590 1.18569 1.03942 1.10525 1.81841 0.97641 1.03740 1.23988 1.50514 1.05246 1.09041 1.49016 1.22691 1.03972 0.73273 1.06623 0.87729 0.87080 0.90105 0.88556 0.89239 0.93733 0.88597 0.93343 0.91565 0.88850 0.90690 0.89498 0.90431 0.97585 0.98012 0.94700 0.97034 0.96067 0.92272 0.87730 0.87120 0.86814 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 9.64 71.24 0.69 -1.32 16 2 C 0.13 3.16 7.02 41.72 0.29 3.45 16 3 C -0.13 -3.95 6.69 40.81 0.27 -3.68 16 4 C 0.59 21.95 6.63 86.69 0.57 22.53 16 5 O -0.56 -25.37 13.92 -4.02 -0.06 -25.43 16 6 N -0.59 -19.02 2.15 -831.47 -1.79 -20.81 16 7 C 0.09 2.37 4.43 87.59 0.39 2.76 16 8 C -0.11 -2.74 6.26 31.89 0.20 -2.54 16 9 C -0.14 -3.80 5.18 30.28 0.16 -3.64 16 10 C -0.09 -2.32 4.98 29.52 0.15 -2.18 16 11 C -0.08 -2.78 0.49 -52.77 -0.03 -2.81 16 12 C -0.12 -4.46 5.84 31.85 0.19 -4.27 16 13 C 0.19 9.73 5.01 86.72 0.43 10.17 16 14 N -0.62 -34.48 3.35 -691.70 -2.31 -36.80 16 15 C -0.22 -13.57 10.28 84.03 0.86 -12.71 16 16 H 0.06 3.85 7.83 -2.91 -0.02 3.83 16 17 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 18 N -0.95 -60.56 10.31 21.65 0.22 -60.34 16 19 Si 0.97 49.42 29.55 68.60 2.03 51.45 16 20 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 23 C 0.16 7.28 4.25 86.94 0.37 7.64 16 24 C 0.15 5.08 4.69 83.63 0.39 5.47 16 25 N -0.20 -5.87 7.91 -50.00 -0.40 -6.26 16 26 N -0.09 -2.39 13.78 37.02 0.51 -1.88 16 27 N -0.35 -7.05 4.03 -355.11 -1.43 -8.49 16 28 C 0.07 0.55 11.33 127.77 1.45 2.00 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.11 1.43 7.18 -2.39 -0.02 1.41 16 31 H 0.08 2.46 6.33 -2.38 -0.02 2.45 16 32 H 0.10 2.51 4.96 -2.39 -0.01 2.50 16 33 H 0.09 1.77 6.90 -2.39 -0.02 1.76 16 34 H 0.04 1.23 7.31 -2.39 -0.02 1.21 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.70 4.04 -2.39 -0.01 1.69 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.89 6.31 -2.38 -0.02 1.87 16 39 H 0.07 1.83 7.36 -2.39 -0.02 1.81 16 40 H 0.09 2.73 8.04 -2.39 -0.02 2.71 16 41 H 0.08 2.61 7.44 -2.38 -0.02 2.59 16 42 H 0.01 0.35 7.39 -2.39 -0.02 0.33 16 43 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 44 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.01 0.55 7.01 -2.39 -0.02 0.53 16 46 H 0.02 1.04 5.55 -2.39 -0.01 1.03 16 47 H 0.06 2.66 6.82 -2.39 -0.02 2.64 16 48 H 0.10 2.81 8.12 -2.39 -0.02 2.79 16 49 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 50 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.12 0.37 7.16 -2.39 -0.02 0.35 16 Total: -1.00 -84.18 376.82 4.58 -79.60 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.95 Total: 11.68 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.85 Total: 17.28 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -5.20 Total: -134.57 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.06 Total: -25.43 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -84.18 4.58 -79.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045924313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.476 kcal (2) G-P(sol) polarization free energy of solvation -84.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds