Wall clock time and date at job start Wed Apr 1 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46785 * 2 1 4 4 C 1.35362 * 126.38101 * 275.29892 * 3 2 1 5 5 C 1.41499 * 105.50069 * 180.14312 * 4 3 2 6 6 C 1.47717 * 126.52075 * 179.84449 * 5 4 3 7 7 O 1.21574 * 119.99947 * 6.15035 * 6 5 4 8 8 N 1.34772 * 120.00126 * 186.15622 * 6 5 4 9 9 C 1.47080 * 120.88085 * 186.13000 * 8 6 5 10 10 C 1.53240 * 108.51989 * 231.20453 * 9 8 6 11 11 N 1.46897 * 109.33978 * 306.16800 * 10 9 8 12 12 C 1.46903 * 111.00056 * 187.25412 * 11 10 9 13 13 H 1.09007 * 110.64013 * 296.06420 * 12 11 10 14 14 C 1.55153 * 110.72210 * 59.20540 * 12 11 10 15 15 C 1.54903 * 101.58513 * 153.86574 * 14 12 11 16 16 N 1.47428 * 104.83221 * 322.99132 * 15 14 12 17 17 C 1.36934 * 125.64977 * 204.09188 * 16 15 14 18 18 H 1.07997 * 120.00334 * 168.06963 * 17 16 15 19 19 C 1.38807 * 119.99995 * 348.07196 * 17 16 15 20 20 N 1.31621 * 119.99792 * 324.67068 * 19 17 16 21 21 Si 1.86797 * 120.00278 * 144.67431 * 19 17 16 22 22 H 1.48500 * 109.47009 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47208 * 240.00041 * 21 19 17 24 24 H 1.48502 * 109.47343 * 119.99945 * 21 19 17 25 25 C 1.47026 * 108.70024 * 24.35414 * 16 15 14 26 26 C 1.46904 * 111.26832 * 63.10545 * 11 10 9 27 27 C 1.47081 * 120.88443 * 6.14689 * 8 6 5 28 28 N 1.31803 * 106.96373 * 359.57847 * 5 4 3 29 29 N 1.28469 * 110.07537 * 0.26659 * 28 5 4 30 30 H 0.96993 * 124.88539 * 179.97438 * 29 28 5 31 31 H 1.09005 * 109.47560 * 300.00065 * 1 2 3 32 32 H 1.08994 * 109.47185 * 60.00673 * 1 2 3 33 33 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47173 * 239.99606 * 2 1 3 35 35 H 1.09004 * 109.47015 * 119.99374 * 2 1 3 36 36 H 1.08000 * 127.25604 * 359.97438 * 4 3 2 37 37 H 1.08993 * 109.63052 * 111.49232 * 9 8 6 38 38 H 1.09001 * 109.63033 * 350.90878 * 9 8 6 39 39 H 1.09004 * 109.49526 * 186.20664 * 10 9 8 40 40 H 1.09007 * 109.49570 * 66.13078 * 10 9 8 41 41 H 1.09000 * 111.00221 * 35.78578 * 14 12 11 42 42 H 1.09007 * 111.03655 * 271.95847 * 14 12 11 43 43 H 1.09003 * 110.37065 * 204.15129 * 15 14 12 44 44 H 1.09000 * 110.36859 * 81.82917 * 15 14 12 45 45 H 0.96994 * 120.00340 * 354.36377 * 20 19 17 46 46 H 1.09002 * 109.87813 * 118.13430 * 25 16 15 47 47 H 1.09001 * 109.87863 * 239.29663 * 25 16 15 48 48 H 1.09003 * 109.49233 * 56.85760 * 26 11 10 49 49 H 1.08997 * 109.48973 * 176.93770 * 26 11 10 50 50 H 1.08993 * 109.63128 * 248.50872 * 27 8 6 51 51 H 1.09003 * 109.62668 * 9.08381 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2050 2.2114 -1.0851 5 6 2.6927 3.4412 -0.5833 6 6 3.0424 4.6375 -1.3761 7 8 2.8151 4.6632 -2.5701 8 7 3.6136 5.7005 -0.7759 9 6 3.8475 6.9498 -1.5159 10 6 5.3107 7.3626 -1.3240 11 7 5.6142 7.4251 0.1119 12 6 6.9538 7.9821 0.3431 13 1 7.7191 7.3296 -0.0775 14 6 7.0641 9.4112 -0.2507 15 6 8.1704 10.0327 0.6377 16 7 7.9269 9.4827 1.9837 17 6 8.3174 10.0578 3.1634 18 1 7.9305 9.6847 4.1002 19 6 9.2104 11.1205 3.1554 20 7 10.1769 11.1611 2.2629 21 14 9.0407 12.4927 4.4114 22 1 7.8817 12.2128 5.2967 23 1 8.8258 13.7832 3.7087 24 1 10.2791 12.5733 5.2270 25 6 7.2009 8.2113 1.8491 26 6 5.4764 6.1060 0.7436 27 6 4.0199 5.6418 0.6364 28 7 2.7701 3.3184 0.7267 29 7 2.3881 2.1447 1.0829 30 1 2.3597 1.8245 1.9980 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0137 1.9563 -2.1170 37 1 3.1930 7.7316 -1.1307 38 1 3.6480 6.7905 -2.5757 39 1 5.4743 8.3421 -1.7734 40 1 5.9611 6.6297 -1.8017 41 1 6.1247 9.9532 -0.1415 42 1 7.3743 9.3781 -1.2952 43 1 8.0815 11.1190 0.6500 44 1 9.1561 9.7360 0.2793 45 1 10.3158 10.4110 1.6639 46 1 7.8005 7.3972 2.2566 47 1 6.2477 8.2714 2.3744 48 1 6.1244 5.3906 0.2372 49 1 5.7600 6.1743 1.7938 50 1 3.3820 6.2978 1.2286 51 1 3.9344 4.6177 0.9998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046006255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:56 Heat of formation + Delta-G solvation = 85.475202 kcal Electronic energy + Delta-G solvation = -30836.490454 eV Core-core repulsion = 26773.642908 eV Total energy + Delta-G solvation = -4062.847546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.11537 -40.09826 -38.55506 -36.73220 -34.91875 -34.26899 -32.46879 -32.00086 -31.23853 -29.80577 -29.12667 -28.12234 -26.19405 -24.40915 -24.22760 -24.07290 -23.09151 -21.46431 -21.13461 -20.06661 -19.75323 -18.94216 -18.20596 -17.45425 -17.01853 -16.26248 -16.12681 -15.51253 -15.15435 -14.99214 -14.80616 -14.70604 -14.43526 -14.14030 -13.96122 -13.73336 -13.66691 -13.29253 -13.07633 -13.01621 -12.93207 -12.48295 -12.18618 -12.13219 -11.83188 -11.68401 -11.60519 -11.34461 -11.24693 -10.83565 -10.67034 -10.43938 -10.39258 -10.25715 -10.14072 -10.05699 -9.99128 -9.73947 -9.60170 -9.34967 -8.81619 -8.27381 -8.14718 -6.90994 -6.12765 -3.02655 1.24109 1.72709 2.38858 2.86485 3.18744 3.55935 3.58843 3.73317 3.90427 4.03498 4.14219 4.34173 4.64492 4.67662 4.70678 4.92438 4.95043 4.97576 5.06356 5.14084 5.22400 5.25838 5.27058 5.31618 5.33264 5.44142 5.48381 5.52096 5.59197 5.63331 5.67491 5.73724 5.75882 5.80767 5.87360 5.99690 6.08593 6.13525 6.34708 6.35701 6.40881 6.59898 6.62938 6.64808 6.99202 7.09612 7.19124 7.21260 7.38831 7.50286 7.85461 8.01120 8.52986 9.05060 9.86643 10.43635 11.22270 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.002042 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.611578 B =13711.735933 C =14578.981491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.019 3.981 4 C -0.175 4.175 5 C -0.004 4.004 6 C 0.602 3.398 7 O -0.538 6.538 8 N -0.598 5.598 9 C 0.118 3.882 10 C 0.042 3.958 11 N -0.526 5.526 12 C 0.072 3.928 13 H 0.043 0.957 14 C -0.126 4.126 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.341 4.341 18 H 0.066 0.934 19 C -0.023 4.023 20 N -0.908 5.908 21 Si 1.059 2.941 22 H -0.292 1.292 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.148 3.852 26 C 0.041 3.959 27 C 0.096 3.904 28 N -0.255 5.255 29 N -0.382 5.382 30 H 0.444 0.556 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.268 0.732 46 H 0.016 0.984 47 H 0.038 0.962 48 H 0.032 0.968 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.925 -22.725 -5.977 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.107 4.107 4 C -0.203 4.203 5 C -0.164 4.164 6 C 0.388 3.612 7 O -0.414 6.414 8 N -0.331 5.331 9 C -0.005 4.005 10 C -0.087 4.087 11 N -0.251 5.251 12 C -0.036 4.036 13 H 0.061 0.939 14 C -0.164 4.164 15 C 0.020 3.980 16 N -0.328 5.328 17 C -0.468 4.468 18 H 0.084 0.916 19 C -0.225 4.225 20 N -0.548 5.548 21 Si 0.889 3.111 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.224 1.224 25 C 0.022 3.978 26 C -0.088 4.088 27 C -0.028 4.028 28 N -0.091 5.091 29 N -0.095 5.095 30 H 0.289 0.711 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.179 0.821 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.461 -20.278 -4.908 27.858 hybrid contribution -0.055 -2.611 -0.861 2.750 sum -18.516 -22.889 -5.769 30.001 Atomic orbital electron populations 1.21789 0.93887 1.02373 1.02738 1.20142 0.96536 0.88595 1.04130 1.21468 1.05043 0.96843 0.87297 1.21482 1.06794 0.92185 0.99877 1.21923 1.07757 0.96884 0.89848 1.16983 0.77456 0.80890 0.85874 1.90777 1.55394 1.81273 1.13960 1.48019 1.59358 1.12804 1.12885 1.21792 0.96170 0.84710 0.97779 1.22459 0.95321 1.01638 0.89260 1.62017 1.28492 1.22904 1.11648 1.22665 0.87261 0.95606 0.98057 0.93929 1.22880 1.00793 0.94811 0.97960 1.21471 0.94020 0.97699 0.84831 1.44535 1.66463 1.19779 1.02009 1.19691 1.26028 1.16581 0.84528 0.91589 1.25629 0.92475 1.01310 1.03094 1.70730 1.25130 1.35807 1.23097 0.83653 0.75265 0.76829 0.75353 1.21807 1.21671 1.22372 1.21238 0.95739 0.89172 0.91667 1.22500 0.95886 0.89582 1.00847 1.22555 0.94703 1.04878 0.80619 1.73462 1.18396 1.02336 1.14917 1.43499 1.47308 1.08779 1.09955 0.71135 0.92640 0.91812 0.91644 0.88938 0.90521 0.82052 0.90358 0.88683 0.89049 0.94697 0.90583 0.92275 0.92884 0.96124 0.92141 0.96629 0.94435 0.94936 0.89081 0.90608 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.89 37.16 0.37 -0.14 16 2 C -0.06 -0.19 6.49 -27.88 -0.18 -0.37 16 3 C 0.02 0.13 6.48 -82.21 -0.53 -0.40 16 4 C -0.18 -1.68 10.73 -39.37 -0.42 -2.11 16 5 C 0.00 -0.05 6.83 -82.77 -0.57 -0.61 16 6 C 0.60 8.39 7.70 -12.39 -0.10 8.30 16 7 O -0.54 -8.78 16.39 5.30 0.09 -8.69 16 8 N -0.60 -7.81 3.01 -173.63 -0.52 -8.34 16 9 C 0.12 1.47 6.61 -3.60 -0.02 1.45 16 10 C 0.04 0.56 5.46 -3.70 -0.02 0.54 16 11 N -0.53 -7.92 4.45 -224.14 -1.00 -8.92 16 12 C 0.07 1.29 2.64 -65.87 -0.17 1.11 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.13 -2.31 5.31 -24.59 -0.13 -2.44 16 15 C 0.15 3.46 5.37 -2.53 -0.01 3.44 16 16 N -0.60 -15.61 3.33 -170.07 -0.57 -16.18 16 17 C -0.34 -9.85 9.95 -15.06 -0.15 -10.00 16 18 H 0.07 1.91 8.03 -52.49 -0.42 1.49 16 19 C -0.02 -0.67 4.93 -17.43 -0.09 -0.75 16 20 N -0.91 -27.74 12.90 55.49 0.72 -27.03 16 21 Si 1.06 25.82 30.04 -169.99 -5.11 20.72 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.15 3.18 5.74 -3.06 -0.02 3.16 16 26 C 0.04 0.55 5.47 -3.70 -0.02 0.53 16 27 C 0.10 1.16 6.25 -3.60 -0.02 1.14 16 28 N -0.26 -2.56 8.72 33.42 0.29 -2.27 16 29 N -0.38 -2.58 6.83 33.50 0.23 -2.36 16 30 H 0.44 1.45 8.96 -190.45 -1.71 -0.26 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.18 7.04 -51.93 -0.37 0.82 16 39 H 0.09 1.15 6.75 -51.93 -0.35 0.80 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.06 0.95 7.93 -51.93 -0.41 0.53 16 43 H 0.05 1.37 7.85 -51.93 -0.41 0.96 16 44 H 0.02 0.52 7.07 -51.93 -0.37 0.16 16 45 H 0.27 8.25 6.58 -40.82 -0.27 7.98 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.04 0.82 7.78 -51.93 -0.40 0.41 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 1.26 6.88 -51.93 -0.36 0.90 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.12 1.40 4.28 -61.76 -0.26 1.14 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -35.16 397.75 -11.58 -46.74 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -9.62 Total: -2.51 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.09 Total: 2.84 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.85 Total: -65.09 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.11 Total: 20.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.16 -11.58 -46.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046006255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.211 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds