Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39675 * 126.07041 * 2 1 4 4 C 1.38409 * 105.35907 * 180.11389 * 3 2 1 5 5 C 1.47156 * 126.88678 * 179.91874 * 4 3 2 6 6 O 1.21629 * 120.00330 * 198.24571 * 5 4 3 7 7 N 1.34781 * 119.99934 * 18.24241 * 5 4 3 8 8 C 1.47080 * 120.88507 * 186.26243 * 7 5 4 9 9 C 1.53231 * 108.52147 * 231.20805 * 8 7 5 10 10 N 1.46899 * 109.34200 * 306.16662 * 9 8 7 11 11 C 1.46894 * 111.00244 * 187.25509 * 10 9 8 12 12 H 1.08995 * 110.88721 * 303.87780 * 11 10 9 13 13 C 1.55164 * 111.00430 * 179.97438 * 11 10 9 14 14 C 1.54322 * 102.94413 * 206.42324 * 13 11 10 15 15 N 1.47022 * 107.26996 * 22.19375 * 14 13 11 16 16 C 1.36941 * 125.65008 * 181.02461 * 15 14 13 17 17 H 1.07994 * 120.00257 * 171.42692 * 16 15 14 18 18 C 1.38816 * 119.99666 * 351.42448 * 16 15 14 19 19 N 1.31626 * 119.99485 * 151.32468 * 18 16 15 20 20 Si 1.86797 * 120.00180 * 331.32805 * 18 16 15 21 21 H 1.48501 * 109.47051 * 84.60464 * 20 18 16 22 22 H 1.48498 * 109.46957 * 324.60403 * 20 18 16 23 23 H 1.48496 * 109.47250 * 204.60283 * 20 18 16 24 24 C 1.47421 * 108.70451 * 1.28345 * 15 14 13 25 25 C 1.46899 * 111.26961 * 63.10331 * 10 9 8 26 26 C 1.47081 * 120.88138 * 6.28387 * 7 5 4 27 27 N 1.36602 * 106.22752 * 359.65506 * 4 3 2 28 28 C 1.46501 * 125.18508 * 180.20903 * 27 4 3 29 29 N 1.28436 * 109.62260 * 0.22504 * 27 4 3 30 30 H 1.08999 * 109.47011 * 270.26460 * 1 2 3 31 31 H 1.09002 * 109.47087 * 30.25820 * 1 2 3 32 32 H 1.08998 * 109.47553 * 150.26043 * 1 2 3 33 33 H 1.07993 * 127.32123 * 0.02782 * 3 2 1 34 34 H 1.08994 * 109.62920 * 111.49082 * 8 7 5 35 35 H 1.09001 * 109.62583 * 350.91620 * 8 7 5 36 36 H 1.09001 * 109.49442 * 186.20864 * 9 8 7 37 37 H 1.09000 * 109.52078 * 66.13912 * 9 8 7 38 38 H 1.08998 * 110.71769 * 88.06249 * 13 11 10 39 39 H 1.08996 * 110.86976 * 324.85920 * 13 11 10 40 40 H 1.09002 * 109.88420 * 262.77745 * 14 13 11 41 41 H 1.09004 * 110.01356 * 141.68291 * 14 13 11 42 42 H 0.97000 * 119.99949 * 5.02289 * 19 18 16 43 43 H 1.09007 * 110.36661 * 94.48256 * 24 15 14 44 44 H 1.08993 * 110.37160 * 216.80291 * 24 15 14 45 45 H 1.09001 * 109.49250 * 56.86036 * 25 10 9 46 46 H 1.08999 * 109.49673 * 176.93993 * 25 10 9 47 47 H 1.09000 * 109.63007 * 248.50960 * 26 7 5 48 48 H 1.09005 * 109.62872 * 8.88711 * 26 7 5 49 49 H 1.08997 * 109.47720 * 93.87712 * 28 27 4 50 50 H 1.09009 * 109.46828 * 213.87597 * 28 27 4 51 51 H 1.09003 * 109.47302 * 333.87185 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 -0.0027 5 6 4.8664 1.4280 -0.0054 6 8 5.9153 0.9093 -0.3373 7 7 4.8421 2.7252 0.3598 8 6 6.0414 3.5674 0.2347 9 6 6.2881 4.2655 1.5762 10 7 5.0697 4.9768 1.9858 11 6 5.3157 5.7989 3.1780 12 1 5.7069 5.1921 3.9945 13 6 4.0290 6.5507 3.6103 14 6 4.5828 7.7910 4.3426 15 7 5.9560 8.0043 3.8626 16 6 6.8035 8.9947 4.2824 17 1 7.8383 8.9868 3.9736 18 6 6.3323 10.0088 5.1049 19 7 7.1488 10.6056 5.9474 20 14 4.5396 10.5264 5.0163 21 1 3.7232 9.6323 5.8762 22 1 4.0657 10.4309 3.6122 23 1 4.4049 11.9272 5.4901 24 6 6.2674 6.9792 2.8500 25 6 3.9578 4.0434 2.2102 26 6 3.6157 3.3360 0.8946 27 7 3.5172 -0.7223 0.0038 28 6 4.6449 -1.6575 0.0081 29 7 2.2774 -1.0578 0.0052 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3634 -0.8923 -0.5098 33 1 2.0207 2.1639 0.0004 34 1 5.8848 4.3142 -0.5435 35 1 6.9005 2.9458 -0.0180 36 1 7.1067 4.9775 1.4707 37 1 6.5468 3.5231 2.3311 38 1 3.4330 5.9378 4.2865 39 1 3.4415 6.8463 2.7411 40 1 4.5893 7.6144 5.4182 41 1 3.9706 8.6635 4.1141 42 1 8.0941 10.3883 5.9428 43 1 6.0693 7.3623 1.8489 44 1 7.3069 6.6632 2.9371 45 1 4.2487 3.3036 2.9559 46 1 3.0864 4.5942 2.5643 47 1 3.2258 4.0607 0.1798 48 1 2.8696 2.5620 1.0749 49 1 4.8804 -1.9381 1.0347 50 1 4.3798 -2.5490 -0.5605 51 1 5.5135 -1.1814 -0.4468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046012171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = 86.789798 kcal Electronic energy + Delta-G solvation = -31311.978968 eV Core-core repulsion = 27249.188427 eV Total energy + Delta-G solvation = -4062.790541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.68064 -41.22290 -39.95633 -38.28928 -35.95514 -34.93500 -34.26208 -33.09156 -31.54360 -31.20416 -30.55809 -29.81495 -27.84796 -26.44622 -25.68865 -24.75261 -24.22270 -22.55121 -22.15674 -21.73703 -21.06041 -19.86886 -19.51176 -18.40842 -17.81430 -17.45636 -17.15982 -17.01801 -16.77315 -16.25474 -15.97236 -15.72686 -15.59798 -15.15691 -15.08158 -15.05470 -14.49337 -14.35404 -14.33035 -14.11354 -13.96624 -13.60181 -13.44395 -13.28635 -13.19071 -13.11673 -12.97476 -12.86243 -12.59917 -12.35976 -12.24955 -12.16531 -11.81748 -11.70188 -11.56155 -11.46504 -11.18731 -11.07672 -10.55081 -10.24322 -9.91319 -9.82025 -9.34919 -9.16628 -8.65881 -5.40552 0.13773 1.24978 1.41310 1.51083 1.54260 1.73698 1.94747 1.96944 2.53404 2.66353 3.08012 3.19757 3.44857 3.48554 3.60283 3.81889 3.89418 3.96410 4.02708 4.13765 4.20044 4.21309 4.23365 4.31523 4.34657 4.36816 4.38794 4.49509 4.56881 4.57588 4.62067 4.71066 4.75890 4.82354 4.85907 4.93795 4.94145 4.96755 5.02687 5.04383 5.13696 5.15151 5.25980 5.30302 5.54425 5.57174 5.72885 5.94531 6.03006 6.11049 6.18914 6.81707 6.83518 7.03580 7.49673 8.14024 8.83719 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.002291 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.496517 B =12219.018120 C =13188.946586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.017 3.983 3 C -0.188 4.188 4 C -0.053 4.053 5 C 0.590 3.410 6 O -0.575 6.575 7 N -0.592 5.592 8 C 0.126 3.874 9 C 0.045 3.955 10 N -0.523 5.523 11 C 0.086 3.914 12 H 0.043 0.957 13 C -0.105 4.105 14 C 0.107 3.893 15 N -0.632 5.632 16 C -0.324 4.324 17 H 0.042 0.958 18 C -0.079 4.079 19 N -0.951 5.951 20 Si 1.112 2.888 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.307 1.307 24 C 0.145 3.855 25 C 0.038 3.962 26 C 0.084 3.916 27 N -0.269 5.269 28 C 0.076 3.924 29 N -0.302 5.302 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.204 0.796 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.247 0.753 43 H 0.036 0.964 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.131 0.869 49 H 0.091 0.909 50 H 0.109 0.891 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -24.488 -14.390 32.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.217 4.217 4 C -0.181 4.181 5 C 0.378 3.622 6 O -0.456 6.456 7 N -0.323 5.323 8 C 0.004 3.996 9 C -0.084 4.084 10 N -0.248 5.248 11 C -0.023 4.023 12 H 0.061 0.939 13 C -0.142 4.142 14 C -0.018 4.018 15 N -0.360 5.360 16 C -0.452 4.452 17 H 0.060 0.940 18 C -0.273 4.273 19 N -0.595 5.595 20 Si 0.939 3.061 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.236 1.236 24 C 0.020 3.980 25 C -0.090 4.090 26 C -0.037 4.037 27 N -0.056 5.056 28 C -0.063 4.063 29 N -0.136 5.136 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.220 0.780 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.148 0.852 49 H 0.110 0.890 50 H 0.128 0.872 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.146 -24.690 -14.246 32.760 hybrid contribution 2.782 -0.335 0.270 2.815 sum -13.364 -25.025 -13.976 31.626 Atomic orbital electron populations 1.20254 0.83914 1.04375 1.03977 1.22717 0.98705 0.88424 1.04073 1.22901 0.89172 1.01883 1.07713 1.21419 0.96022 0.85642 1.15028 1.17113 0.86212 0.81750 0.77106 1.90740 1.32819 1.70792 1.51221 1.47910 1.14142 1.08447 1.61823 1.21733 0.87576 0.93128 0.97142 1.22436 0.93192 0.96649 0.96123 1.61943 1.06312 1.23345 1.33200 1.22573 0.96425 0.92888 0.90463 0.93918 1.22607 0.96291 0.94419 1.00923 1.21829 0.85482 0.97301 0.97187 1.44865 1.12735 1.32528 1.45840 1.19888 0.90942 1.04419 1.29961 0.93996 1.27094 1.10346 0.95784 0.94046 1.71052 1.04881 1.51301 1.32246 0.83177 0.71360 0.74889 0.76653 1.19271 1.20129 1.23560 1.21625 0.96180 0.88373 0.91860 1.22641 0.95483 0.94202 0.96686 1.23014 0.86375 0.99085 0.95220 1.45769 1.05485 1.04559 1.49804 1.22517 0.85411 0.93021 1.05354 1.73139 0.89784 1.29116 1.21557 0.89548 0.88213 0.91067 0.77956 0.88985 0.89203 0.89528 0.95337 0.88273 0.88436 0.95748 0.95616 0.94335 0.94587 0.95538 0.95189 0.86762 0.87931 0.85156 0.89033 0.87231 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.45 71.23 0.74 0.20 16 2 C 0.02 0.27 7.22 43.05 0.31 0.58 16 3 C -0.19 -2.69 8.68 22.66 0.20 -2.49 16 4 C -0.05 -1.03 6.66 40.78 0.27 -0.76 16 5 C 0.59 12.97 7.62 86.58 0.66 13.63 16 6 O -0.57 -15.74 14.20 -4.12 -0.06 -15.80 16 7 N -0.59 -10.84 3.01 -822.13 -2.47 -13.32 16 8 C 0.13 2.44 6.61 86.35 0.57 3.01 16 9 C 0.04 0.98 5.52 86.38 0.48 1.46 16 10 N -0.52 -11.52 4.52 -861.49 -3.90 -15.42 16 11 C 0.09 2.48 2.73 46.39 0.13 2.61 16 12 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 13 C -0.10 -2.88 5.03 31.78 0.16 -2.72 16 14 C 0.11 4.33 4.92 86.73 0.43 4.76 16 15 N -0.63 -30.67 3.30 -691.55 -2.28 -32.95 16 16 C -0.32 -19.03 10.42 84.03 0.88 -18.16 16 17 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 18 C -0.08 -4.72 5.42 84.86 0.46 -4.26 16 19 N -0.95 -61.53 13.70 21.65 0.30 -61.23 16 20 Si 1.11 53.70 24.67 68.60 1.69 55.40 16 21 H -0.27 -11.62 6.68 99.48 0.66 -10.96 16 22 H -0.27 -12.30 6.77 99.48 0.67 -11.63 16 23 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 24 C 0.15 5.61 5.95 86.93 0.52 6.13 16 25 C 0.04 0.61 5.43 86.38 0.47 1.08 16 26 C 0.08 1.07 5.34 86.35 0.46 1.53 16 27 N -0.27 -5.43 3.75 -356.01 -1.33 -6.76 16 28 C 0.08 1.18 11.12 127.77 1.42 2.60 16 29 N -0.30 -6.12 11.90 -47.50 -0.57 -6.68 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.20 1.52 5.61 -2.91 -0.02 1.51 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.89 7.04 -2.39 -0.02 1.88 16 36 H 0.09 2.03 7.05 -2.39 -0.02 2.01 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 2.11 7.96 -2.39 -0.02 2.09 16 39 H 0.10 2.35 8.11 -2.39 -0.02 2.33 16 40 H 0.02 1.06 7.76 -2.39 -0.02 1.04 16 41 H 0.03 1.09 3.89 -2.39 -0.01 1.08 16 42 H 0.25 16.11 8.73 -92.71 -0.81 15.31 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.03 1.07 7.87 -2.39 -0.02 1.05 16 45 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 1.43 6.64 -2.39 -0.02 1.42 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.13 1.27 3.68 -2.38 -0.01 1.26 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 51 H 0.10 1.86 5.94 -2.39 -0.01 1.85 16 Total: -1.00 -79.07 386.63 0.35 -78.72 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.82 Total: 8.86 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 8.15 Total: 9.19 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -10.26 Total: -136.36 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.06 Total: -15.80 kcal Atomic # 14 Polarization: 53.70 SS G_CDS: 1.69 Total: 55.40 kcal Total: -79.07 0.35 -78.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046012171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.510 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds