Wall clock time and date at job start Wed Apr 1 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35359 * 126.38458 * 2 1 4 4 C 1.41508 * 105.50099 * 180.15535 * 3 2 1 5 5 C 1.47714 * 126.51667 * 179.90265 * 4 3 2 6 6 O 1.21566 * 119.99967 * 6.15534 * 5 4 3 7 7 N 1.34772 * 119.99838 * 186.15897 * 5 4 3 8 8 C 1.47079 * 120.88027 * 186.12633 * 7 5 4 9 9 C 1.53240 * 108.52030 * 231.20508 * 8 7 5 10 10 N 1.46897 * 109.34292 * 306.17183 * 9 8 7 11 11 C 1.46903 * 111.00056 * 187.25626 * 10 9 8 12 12 H 1.09001 * 110.63519 * 296.05898 * 11 10 9 13 13 C 1.55153 * 110.72210 * 59.20540 * 11 10 9 14 14 C 1.54909 * 101.58031 * 153.86943 * 13 11 10 15 15 N 1.47419 * 104.83039 * 322.98622 * 14 13 11 16 16 C 1.36942 * 125.64670 * 204.09889 * 15 14 13 17 17 H 1.08003 * 119.99920 * 168.08071 * 16 15 14 18 18 C 1.38806 * 120.00152 * 348.06529 * 16 15 14 19 19 N 1.31621 * 120.00107 * 324.68153 * 18 16 15 20 20 Si 1.86805 * 120.00134 * 144.67432 * 18 16 15 21 21 H 1.48507 * 109.46690 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47389 * 240.00948 * 20 18 16 23 23 H 1.48496 * 109.46857 * 120.00179 * 20 18 16 24 24 C 1.47020 * 108.70416 * 24.35971 * 15 14 13 25 25 C 1.46899 * 111.27127 * 63.10563 * 10 9 8 26 26 C 1.47076 * 120.88188 * 6.15234 * 7 5 4 27 27 N 1.31803 * 106.96470 * 359.64132 * 4 3 2 28 28 N 1.28480 * 110.07034 * 0.22425 * 27 4 3 29 29 C 1.46496 * 124.88207 * 180.02562 * 28 27 4 30 30 H 1.09002 * 109.47008 * 270.23742 * 1 2 3 31 31 H 1.08999 * 109.47275 * 30.23550 * 1 2 3 32 32 H 1.09001 * 109.47511 * 150.23707 * 1 2 3 33 33 H 1.08003 * 127.25442 * 0.04920 * 3 2 1 34 34 H 1.09002 * 109.62558 * 111.49748 * 8 7 5 35 35 H 1.08991 * 109.62932 * 350.92129 * 8 7 5 36 36 H 1.09004 * 109.49194 * 186.21057 * 9 8 7 37 37 H 1.08993 * 109.49327 * 66.13657 * 9 8 7 38 38 H 1.08992 * 111.00478 * 35.78836 * 13 11 10 39 39 H 1.09003 * 111.00153 * 271.94116 * 13 11 10 40 40 H 1.09002 * 110.36029 * 204.15391 * 14 13 11 41 41 H 1.08992 * 110.36973 * 81.82944 * 14 13 11 42 42 H 0.96993 * 119.99975 * 354.35105 * 19 18 16 43 43 H 1.08998 * 109.88140 * 118.13151 * 24 15 14 44 44 H 1.09001 * 109.88159 * 239.29342 * 24 15 14 45 45 H 1.08998 * 109.49109 * 56.85312 * 25 10 9 46 46 H 1.08992 * 109.49613 * 176.93488 * 25 10 9 47 47 H 1.09002 * 109.62893 * 248.50461 * 26 7 5 48 48 H 1.09003 * 109.62957 * 9.08170 * 26 7 5 49 49 H 1.09000 * 109.47454 * 90.02520 * 29 28 27 50 50 H 1.08993 * 109.47339 * 210.02554 * 29 28 27 51 51 H 1.09001 * 109.47173 * 330.02473 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0037 5 6 4.8765 1.3811 -0.0072 6 8 4.8249 2.5904 0.1059 7 7 6.0690 0.7665 -0.1357 8 6 7.3249 1.5213 -0.0081 9 6 8.2018 1.2168 -1.2273 10 7 8.3619 -0.2373 -1.3605 11 6 9.3337 -0.5658 -2.4121 12 1 8.9736 -0.2327 -3.3855 13 6 10.7178 0.0594 -2.0952 14 6 11.6725 -0.9016 -2.8466 15 7 11.0727 -2.2377 -2.6778 16 6 11.7451 -3.4287 -2.7458 17 1 11.2642 -4.3396 -2.4211 18 6 13.0446 -3.4653 -3.2322 19 7 13.4053 -2.6584 -4.2075 20 14 14.2818 -4.6598 -2.5026 21 1 13.6311 -5.4509 -1.4273 22 1 15.4267 -3.9024 -1.9365 23 1 14.7706 -5.5760 -3.5641 24 6 9.6321 -2.0799 -2.4306 25 6 7.0724 -0.8946 -1.6114 26 6 6.1491 -0.6766 -0.4079 27 7 3.5420 -0.7296 0.0023 28 7 2.3079 -1.0871 0.0045 29 6 1.8375 -2.4744 0.0115 30 1 -0.3633 0.0043 1.0277 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3634 -0.8921 -0.5101 33 1 2.0057 2.1260 0.0007 34 1 7.8437 1.2177 0.9012 35 1 7.1082 2.5888 0.0298 36 1 9.1799 1.6800 -1.0966 37 1 7.7278 1.6143 -2.1246 38 1 10.9156 0.0478 -1.0234 39 1 10.7896 1.0716 -2.4932 40 1 12.6670 -0.8732 -2.4013 41 1 11.7214 -0.6385 -3.9032 42 1 12.7444 -2.0967 -4.6416 43 1 9.0645 -2.5619 -3.2266 44 1 9.3709 -2.5192 -1.4679 45 1 6.6140 -0.4677 -2.5034 46 1 7.2312 -1.9627 -1.7593 47 1 6.5549 -1.1915 0.4629 48 1 5.1550 -1.0622 -0.6345 49 1 1.7208 -2.8134 1.0409 50 1 0.8781 -2.5354 -0.5020 51 1 2.5637 -3.1069 -0.4991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046012135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:46 Heat of formation + Delta-G solvation = 99.641969 kcal Electronic energy + Delta-G solvation = -31106.922864 eV Core-core repulsion = 27044.689635 eV Total energy + Delta-G solvation = -4062.233229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.06160 -40.08287 -38.54564 -36.71809 -34.47335 -33.86462 -33.05048 -32.06806 -31.32686 -29.26109 -28.30424 -27.82240 -27.39340 -25.87612 -24.14296 -23.71004 -22.93766 -21.46707 -20.70011 -20.06352 -19.74845 -18.92871 -17.46696 -17.25814 -16.91591 -16.78735 -16.03273 -15.46942 -15.31374 -14.81629 -14.75087 -14.55751 -14.13166 -14.04060 -13.76158 -13.72074 -13.50939 -13.33137 -13.20519 -13.04965 -13.00293 -12.80779 -12.78539 -12.30639 -12.12386 -11.79164 -11.61690 -11.33252 -11.23351 -10.80823 -10.66809 -10.42013 -10.38749 -10.24953 -10.12396 -10.02210 -9.98488 -9.60044 -9.44093 -9.24799 -8.78446 -8.27251 -8.13483 -6.90836 -6.12668 -3.02549 1.28599 1.77528 2.05127 2.86959 3.23456 3.55979 3.58920 3.73316 3.88569 4.01730 4.18014 4.39800 4.50786 4.59715 4.65264 4.86440 4.86856 4.95929 4.99350 5.02498 5.13065 5.23060 5.25804 5.28612 5.33526 5.34280 5.44730 5.48788 5.52069 5.60717 5.68223 5.74127 5.76718 5.80723 5.88504 6.02607 6.13359 6.14508 6.34999 6.35571 6.39718 6.55865 6.61301 6.63525 6.99565 7.10013 7.20841 7.23433 7.40214 7.58025 7.85560 8.05516 8.53061 9.05211 9.86780 10.43797 11.22384 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.002213 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.059977 B =12650.254771 C =13739.090011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.011 3.989 3 C -0.179 4.179 4 C -0.009 4.009 5 C 0.603 3.397 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.118 3.882 9 C 0.042 3.958 10 N -0.525 5.525 11 C 0.072 3.928 12 H 0.043 0.957 13 C -0.126 4.126 14 C 0.146 3.854 15 N -0.601 5.601 16 C -0.341 4.341 17 H 0.066 0.934 18 C -0.023 4.023 19 N -0.908 5.908 20 Si 1.059 2.941 21 H -0.292 1.292 22 H -0.290 1.290 23 H -0.296 1.296 24 C 0.148 3.852 25 C 0.041 3.959 26 C 0.096 3.904 27 N -0.259 5.259 28 N -0.284 5.284 29 C 0.083 3.917 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.268 0.732 43 H 0.016 0.984 44 H 0.038 0.962 45 H 0.032 0.968 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.124 0.876 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.594 5.284 9.263 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.168 4.168 5 C 0.390 3.610 6 O -0.415 6.415 7 N -0.331 5.331 8 C -0.004 4.004 9 C -0.087 4.087 10 N -0.251 5.251 11 C -0.036 4.036 12 H 0.061 0.939 13 C -0.164 4.164 14 C 0.020 3.980 15 N -0.328 5.328 16 C -0.468 4.468 17 H 0.084 0.916 18 C -0.225 4.225 19 N -0.548 5.548 20 Si 0.889 3.111 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.224 1.224 24 C 0.022 3.978 25 C -0.088 4.088 26 C -0.027 4.027 27 N -0.094 5.094 28 N -0.072 5.072 29 C -0.058 4.058 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.141 0.859 49 H 0.105 0.895 50 H 0.113 0.887 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.215 4.061 9.737 27.333 hybrid contribution -2.338 1.221 -0.875 2.779 sum -27.553 5.282 8.863 29.421 Atomic orbital electron populations 1.20359 0.86599 1.03894 1.03332 1.21414 0.95452 0.86708 1.07773 1.21494 0.90404 0.99615 1.09163 1.21874 0.95075 0.89684 1.10161 1.16975 0.81482 0.86096 0.76470 1.90768 1.86346 1.13118 1.51280 1.48011 1.05240 1.10245 1.69631 1.21784 0.82813 0.97330 0.98509 1.22456 1.00193 0.89077 0.96936 1.62015 1.08588 1.08177 1.46277 1.22665 0.91935 0.97756 0.91241 0.93940 1.22879 0.94241 0.97797 1.01514 1.21470 0.95692 0.84489 0.96367 1.44537 1.01668 1.01772 1.84824 1.19690 0.98784 0.85783 1.42526 0.91597 1.25632 0.97655 1.02989 0.96256 1.70731 1.39079 1.27263 1.17709 0.83653 0.76131 0.75443 0.75871 1.21808 1.21660 1.22377 1.21237 0.87130 0.91376 0.98077 1.22497 0.89379 1.00600 0.96299 1.22551 1.02445 0.79624 0.98090 1.73443 1.01078 1.14687 1.20226 1.45530 1.02997 1.07610 1.51084 1.22201 1.01715 0.77227 1.04613 0.90273 0.89527 0.91129 0.82096 0.90398 0.88701 0.89061 0.94709 0.90580 0.92279 0.92883 0.96124 0.92141 0.96633 0.94434 0.94971 0.89123 0.90698 0.85862 0.89537 0.88666 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.10 36.01 0.36 0.06 16 2 C 0.01 0.08 6.92 -82.21 -0.57 -0.48 16 3 C -0.18 -1.88 10.73 -39.36 -0.42 -2.31 16 4 C -0.01 -0.11 6.83 -82.76 -0.57 -0.68 16 5 C 0.60 8.78 7.70 -12.39 -0.10 8.68 16 6 O -0.54 -9.07 16.39 5.31 0.09 -8.99 16 7 N -0.60 -8.10 3.01 -173.63 -0.52 -8.62 16 8 C 0.12 1.51 6.61 -3.60 -0.02 1.49 16 9 C 0.04 0.57 5.46 -3.70 -0.02 0.55 16 10 N -0.53 -8.03 4.45 -224.15 -1.00 -9.03 16 11 C 0.07 1.29 2.64 -65.87 -0.17 1.12 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.13 -2.33 5.31 -24.58 -0.13 -2.46 16 14 C 0.15 3.47 5.37 -2.53 -0.01 3.45 16 15 N -0.60 -15.66 3.33 -170.08 -0.57 -16.22 16 16 C -0.34 -9.84 9.95 -15.06 -0.15 -9.99 16 17 H 0.07 1.91 8.03 -52.48 -0.42 1.49 16 18 C -0.02 -0.67 4.93 -17.43 -0.09 -0.76 16 19 N -0.91 -27.80 12.90 55.49 0.72 -27.08 16 20 Si 1.06 25.84 30.04 -169.99 -5.11 20.73 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.15 3.19 5.74 -3.06 -0.02 3.17 16 25 C 0.04 0.57 5.47 -3.70 -0.02 0.55 16 26 C 0.10 1.21 6.25 -3.60 -0.02 1.19 16 27 N -0.26 -2.89 8.47 33.42 0.28 -2.60 16 28 N -0.28 -2.35 3.70 -63.86 -0.24 -2.58 16 29 C 0.08 0.30 11.11 59.84 0.66 0.97 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.14 7.00 -51.93 -0.36 -0.22 16 33 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.21 7.04 -51.93 -0.37 0.85 16 36 H 0.09 1.17 6.75 -51.93 -0.35 0.82 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 40 H 0.05 1.37 7.85 -51.93 -0.41 0.97 16 41 H 0.02 0.52 7.07 -51.93 -0.37 0.16 16 42 H 0.27 8.26 6.58 -40.82 -0.27 7.99 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.04 0.82 7.78 -51.93 -0.40 0.42 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.27 6.88 -51.93 -0.36 0.91 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.12 1.49 4.28 -61.80 -0.26 1.22 16 49 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.09 0.11 6.95 -51.93 -0.36 -0.25 16 51 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -35.99 396.46 -9.86 -45.85 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.21 Total: -1.98 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.28 Total: 4.55 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.32 Total: -66.14 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.11 Total: 20.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.99 -9.86 -45.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.494 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds