Wall clock time and date at job start Wed Apr 1 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39670 * 126.06713 * 2 1 4 4 C 1.38406 * 105.35780 * 180.14254 * 3 2 1 5 5 C 1.47157 * 126.88708 * 179.91391 * 4 3 2 6 6 O 1.21629 * 120.00333 * 198.29976 * 5 4 3 7 7 N 1.34782 * 119.99763 * 18.30001 * 5 4 3 8 8 C 1.47081 * 120.88088 * 186.17819 * 7 5 4 9 9 C 1.53239 * 108.52158 * 231.20818 * 8 7 5 10 10 N 1.46902 * 109.33936 * 306.17261 * 9 8 7 11 11 C 1.46900 * 110.99727 * 187.25269 * 10 9 8 12 12 H 1.09000 * 110.64690 * 297.67071 * 11 10 9 13 13 C 1.55164 * 110.71981 * 60.81353 * 11 10 9 14 14 C 1.54907 * 101.58011 * 153.86338 * 13 11 10 15 15 N 1.47429 * 104.83504 * 322.98862 * 14 13 11 16 16 C 1.36939 * 125.65296 * 204.09166 * 15 14 13 17 17 H 1.07998 * 119.99837 * 163.06672 * 16 15 14 18 18 C 1.38816 * 119.99677 * 343.06848 * 16 15 14 19 19 N 1.31618 * 119.99787 * 355.07738 * 18 16 15 20 20 Si 1.86797 * 119.99895 * 175.08408 * 18 16 15 21 21 H 1.48498 * 109.47444 * 84.98115 * 20 18 16 22 22 H 1.48499 * 109.46775 * 324.98313 * 20 18 16 23 23 H 1.48502 * 109.46981 * 204.98716 * 20 18 16 24 24 C 1.47029 * 108.70022 * 24.35829 * 15 14 13 25 25 C 1.46895 * 111.27015 * 63.10231 * 10 9 8 26 26 C 1.47077 * 120.88006 * 6.20256 * 7 5 4 27 27 N 1.36602 * 106.22998 * 359.65529 * 4 3 2 28 28 C 1.46500 * 125.18773 * 180.20513 * 27 4 3 29 29 N 1.28439 * 109.62179 * 0.22058 * 27 4 3 30 30 H 1.08998 * 109.47463 * 270.27236 * 1 2 3 31 31 H 1.09005 * 109.46918 * 30.27397 * 1 2 3 32 32 H 1.09003 * 109.47352 * 150.26782 * 1 2 3 33 33 H 1.07993 * 127.32318 * 0.05740 * 3 2 1 34 34 H 1.08999 * 109.62881 * 111.49962 * 8 7 5 35 35 H 1.09000 * 109.63166 * 350.91676 * 8 7 5 36 36 H 1.08995 * 109.49142 * 186.21040 * 9 8 7 37 37 H 1.09003 * 109.51667 * 66.14123 * 9 8 7 38 38 H 1.08994 * 111.00256 * 35.79420 * 13 11 10 39 39 H 1.08991 * 111.00306 * 271.93672 * 13 11 10 40 40 H 1.09004 * 110.37042 * 204.15349 * 14 13 11 41 41 H 1.09001 * 110.37035 * 81.82908 * 14 13 11 42 42 H 0.97005 * 119.99529 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.87931 * 118.13095 * 24 15 14 44 44 H 1.08998 * 109.87713 * 239.29365 * 24 15 14 45 45 H 1.08999 * 109.48829 * 56.85756 * 25 10 9 46 46 H 1.09007 * 109.49266 * 176.93195 * 25 10 9 47 47 H 1.09001 * 109.63079 * 248.50031 * 26 7 5 48 48 H 1.09001 * 109.63194 * 9.08406 * 26 7 5 49 49 H 1.09003 * 109.47236 * 83.92402 * 28 27 4 50 50 H 1.09002 * 109.46872 * 203.91979 * 28 27 4 51 51 H 1.08997 * 109.47481 * 323.92311 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 -0.0033 5 6 4.8664 1.4281 -0.0064 6 8 5.9149 0.9098 -0.3399 7 7 4.8423 2.7249 0.3602 8 6 6.0421 3.5667 0.2365 9 6 6.2884 4.2634 1.5790 10 7 5.0701 4.9746 1.9888 11 6 5.3159 5.7953 3.1821 12 1 5.6017 5.1690 4.0271 13 6 6.4040 6.8644 2.8984 14 6 6.0314 7.9664 3.9213 15 7 4.5575 7.9674 3.9549 16 6 3.7683 9.0230 4.3267 17 1 2.7203 9.0318 4.0659 18 6 4.3154 10.0815 5.0389 19 7 5.5676 10.0270 5.4406 20 14 3.2744 11.5832 5.4271 21 1 2.4944 11.3379 6.6667 22 1 2.3434 11.8448 4.3001 23 1 4.1578 12.7607 5.6228 24 6 4.0753 6.6453 3.5291 25 6 3.9578 4.0413 2.2116 26 6 3.6159 3.3355 0.8951 27 7 3.5173 -0.7223 0.0028 28 6 4.6450 -1.6574 0.0063 29 7 2.2775 -1.0578 0.0047 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8924 -0.5097 33 1 2.0206 2.1639 0.0009 34 1 5.8860 4.3146 -0.5409 35 1 6.9010 2.9452 -0.0165 36 1 7.1073 4.9751 1.4745 37 1 6.5466 3.5199 2.3331 38 1 6.3282 7.2376 1.8772 39 1 7.4006 6.4694 3.0954 40 1 6.4038 8.9351 3.5880 41 1 6.4330 7.7226 4.9049 42 1 5.9497 10.7666 5.9386 43 1 3.5167 6.1761 4.3389 44 1 3.4406 6.7481 2.6490 45 1 4.2482 3.3007 2.9567 46 1 3.0864 4.5920 2.5661 47 1 3.2266 4.0612 0.1810 48 1 2.8708 2.5612 1.0776 49 1 4.9947 -1.8011 1.0287 50 1 4.3248 -2.6143 -0.4060 51 1 5.4545 -1.2527 -0.6011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046012170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:07 Heat of formation + Delta-G solvation = 105.594099 kcal Electronic energy + Delta-G solvation = -31255.467091 eV Core-core repulsion = 27193.491966 eV Total energy + Delta-G solvation = -4061.975125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.91838 -40.23315 -38.57650 -36.76417 -34.71015 -34.07177 -32.35709 -31.88881 -30.64634 -29.97770 -29.19440 -28.10854 -26.34736 -25.76673 -24.30039 -23.88122 -23.15642 -21.66175 -20.69484 -20.05189 -19.59797 -19.02048 -17.48358 -17.03119 -16.78646 -16.60592 -16.05788 -15.49838 -15.38462 -14.92182 -14.70810 -14.61265 -14.24169 -14.14498 -14.00885 -13.79951 -13.46335 -13.23129 -13.06933 -12.75198 -12.73592 -12.55069 -12.41461 -12.22843 -11.99486 -11.66724 -11.60802 -11.36587 -11.26346 -10.88251 -10.84505 -10.81198 -10.35724 -10.20494 -10.16489 -10.05971 -9.87165 -9.73478 -9.40118 -9.12489 -8.95696 -8.58576 -8.18857 -6.73694 -5.75864 -3.11428 0.96146 2.00953 2.23251 2.75968 2.84903 3.39351 3.44557 3.46320 3.88983 4.02816 4.14529 4.50124 4.65672 4.73043 4.81550 4.81906 4.88642 5.00656 5.03116 5.09854 5.19875 5.21706 5.25685 5.33258 5.36817 5.42291 5.47989 5.49273 5.53767 5.58719 5.65851 5.69564 5.76378 5.82024 5.85666 5.95136 6.14919 6.22288 6.30614 6.42759 6.50377 6.55353 6.62576 6.67297 7.02278 7.15346 7.36622 7.46763 7.61455 7.69106 7.77445 7.81928 8.27869 9.19238 9.80759 10.50732 11.37694 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002263 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.658383 B =12368.629975 C =13568.747673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.024 3.976 3 C -0.198 4.198 4 C -0.031 4.031 5 C 0.592 3.408 6 O -0.546 6.546 7 N -0.592 5.592 8 C 0.120 3.880 9 C 0.042 3.958 10 N -0.525 5.525 11 C 0.072 3.928 12 H 0.043 0.957 13 C -0.136 4.136 14 C 0.176 3.824 15 N -0.600 5.600 16 C -0.230 4.230 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.146 3.854 25 C 0.039 3.961 26 C 0.081 3.919 27 N -0.258 5.258 28 C 0.084 3.916 29 N -0.279 5.279 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.176 0.824 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.028 0.972 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -21.027 -11.996 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C -0.227 4.227 4 C -0.160 4.160 5 C 0.379 3.621 6 O -0.425 6.425 7 N -0.325 5.325 8 C -0.002 4.002 9 C -0.087 4.087 10 N -0.251 5.251 11 C -0.036 4.036 12 H 0.061 0.939 13 C -0.175 4.175 14 C 0.051 3.949 15 N -0.327 5.327 16 C -0.358 4.358 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.741 3.259 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.020 3.980 25 C -0.090 4.090 26 C -0.041 4.041 27 N -0.045 5.045 28 C -0.056 4.056 29 N -0.113 5.113 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.193 0.807 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.114 0.886 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.080 -22.053 -12.431 25.502 hybrid contribution -0.151 1.121 1.101 1.579 sum -3.232 -20.932 -11.330 24.020 Atomic orbital electron populations 1.20112 0.86212 1.03314 1.02980 1.22086 0.97234 0.88766 1.05180 1.22571 0.90279 1.00728 1.09086 1.21350 0.95778 0.85313 1.13553 1.16918 0.86181 0.81462 0.77533 1.90764 1.31657 1.70274 1.49815 1.47843 1.13618 1.08844 1.62155 1.21836 0.87319 0.93159 0.97912 1.22451 0.93758 0.96934 0.95529 1.62035 1.05154 1.22393 1.35474 1.22678 0.98261 0.93548 0.89093 0.93903 1.23080 0.95748 0.97058 1.01612 1.21324 0.84182 0.95379 0.94031 1.44364 1.01934 1.07621 1.78751 1.18959 0.92627 0.96029 1.28205 0.90870 1.24941 0.96775 0.99583 0.98886 1.69934 1.12733 1.31963 1.41760 0.86164 0.79166 0.82306 0.78256 1.21462 1.20629 1.21628 1.21251 0.93267 0.86895 0.96572 1.22497 0.96310 0.94605 0.95563 1.22853 0.86871 0.98476 0.95875 1.45527 1.05154 1.04229 1.49606 1.22353 0.85769 0.92646 1.04839 1.73143 0.89419 1.27947 1.20746 0.90633 0.90325 0.91013 0.80670 0.90085 0.88629 0.88848 0.94708 0.91101 0.92665 0.91951 0.95369 0.93667 0.96532 0.94775 0.94709 0.88640 0.89745 0.86872 0.89882 0.88598 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16 2 C 0.02 0.23 7.22 -82.47 -0.60 -0.36 16 3 C -0.20 -1.91 8.68 -38.99 -0.34 -2.24 16 4 C -0.03 -0.36 6.66 -82.06 -0.55 -0.90 16 5 C 0.59 7.28 7.62 -12.64 -0.10 7.19 16 6 O -0.55 -7.77 14.39 5.25 0.08 -7.70 16 7 N -0.59 -6.61 3.01 -173.83 -0.52 -7.13 16 8 C 0.12 1.31 6.61 -3.60 -0.02 1.29 16 9 C 0.04 0.51 5.47 -3.70 -0.02 0.49 16 10 N -0.53 -7.24 4.46 -224.14 -1.00 -8.24 16 11 C 0.07 1.23 2.64 -65.87 -0.17 1.05 16 12 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 13 C -0.14 -2.47 5.39 -24.58 -0.13 -2.60 16 14 C 0.18 4.19 5.36 -2.53 -0.01 4.18 16 15 N -0.60 -15.21 3.39 -170.06 -0.58 -15.79 16 16 C -0.23 -6.36 10.22 -15.06 -0.15 -6.52 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C 0.00 -0.13 5.43 -17.43 -0.09 -0.23 16 19 N -0.92 -26.80 10.81 55.49 0.60 -26.20 16 20 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.15 2.98 5.72 -3.05 -0.02 2.97 16 25 C 0.04 0.46 5.44 -3.70 -0.02 0.44 16 26 C 0.08 0.79 5.33 -3.60 -0.02 0.77 16 27 N -0.26 -2.88 3.75 -63.88 -0.24 -3.12 16 28 C 0.08 0.69 10.87 59.85 0.65 1.34 16 29 N -0.28 -3.20 11.90 33.64 0.40 -2.80 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.18 1.27 5.62 -52.49 -0.29 0.98 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.06 7.04 -51.93 -0.37 0.69 16 36 H 0.09 1.10 6.80 -51.93 -0.35 0.74 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 40 H 0.06 1.64 7.27 -51.93 -0.38 1.27 16 41 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 1.14 6.77 -51.92 -0.35 0.78 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.11 0.96 3.69 -51.93 -0.19 0.77 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.11 0.97 6.43 -51.93 -0.33 0.63 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -33.40 392.72 -9.70 -43.09 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.11 Total: -1.68 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.22 Total: 6.80 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -1.34 Total: -63.27 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.40 -9.70 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.689 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds