Wall clock time and date at job start Wed Apr 1 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46785 * 2 1 4 4 C 1.35362 * 126.38101 * 275.29892 * 3 2 1 5 5 C 1.41499 * 105.50069 * 180.14312 * 4 3 2 6 6 C 1.47717 * 126.52075 * 179.84449 * 5 4 3 7 7 O 1.21574 * 119.99947 * 6.15035 * 6 5 4 8 8 N 1.34772 * 120.00126 * 186.15622 * 6 5 4 9 9 C 1.47080 * 120.88085 * 186.13000 * 8 6 5 10 10 C 1.53240 * 108.51989 * 231.20453 * 9 8 6 11 11 N 1.46897 * 109.33978 * 306.16800 * 10 9 8 12 12 C 1.46903 * 111.00056 * 187.25412 * 11 10 9 13 13 H 1.09007 * 110.64013 * 296.06420 * 12 11 10 14 14 C 1.55153 * 110.72210 * 59.20540 * 12 11 10 15 15 C 1.54903 * 101.58513 * 153.86574 * 14 12 11 16 16 N 1.47428 * 104.83221 * 322.99132 * 15 14 12 17 17 C 1.36934 * 125.64977 * 204.09188 * 16 15 14 18 18 H 1.07997 * 120.00334 * 168.06963 * 17 16 15 19 19 C 1.38807 * 119.99995 * 348.07196 * 17 16 15 20 20 N 1.31621 * 119.99792 * 324.67068 * 19 17 16 21 21 Si 1.86797 * 120.00278 * 144.67431 * 19 17 16 22 22 H 1.48500 * 109.47009 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47208 * 240.00041 * 21 19 17 24 24 H 1.48502 * 109.47343 * 119.99945 * 21 19 17 25 25 C 1.47026 * 108.70024 * 24.35414 * 16 15 14 26 26 C 1.46904 * 111.26832 * 63.10545 * 11 10 9 27 27 C 1.47081 * 120.88443 * 6.14689 * 8 6 5 28 28 N 1.31803 * 106.96373 * 359.57847 * 5 4 3 29 29 N 1.28469 * 110.07537 * 0.26659 * 28 5 4 30 30 H 0.96993 * 124.88539 * 179.97438 * 29 28 5 31 31 H 1.09005 * 109.47560 * 300.00065 * 1 2 3 32 32 H 1.08994 * 109.47185 * 60.00673 * 1 2 3 33 33 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47173 * 239.99606 * 2 1 3 35 35 H 1.09004 * 109.47015 * 119.99374 * 2 1 3 36 36 H 1.08000 * 127.25604 * 359.97438 * 4 3 2 37 37 H 1.08993 * 109.63052 * 111.49232 * 9 8 6 38 38 H 1.09001 * 109.63033 * 350.90878 * 9 8 6 39 39 H 1.09004 * 109.49526 * 186.20664 * 10 9 8 40 40 H 1.09007 * 109.49570 * 66.13078 * 10 9 8 41 41 H 1.09000 * 111.00221 * 35.78578 * 14 12 11 42 42 H 1.09007 * 111.03655 * 271.95847 * 14 12 11 43 43 H 1.09003 * 110.37065 * 204.15129 * 15 14 12 44 44 H 1.09000 * 110.36859 * 81.82917 * 15 14 12 45 45 H 0.96994 * 120.00340 * 354.36377 * 20 19 17 46 46 H 1.09002 * 109.87813 * 118.13430 * 25 16 15 47 47 H 1.09001 * 109.87863 * 239.29663 * 25 16 15 48 48 H 1.09003 * 109.49233 * 56.85760 * 26 11 10 49 49 H 1.08997 * 109.48973 * 176.93770 * 26 11 10 50 50 H 1.08993 * 109.63128 * 248.50872 * 27 8 6 51 51 H 1.09003 * 109.62668 * 9.08381 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2050 2.2114 -1.0851 5 6 2.6927 3.4412 -0.5833 6 6 3.0424 4.6375 -1.3761 7 8 2.8151 4.6632 -2.5701 8 7 3.6136 5.7005 -0.7759 9 6 3.8475 6.9498 -1.5159 10 6 5.3107 7.3626 -1.3240 11 7 5.6142 7.4251 0.1119 12 6 6.9538 7.9821 0.3431 13 1 7.7191 7.3296 -0.0775 14 6 7.0641 9.4112 -0.2507 15 6 8.1704 10.0327 0.6377 16 7 7.9269 9.4827 1.9837 17 6 8.3174 10.0578 3.1634 18 1 7.9305 9.6847 4.1002 19 6 9.2104 11.1205 3.1554 20 7 10.1769 11.1611 2.2629 21 14 9.0407 12.4927 4.4114 22 1 7.8817 12.2128 5.2967 23 1 8.8258 13.7832 3.7087 24 1 10.2791 12.5733 5.2270 25 6 7.2009 8.2113 1.8491 26 6 5.4764 6.1060 0.7436 27 6 4.0199 5.6418 0.6364 28 7 2.7701 3.3184 0.7267 29 7 2.3881 2.1447 1.0829 30 1 2.3597 1.8245 1.9980 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0137 1.9563 -2.1170 37 1 3.1930 7.7316 -1.1307 38 1 3.6480 6.7905 -2.5757 39 1 5.4743 8.3421 -1.7734 40 1 5.9611 6.6297 -1.8017 41 1 6.1247 9.9532 -0.1415 42 1 7.3743 9.3781 -1.2952 43 1 8.0815 11.1190 0.6500 44 1 9.1561 9.7360 0.2793 45 1 10.3158 10.4110 1.6639 46 1 7.8005 7.3972 2.2566 47 1 6.2477 8.2714 2.3744 48 1 6.1244 5.3906 0.2372 49 1 5.7600 6.1743 1.7938 50 1 3.3820 6.2978 1.2286 51 1 3.9344 4.6177 0.9998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046006255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:54 Heat of formation + Delta-G solvation = 61.441884 kcal Electronic energy + Delta-G solvation = -30837.532617 eV Core-core repulsion = 26773.642908 eV Total energy + Delta-G solvation = -4063.889709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.79831 -41.20142 -39.94009 -38.19930 -35.86014 -35.19069 -34.00133 -33.12495 -32.24688 -31.03006 -30.27292 -29.60981 -27.62867 -25.98819 -25.26261 -24.76402 -24.22791 -22.24681 -22.04523 -21.91491 -21.20554 -19.93244 -19.55193 -18.90127 -17.94505 -17.25013 -17.06231 -16.81878 -16.55521 -16.03603 -15.92128 -15.74238 -15.39021 -15.32932 -15.16244 -14.94241 -14.90167 -14.76781 -14.30714 -14.20902 -13.83298 -13.55157 -13.34605 -13.27442 -12.85515 -12.69414 -12.60276 -12.46821 -12.45352 -12.32936 -12.15787 -11.90965 -11.87948 -11.82898 -11.71579 -11.66694 -11.51453 -11.07999 -10.49712 -10.45386 -9.98389 -9.89100 -9.35904 -9.04211 -8.41374 -5.27328 0.40920 1.07350 1.57988 1.65187 1.68656 1.83426 2.04685 2.22925 2.59550 2.76465 3.11212 3.20851 3.54742 3.58731 3.64622 3.76810 3.87435 3.94646 4.00091 4.13702 4.18707 4.23171 4.32358 4.35592 4.41725 4.42221 4.49896 4.51243 4.58549 4.67964 4.76546 4.79894 4.81007 4.86056 4.86783 4.89238 4.99510 5.03137 5.08323 5.08377 5.18829 5.25255 5.30349 5.38917 5.45838 5.67452 5.95075 6.00114 6.08704 6.26973 6.28523 6.76756 6.86972 7.02385 7.70284 8.29437 8.93313 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.002042 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.611578 B =13711.735933 C =14578.981491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.033 4.033 6 C 0.598 3.402 7 O -0.571 6.571 8 N -0.600 5.600 9 C 0.120 3.880 10 C 0.046 3.954 11 N -0.528 5.528 12 C 0.090 3.910 13 H 0.044 0.956 14 C -0.107 4.107 15 C 0.147 3.853 16 N -0.623 5.623 17 C -0.353 4.353 18 H 0.059 0.941 19 C -0.074 4.074 20 N -0.933 5.933 21 Si 1.113 2.887 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.148 3.852 26 C 0.043 3.957 27 C 0.105 3.895 28 N -0.265 5.265 29 N -0.365 5.365 30 H 0.461 0.539 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.161 0.839 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.002 0.998 45 H 0.253 0.747 46 H 0.009 0.991 47 H 0.038 0.962 48 H 0.030 0.970 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.618 -24.332 -5.380 32.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.086 4.086 4 C -0.226 4.226 5 C -0.192 4.192 6 C 0.386 3.614 7 O -0.449 6.449 8 N -0.332 5.332 9 C -0.002 4.002 10 C -0.082 4.082 11 N -0.253 5.253 12 C -0.019 4.019 13 H 0.062 0.938 14 C -0.145 4.145 15 C 0.021 3.979 16 N -0.351 5.351 17 C -0.481 4.481 18 H 0.077 0.923 19 C -0.271 4.271 20 N -0.574 5.574 21 Si 0.938 3.062 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.217 1.217 25 C 0.023 3.977 26 C -0.086 4.086 27 C -0.018 4.018 28 N -0.102 5.102 29 N -0.081 5.081 30 H 0.309 0.691 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.179 0.821 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.042 0.958 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.174 -21.914 -4.291 30.094 hybrid contribution 0.424 -2.254 -1.007 2.505 sum -19.750 -24.167 -5.298 31.658 Atomic orbital electron populations 1.21782 0.93658 1.03207 1.02054 1.20303 0.96528 0.86436 1.05837 1.21864 1.02823 0.97717 0.86172 1.21650 1.07911 0.92162 1.00890 1.21760 1.09874 0.96949 0.90581 1.17311 0.76910 0.81486 0.85722 1.90743 1.56820 1.82006 1.15335 1.48110 1.59104 1.12836 1.13150 1.21786 0.95726 0.84785 0.97919 1.22487 0.95662 1.02216 0.87849 1.61982 1.26374 1.23849 1.13083 1.22364 0.88906 0.95498 0.95112 0.93840 1.22742 0.98877 0.94451 0.98474 1.21417 0.95128 0.96230 0.85089 1.44823 1.66446 1.21695 1.02097 1.19932 1.25518 1.17116 0.85559 0.92303 1.27040 0.91998 1.03425 1.04639 1.70859 1.26730 1.35492 1.24363 0.82924 0.75948 0.73876 0.73490 1.19882 1.21299 1.21720 1.21307 0.94791 0.87119 0.94504 1.22519 0.96861 0.88743 1.00460 1.22522 0.93505 1.05509 0.80235 1.73301 1.19000 1.03803 1.14124 1.43580 1.45700 1.07823 1.11009 0.69093 0.92793 0.93068 0.90080 0.88014 0.88051 0.82094 0.89652 0.88653 0.87960 0.94981 0.90094 0.89175 0.95817 0.98004 0.93721 0.97306 0.94438 0.95134 0.89377 0.90509 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 71.98 0.71 0.07 16 2 C -0.05 -0.21 6.49 29.85 0.19 -0.01 16 3 C 0.04 0.47 6.48 41.40 0.27 0.74 16 4 C -0.20 -3.64 10.73 22.41 0.24 -3.40 16 5 C -0.03 -0.76 6.83 42.46 0.29 -0.47 16 6 C 0.60 16.58 7.70 86.75 0.67 17.25 16 7 O -0.57 -18.82 16.39 -3.95 -0.06 -18.89 16 8 N -0.60 -15.20 3.01 -821.51 -2.47 -17.67 16 9 C 0.12 2.86 6.61 86.35 0.57 3.43 16 10 C 0.05 1.14 5.46 86.38 0.47 1.61 16 11 N -0.53 -15.12 4.45 -863.05 -3.84 -18.97 16 12 C 0.09 3.10 2.64 46.10 0.12 3.22 16 13 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 14 C -0.11 -3.81 5.31 31.98 0.17 -3.64 16 15 C 0.15 7.10 5.37 86.85 0.47 7.57 16 16 N -0.62 -32.91 3.33 -691.97 -2.30 -35.21 16 17 C -0.35 -20.71 9.95 84.03 0.84 -19.87 16 18 H 0.06 3.45 8.03 -2.91 -0.02 3.43 16 19 C -0.07 -4.37 4.93 84.86 0.42 -3.95 16 20 N -0.93 -58.36 12.90 21.65 0.28 -58.08 16 21 Si 1.11 52.38 30.04 68.60 2.06 54.44 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.15 6.36 5.74 86.73 0.50 6.85 16 26 C 0.04 1.11 5.47 86.38 0.47 1.58 16 27 C 0.11 2.44 6.25 86.35 0.54 2.97 16 28 N -0.27 -4.94 8.72 -48.18 -0.42 -5.36 16 29 N -0.36 -4.11 6.83 -47.93 -0.33 -4.44 16 30 H 0.46 1.68 8.96 -220.00 -1.97 -0.30 16 31 H 0.05 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 34 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.10 2.31 7.04 -2.39 -0.02 2.29 16 39 H 0.10 2.32 6.75 -2.39 -0.02 2.30 16 40 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.09 2.68 7.93 -2.38 -0.02 2.66 16 43 H 0.02 1.25 7.85 -2.39 -0.02 1.24 16 44 H 0.00 0.11 7.07 -2.39 -0.02 0.10 16 45 H 0.25 16.17 6.58 -92.71 -0.61 15.56 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.04 1.62 7.78 -2.39 -0.02 1.60 16 48 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 2.35 6.88 -2.39 -0.02 2.33 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.13 2.87 4.28 -15.10 -0.06 2.81 16 Total: -1.00 -77.82 397.75 -1.08 -78.90 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -0.93 Total: 11.32 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.94 Total: 13.97 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -9.09 Total: -139.73 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.06 Total: 54.44 kcal Total: -77.82 -1.08 -78.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046006255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.341 kcal (2) G-P(sol) polarization free energy of solvation -77.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds