Wall clock time and date at job start Wed Apr 1 2020 04:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39670 * 126.06713 * 2 1 4 4 C 1.38406 * 105.35780 * 180.14254 * 3 2 1 5 5 C 1.47157 * 126.88708 * 179.91391 * 4 3 2 6 6 O 1.21629 * 120.00333 * 198.29976 * 5 4 3 7 7 N 1.34782 * 119.99763 * 18.30001 * 5 4 3 8 8 C 1.47081 * 120.88088 * 186.17819 * 7 5 4 9 9 C 1.53239 * 108.52158 * 231.20818 * 8 7 5 10 10 N 1.46902 * 109.33936 * 306.17261 * 9 8 7 11 11 C 1.46900 * 110.99727 * 187.25269 * 10 9 8 12 12 H 1.09000 * 110.64690 * 297.67071 * 11 10 9 13 13 C 1.55164 * 110.71981 * 60.81353 * 11 10 9 14 14 C 1.54907 * 101.58011 * 153.86338 * 13 11 10 15 15 N 1.47429 * 104.83504 * 322.98862 * 14 13 11 16 16 C 1.36939 * 125.65296 * 204.09166 * 15 14 13 17 17 H 1.07998 * 119.99837 * 163.06672 * 16 15 14 18 18 C 1.38816 * 119.99677 * 343.06848 * 16 15 14 19 19 N 1.31618 * 119.99787 * 355.07738 * 18 16 15 20 20 Si 1.86797 * 119.99895 * 175.08408 * 18 16 15 21 21 H 1.48498 * 109.47444 * 84.98115 * 20 18 16 22 22 H 1.48499 * 109.46775 * 324.98313 * 20 18 16 23 23 H 1.48502 * 109.46981 * 204.98716 * 20 18 16 24 24 C 1.47029 * 108.70022 * 24.35829 * 15 14 13 25 25 C 1.46895 * 111.27015 * 63.10231 * 10 9 8 26 26 C 1.47077 * 120.88006 * 6.20256 * 7 5 4 27 27 N 1.36602 * 106.22998 * 359.65529 * 4 3 2 28 28 C 1.46500 * 125.18773 * 180.20513 * 27 4 3 29 29 N 1.28439 * 109.62179 * 0.22058 * 27 4 3 30 30 H 1.08998 * 109.47463 * 270.27236 * 1 2 3 31 31 H 1.09005 * 109.46918 * 30.27397 * 1 2 3 32 32 H 1.09003 * 109.47352 * 150.26782 * 1 2 3 33 33 H 1.07993 * 127.32318 * 0.05740 * 3 2 1 34 34 H 1.08999 * 109.62881 * 111.49962 * 8 7 5 35 35 H 1.09000 * 109.63166 * 350.91676 * 8 7 5 36 36 H 1.08995 * 109.49142 * 186.21040 * 9 8 7 37 37 H 1.09003 * 109.51667 * 66.14123 * 9 8 7 38 38 H 1.08994 * 111.00256 * 35.79420 * 13 11 10 39 39 H 1.08991 * 111.00306 * 271.93672 * 13 11 10 40 40 H 1.09004 * 110.37042 * 204.15349 * 14 13 11 41 41 H 1.09001 * 110.37035 * 81.82908 * 14 13 11 42 42 H 0.97005 * 119.99529 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.87931 * 118.13095 * 24 15 14 44 44 H 1.08998 * 109.87713 * 239.29365 * 24 15 14 45 45 H 1.08999 * 109.48829 * 56.85756 * 25 10 9 46 46 H 1.09007 * 109.49266 * 176.93195 * 25 10 9 47 47 H 1.09001 * 109.63079 * 248.50031 * 26 7 5 48 48 H 1.09001 * 109.63194 * 9.08406 * 26 7 5 49 49 H 1.09003 * 109.47236 * 83.92402 * 28 27 4 50 50 H 1.09002 * 109.46872 * 203.91979 * 28 27 4 51 51 H 1.08997 * 109.47481 * 323.92311 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6239 0.6396 -0.0033 5 6 4.8664 1.4281 -0.0064 6 8 5.9149 0.9098 -0.3399 7 7 4.8423 2.7249 0.3602 8 6 6.0421 3.5667 0.2365 9 6 6.2884 4.2634 1.5790 10 7 5.0701 4.9746 1.9888 11 6 5.3159 5.7953 3.1821 12 1 5.6017 5.1690 4.0271 13 6 6.4040 6.8644 2.8984 14 6 6.0314 7.9664 3.9213 15 7 4.5575 7.9674 3.9549 16 6 3.7683 9.0230 4.3267 17 1 2.7203 9.0318 4.0659 18 6 4.3154 10.0815 5.0389 19 7 5.5676 10.0270 5.4406 20 14 3.2744 11.5832 5.4271 21 1 2.4944 11.3379 6.6667 22 1 2.3434 11.8448 4.3001 23 1 4.1578 12.7607 5.6228 24 6 4.0753 6.6453 3.5291 25 6 3.9578 4.0413 2.2116 26 6 3.6159 3.3355 0.8951 27 7 3.5173 -0.7223 0.0028 28 6 4.6450 -1.6574 0.0063 29 7 2.2775 -1.0578 0.0047 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8924 -0.5097 33 1 2.0206 2.1639 0.0009 34 1 5.8860 4.3146 -0.5409 35 1 6.9010 2.9452 -0.0165 36 1 7.1073 4.9751 1.4745 37 1 6.5466 3.5199 2.3331 38 1 6.3282 7.2376 1.8772 39 1 7.4006 6.4694 3.0954 40 1 6.4038 8.9351 3.5880 41 1 6.4330 7.7226 4.9049 42 1 5.9497 10.7666 5.9386 43 1 3.5167 6.1761 4.3389 44 1 3.4406 6.7481 2.6490 45 1 4.2482 3.3007 2.9567 46 1 3.0864 4.5920 2.5661 47 1 3.2266 4.0612 0.1810 48 1 2.8708 2.5612 1.0776 49 1 4.9947 -1.8011 1.0287 50 1 4.3248 -2.6143 -0.4060 51 1 5.4545 -1.2527 -0.6011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046012170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:05 Heat of formation + Delta-G solvation = 83.311761 kcal Electronic energy + Delta-G solvation = -31256.433326 eV Core-core repulsion = 27193.491966 eV Total energy + Delta-G solvation = -4062.941360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.67567 -41.19335 -39.82907 -38.10863 -35.87360 -34.91683 -33.93045 -33.00963 -31.66039 -30.80723 -30.56351 -29.49135 -27.69428 -26.55120 -25.89992 -24.91193 -24.16572 -22.48448 -21.93556 -21.60193 -20.92127 -19.84392 -18.85688 -18.36298 -17.77379 -17.43240 -17.07630 -16.75276 -16.60078 -16.23649 -15.98863 -15.88254 -15.34337 -15.10982 -15.03088 -14.75190 -14.35715 -14.27910 -14.21039 -14.07418 -13.55683 -13.44210 -13.40381 -13.27434 -13.13108 -13.07437 -12.77937 -12.71268 -12.57411 -12.48479 -12.28329 -11.99140 -11.81781 -11.80564 -11.59519 -11.57395 -11.43982 -11.18261 -10.66849 -10.23369 -9.89443 -9.81288 -9.29645 -8.77901 -7.87307 -5.25093 0.14282 1.26112 1.48122 1.49931 1.50560 1.58577 1.95945 1.98138 2.49981 2.79515 3.20308 3.34441 3.48686 3.70261 3.74435 3.86054 3.95342 4.03437 4.10356 4.22022 4.23249 4.24924 4.29761 4.33248 4.38094 4.39649 4.52164 4.57311 4.58953 4.66344 4.73250 4.77186 4.86631 4.91729 4.92630 5.00391 5.02240 5.03669 5.09969 5.13987 5.15450 5.32316 5.46506 5.53879 5.61863 5.73017 5.73223 6.01352 6.08545 6.20253 6.24957 6.82668 7.03416 7.10221 7.77831 8.46336 9.25245 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002263 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.658383 B =12368.629975 C =13568.747673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.016 3.984 3 C -0.191 4.191 4 C -0.052 4.052 5 C 0.591 3.409 6 O -0.572 6.572 7 N -0.592 5.592 8 C 0.124 3.876 9 C 0.045 3.955 10 N -0.525 5.525 11 C 0.090 3.910 12 H 0.041 0.959 13 C -0.117 4.117 14 C 0.181 3.819 15 N -0.624 5.624 16 C -0.243 4.243 17 H 0.078 0.922 18 C -0.063 4.063 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.284 1.284 22 H -0.268 1.268 23 H -0.295 1.295 24 C 0.146 3.854 25 C 0.038 3.962 26 C 0.088 3.912 27 N -0.268 5.268 28 C 0.081 3.919 29 N -0.300 5.300 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.200 0.800 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.027 0.973 41 H -0.003 1.003 42 H 0.248 0.752 43 H 0.014 0.986 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.129 0.871 49 H 0.090 0.910 50 H 0.113 0.887 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -21.736 -13.158 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.140 4.140 3 C -0.220 4.220 4 C -0.181 4.181 5 C 0.379 3.621 6 O -0.453 6.453 7 N -0.323 5.323 8 C 0.002 3.998 9 C -0.083 4.083 10 N -0.251 5.251 11 C -0.019 4.019 12 H 0.058 0.942 13 C -0.155 4.155 14 C 0.055 3.945 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.806 3.194 21 H -0.210 1.210 22 H -0.193 1.193 23 H -0.221 1.221 24 C 0.021 3.979 25 C -0.090 4.090 26 C -0.033 4.033 27 N -0.055 5.055 28 C -0.059 4.059 29 N -0.134 5.134 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.216 0.784 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.015 0.985 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.146 0.854 49 H 0.108 0.892 50 H 0.131 0.869 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.695 -22.791 -13.611 26.958 hybrid contribution 0.308 1.280 1.453 1.961 sum -4.386 -21.511 -12.158 25.095 Atomic orbital electron populations 1.20250 0.84003 1.04369 1.03915 1.22689 0.98680 0.88430 1.04183 1.22887 0.89428 1.01802 1.07838 1.21430 0.96023 0.85693 1.14932 1.17066 0.86188 0.81677 0.77157 1.90748 1.32634 1.70812 1.51079 1.47909 1.14089 1.08579 1.61751 1.21798 0.87444 0.93158 0.97355 1.22472 0.93112 0.96814 0.95900 1.61996 1.06422 1.23226 1.33406 1.22357 0.95861 0.93274 0.90404 0.94152 1.22869 0.97452 0.95355 0.99860 1.21118 0.83717 0.95615 0.94045 1.44692 1.02529 1.09151 1.78641 1.19356 0.93183 0.96979 1.27747 0.90393 1.25780 0.97978 1.02561 0.99303 1.70136 1.14331 1.32516 1.42682 0.85115 0.77589 0.78451 0.78269 1.21025 1.19321 1.22090 1.21349 0.94805 0.85290 0.96438 1.22568 0.95512 0.94169 0.96772 1.22923 0.86562 0.98894 0.94928 1.45780 1.05506 1.04527 1.49718 1.22464 0.85115 0.92991 1.05282 1.73139 0.89785 1.28957 1.21535 0.89672 0.88381 0.90879 0.78362 0.89102 0.88741 0.88270 0.95213 0.90566 0.90137 0.95450 0.98466 0.94284 0.96773 0.93990 0.95187 0.88520 0.88308 0.85368 0.89168 0.86884 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.45 71.24 0.74 0.05 16 2 C 0.02 0.29 7.22 43.05 0.31 0.60 16 3 C -0.19 -3.21 8.68 22.66 0.20 -3.01 16 4 C -0.05 -1.11 6.66 40.78 0.27 -0.84 16 5 C 0.59 13.72 7.62 86.58 0.66 14.38 16 6 O -0.57 -15.90 14.39 -4.12 -0.06 -15.96 16 7 N -0.59 -11.90 3.01 -822.12 -2.47 -14.37 16 8 C 0.12 2.46 6.61 86.35 0.57 3.03 16 9 C 0.05 0.99 5.47 86.38 0.47 1.47 16 10 N -0.53 -13.25 4.46 -863.04 -3.85 -17.09 16 11 C 0.09 2.91 2.64 46.11 0.12 3.03 16 12 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 13 C -0.12 -4.10 5.39 31.99 0.17 -3.93 16 14 C 0.18 8.79 5.36 86.85 0.47 9.26 16 15 N -0.62 -31.86 3.39 -691.94 -2.35 -34.21 16 16 C -0.24 -13.58 10.22 84.03 0.86 -12.72 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.06 -3.55 5.43 84.86 0.46 -3.09 16 19 N -0.95 -57.01 10.81 21.65 0.23 -56.78 16 20 Si 0.98 45.28 29.56 68.60 2.03 47.31 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 C 0.15 5.84 5.72 86.73 0.50 6.33 16 25 C 0.04 0.81 5.44 86.38 0.47 1.28 16 26 C 0.09 1.46 5.33 86.35 0.46 1.92 16 27 N -0.27 -5.71 3.75 -356.02 -1.33 -7.05 16 28 C 0.08 1.28 10.87 127.77 1.39 2.67 16 29 N -0.30 -6.49 11.90 -47.49 -0.57 -7.06 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.20 2.17 5.62 -2.91 -0.02 2.16 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.94 7.04 -2.39 -0.02 1.92 16 36 H 0.10 2.07 6.80 -2.39 -0.02 2.05 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.08 2.43 7.93 -2.39 -0.02 2.42 16 40 H 0.03 1.49 7.27 -2.38 -0.02 1.47 16 41 H 0.00 -0.14 7.95 -2.39 -0.02 -0.16 16 42 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.04 1.62 7.68 -2.39 -0.02 1.60 16 45 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.10 2.05 6.77 -2.38 -0.02 2.04 16 47 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.13 1.76 3.69 -2.39 -0.01 1.75 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.10 1.79 6.43 -2.39 -0.02 1.77 16 Total: -1.00 -73.35 392.72 0.69 -72.66 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.93 Total: 12.11 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 8.12 Total: 20.44 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -10.33 Total: -136.56 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.06 Total: -15.96 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.35 0.69 -72.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.977 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds