Wall clock time and date at job start Wed Apr 1 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39675 * 126.07041 * 2 1 4 4 C 1.38409 * 105.35907 * 180.11389 * 3 2 1 5 5 C 1.47156 * 126.88678 * 179.91874 * 4 3 2 6 6 O 1.21629 * 120.00330 * 198.24571 * 5 4 3 7 7 N 1.34781 * 119.99934 * 18.24241 * 5 4 3 8 8 C 1.47080 * 120.88507 * 186.26243 * 7 5 4 9 9 C 1.53231 * 108.52147 * 231.20805 * 8 7 5 10 10 N 1.46899 * 109.34200 * 306.16662 * 9 8 7 11 11 C 1.46894 * 111.00244 * 187.25509 * 10 9 8 12 12 H 1.08995 * 110.88721 * 303.87780 * 11 10 9 13 13 C 1.55164 * 111.00430 * 179.97438 * 11 10 9 14 14 C 1.54322 * 102.94413 * 206.42324 * 13 11 10 15 15 N 1.47022 * 107.26996 * 22.19375 * 14 13 11 16 16 C 1.36941 * 125.65008 * 181.02461 * 15 14 13 17 17 H 1.07994 * 120.00257 * 171.42692 * 16 15 14 18 18 C 1.38816 * 119.99666 * 351.42448 * 16 15 14 19 19 N 1.31626 * 119.99485 * 151.32468 * 18 16 15 20 20 Si 1.86797 * 120.00180 * 331.32805 * 18 16 15 21 21 H 1.48501 * 109.47051 * 84.60464 * 20 18 16 22 22 H 1.48498 * 109.46957 * 324.60403 * 20 18 16 23 23 H 1.48496 * 109.47250 * 204.60283 * 20 18 16 24 24 C 1.47421 * 108.70451 * 1.28345 * 15 14 13 25 25 C 1.46899 * 111.26961 * 63.10331 * 10 9 8 26 26 C 1.47081 * 120.88138 * 6.28387 * 7 5 4 27 27 N 1.36602 * 106.22752 * 359.65506 * 4 3 2 28 28 C 1.46501 * 125.18508 * 180.20903 * 27 4 3 29 29 N 1.28436 * 109.62260 * 0.22504 * 27 4 3 30 30 H 1.08999 * 109.47011 * 270.26460 * 1 2 3 31 31 H 1.09002 * 109.47087 * 30.25820 * 1 2 3 32 32 H 1.08998 * 109.47553 * 150.26043 * 1 2 3 33 33 H 1.07993 * 127.32123 * 0.02782 * 3 2 1 34 34 H 1.08994 * 109.62920 * 111.49082 * 8 7 5 35 35 H 1.09001 * 109.62583 * 350.91620 * 8 7 5 36 36 H 1.09001 * 109.49442 * 186.20864 * 9 8 7 37 37 H 1.09000 * 109.52078 * 66.13912 * 9 8 7 38 38 H 1.08998 * 110.71769 * 88.06249 * 13 11 10 39 39 H 1.08996 * 110.86976 * 324.85920 * 13 11 10 40 40 H 1.09002 * 109.88420 * 262.77745 * 14 13 11 41 41 H 1.09004 * 110.01356 * 141.68291 * 14 13 11 42 42 H 0.97000 * 119.99949 * 5.02289 * 19 18 16 43 43 H 1.09007 * 110.36661 * 94.48256 * 24 15 14 44 44 H 1.08993 * 110.37160 * 216.80291 * 24 15 14 45 45 H 1.09001 * 109.49250 * 56.86036 * 25 10 9 46 46 H 1.08999 * 109.49673 * 176.93993 * 25 10 9 47 47 H 1.09000 * 109.63007 * 248.50960 * 26 7 5 48 48 H 1.09005 * 109.62872 * 8.88711 * 26 7 5 49 49 H 1.08997 * 109.47720 * 93.87712 * 28 27 4 50 50 H 1.09009 * 109.46828 * 213.87597 * 28 27 4 51 51 H 1.09003 * 109.47302 * 333.87185 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 -0.0027 5 6 4.8664 1.4280 -0.0054 6 8 5.9153 0.9093 -0.3373 7 7 4.8421 2.7252 0.3598 8 6 6.0414 3.5674 0.2347 9 6 6.2881 4.2655 1.5762 10 7 5.0697 4.9768 1.9858 11 6 5.3157 5.7989 3.1780 12 1 5.7069 5.1921 3.9945 13 6 4.0290 6.5507 3.6103 14 6 4.5828 7.7910 4.3426 15 7 5.9560 8.0043 3.8626 16 6 6.8035 8.9947 4.2824 17 1 7.8383 8.9868 3.9736 18 6 6.3323 10.0088 5.1049 19 7 7.1488 10.6056 5.9474 20 14 4.5396 10.5264 5.0163 21 1 3.7232 9.6323 5.8762 22 1 4.0657 10.4309 3.6122 23 1 4.4049 11.9272 5.4901 24 6 6.2674 6.9792 2.8500 25 6 3.9578 4.0434 2.2102 26 6 3.6157 3.3360 0.8946 27 7 3.5172 -0.7223 0.0038 28 6 4.6449 -1.6575 0.0081 29 7 2.2774 -1.0578 0.0052 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3634 -0.8923 -0.5098 33 1 2.0207 2.1639 0.0004 34 1 5.8848 4.3142 -0.5435 35 1 6.9005 2.9458 -0.0180 36 1 7.1067 4.9775 1.4707 37 1 6.5468 3.5231 2.3311 38 1 3.4330 5.9378 4.2865 39 1 3.4415 6.8463 2.7411 40 1 4.5893 7.6144 5.4182 41 1 3.9706 8.6635 4.1141 42 1 8.0941 10.3883 5.9428 43 1 6.0693 7.3623 1.8489 44 1 7.3069 6.6632 2.9371 45 1 4.2487 3.3036 2.9559 46 1 3.0864 4.5942 2.5643 47 1 3.2258 4.0607 0.1798 48 1 2.8696 2.5620 1.0749 49 1 4.8804 -1.9381 1.0347 50 1 4.3798 -2.5490 -0.5605 51 1 5.5135 -1.1814 -0.4468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046012171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:12 Heat of formation + Delta-G solvation = 112.418737 kcal Electronic energy + Delta-G solvation = -31310.867614 eV Core-core repulsion = 27249.188427 eV Total energy + Delta-G solvation = -4061.679187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.98708 -40.33062 -38.75917 -37.04160 -34.85888 -34.15768 -32.55281 -32.02421 -30.73726 -30.04031 -29.58247 -28.48170 -26.68536 -25.78060 -24.40785 -23.55082 -23.16676 -21.76716 -20.78595 -20.47476 -19.82192 -19.12296 -17.61461 -17.39154 -17.02234 -16.70295 -16.14897 -15.75355 -15.53553 -15.24374 -15.03626 -14.57640 -14.36375 -14.30020 -13.94537 -13.86027 -13.55935 -13.40366 -13.24914 -12.82964 -12.81666 -12.69360 -12.60634 -12.50378 -12.29604 -12.23008 -11.74856 -11.51456 -11.28641 -11.05873 -11.03633 -10.86353 -10.61830 -10.40280 -10.28747 -10.22214 -9.58165 -9.47399 -9.20049 -9.18347 -9.04560 -8.40948 -8.32665 -7.10132 -6.34069 -3.16205 0.89094 1.94371 2.16559 2.68383 2.77316 3.42324 3.52505 3.68257 3.76091 3.93860 4.08459 4.58318 4.60434 4.61009 4.68173 4.76865 4.83267 4.87129 4.92482 4.99858 5.06868 5.11687 5.16229 5.18018 5.20407 5.27791 5.29524 5.33719 5.42644 5.48077 5.50501 5.56377 5.58203 5.62150 5.68566 5.80278 5.87286 6.06428 6.11837 6.16063 6.16743 6.36443 6.40698 6.50914 6.56431 6.78892 6.92974 7.01035 7.17233 7.62364 7.71834 7.74922 8.34263 9.04224 9.60716 10.27037 11.14996 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.002291 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.496517 B =12219.018120 C =13188.946586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.024 3.976 3 C -0.199 4.199 4 C -0.031 4.031 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.593 5.593 8 C 0.120 3.880 9 C 0.041 3.959 10 N -0.526 5.526 11 C 0.068 3.932 12 H 0.052 0.948 13 C -0.120 4.120 14 C 0.119 3.881 15 N -0.609 5.609 16 C -0.331 4.331 17 H 0.076 0.924 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.068 2.932 21 H -0.294 1.294 22 H -0.293 1.293 23 H -0.300 1.300 24 C 0.148 3.852 25 C 0.039 3.961 26 C 0.081 3.919 27 N -0.257 5.257 28 C 0.079 3.921 29 N -0.278 5.278 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.176 0.824 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.115 0.885 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.725 -23.282 -13.293 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C -0.228 4.228 4 C -0.160 4.160 5 C 0.379 3.621 6 O -0.423 6.423 7 N -0.325 5.325 8 C -0.002 4.002 9 C -0.087 4.087 10 N -0.251 5.251 11 C -0.041 4.041 12 H 0.070 0.930 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.337 5.337 16 C -0.458 4.458 17 H 0.094 0.906 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.228 1.228 24 C 0.022 3.978 25 C -0.089 4.089 26 C -0.041 4.041 27 N -0.044 5.044 28 C -0.061 4.061 29 N -0.112 5.112 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.193 0.807 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.132 0.868 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.205 -23.434 -13.124 29.501 hybrid contribution 1.458 -0.634 -0.018 1.590 sum -10.747 -24.068 -13.142 29.453 Atomic orbital electron populations 1.20109 0.86212 1.03337 1.02957 1.22087 0.97235 0.88760 1.05176 1.22548 0.90277 1.00673 1.09287 1.21347 0.95749 0.85356 1.13535 1.16921 0.86193 0.81451 0.77486 1.90755 1.31665 1.70129 1.49776 1.47834 1.13595 1.08825 1.62260 1.21840 0.87369 0.93183 0.97827 1.22478 0.93481 0.97102 0.95670 1.61965 1.05464 1.22539 1.35157 1.22918 0.97579 0.93988 0.89589 0.93041 1.22633 0.96350 0.96802 1.00084 1.21613 0.87102 0.94696 0.97232 1.44769 1.11626 1.32830 1.44483 1.19990 0.91496 1.03459 1.30903 0.90584 1.25776 1.06704 0.95498 0.94139 1.70935 1.05407 1.49502 1.29864 0.83732 0.75505 0.75316 0.75280 1.22153 1.22096 1.22780 1.21511 0.95549 0.87851 0.92934 1.22493 0.96073 0.94601 0.95771 1.22849 0.86995 0.98512 0.95763 1.45542 1.05166 1.04221 1.49476 1.22443 0.86168 0.92877 1.04624 1.73142 0.89442 1.27948 1.20674 0.90651 0.90347 0.90975 0.80719 0.89992 0.88492 0.88722 0.94454 0.91749 0.90497 0.94314 0.95396 0.92722 0.94871 0.94261 0.94580 0.88783 0.89805 0.86788 0.89882 0.88755 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.45 36.00 0.38 -0.01 16 2 C 0.02 0.22 7.22 -82.47 -0.60 -0.38 16 3 C -0.20 -1.75 8.68 -38.98 -0.34 -2.09 16 4 C -0.03 -0.33 6.66 -82.06 -0.55 -0.88 16 5 C 0.59 6.91 7.62 -12.64 -0.10 6.82 16 6 O -0.54 -7.49 14.20 5.25 0.07 -7.42 16 7 N -0.59 -6.14 3.01 -173.83 -0.52 -6.66 16 8 C 0.12 1.25 6.61 -3.61 -0.02 1.23 16 9 C 0.04 0.48 5.52 -3.71 -0.02 0.46 16 10 N -0.53 -6.60 4.52 -223.65 -1.01 -7.62 16 11 C 0.07 1.07 2.73 -65.44 -0.18 0.89 16 12 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.12 -1.92 5.03 -24.89 -0.13 -2.04 16 14 C 0.12 2.56 4.92 -3.07 -0.02 2.55 16 15 N -0.61 -14.91 3.30 -169.94 -0.56 -15.47 16 16 C -0.33 -9.50 10.42 -15.06 -0.16 -9.66 16 17 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 18 C -0.02 -0.60 5.42 -17.43 -0.09 -0.69 16 19 N -0.92 -28.69 13.70 55.49 0.76 -27.93 16 20 Si 1.07 26.83 24.67 -169.99 -4.19 22.64 16 21 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 22 H -0.29 -7.06 6.77 56.52 0.38 -6.67 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 24 C 0.15 2.91 5.95 -2.41 -0.01 2.90 16 25 C 0.04 0.40 5.43 -3.70 -0.02 0.38 16 26 C 0.08 0.68 5.34 -3.60 -0.02 0.66 16 27 N -0.26 -2.74 3.75 -63.88 -0.24 -2.98 16 28 C 0.08 0.62 11.12 59.85 0.67 1.28 16 29 N -0.28 -3.04 11.90 33.64 0.40 -2.64 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 1.09 5.61 -52.49 -0.29 0.79 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.04 7.04 -51.93 -0.37 0.68 16 36 H 0.09 1.13 7.05 -51.93 -0.37 0.76 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16 39 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 40 H 0.04 0.88 7.76 -51.93 -0.40 0.48 16 41 H 0.03 0.64 3.89 -51.93 -0.20 0.44 16 42 H 0.26 8.12 8.73 -40.82 -0.36 7.77 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.87 6.64 -51.93 -0.34 0.53 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.11 0.82 3.68 -51.93 -0.19 0.63 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 51 H 0.12 1.01 5.94 -51.93 -0.31 0.70 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -35.03 386.63 -8.66 -43.69 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.99 Total: -2.86 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.20 Total: 1.42 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.17 Total: -63.29 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.19 Total: 22.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.03 -8.66 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.105 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds