Wall clock time and date at job start Wed Apr 1 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35039 * 126.38536 * 2 1 4 4 H 0.97003 * 124.88047 * 0.03342 * 3 2 1 5 5 N 1.28461 * 110.22993 * 180.02562 * 3 2 1 6 6 C 1.31808 * 110.07636 * 0.02562 * 5 3 2 7 7 C 1.47709 * 126.52182 * 179.97438 * 6 5 3 8 8 O 1.21569 * 120.00293 * 186.56464 * 7 6 5 9 9 N 1.34776 * 119.99972 * 6.56382 * 7 6 5 10 10 C 1.47079 * 120.88448 * 186.32284 * 9 7 6 11 11 C 1.53244 * 108.52242 * 231.20829 * 10 9 7 12 12 N 1.46897 * 109.33466 * 306.16792 * 11 10 9 13 13 C 1.46911 * 110.99463 * 187.25341 * 12 11 10 14 14 H 1.08999 * 110.63672 * 292.02784 * 13 12 11 15 15 C 1.55154 * 110.71904 * 55.16938 * 13 12 11 16 16 C 1.54910 * 101.57892 * 153.86153 * 15 13 12 17 17 N 1.47429 * 104.83381 * 322.99589 * 16 15 13 18 18 C 1.36937 * 125.64322 * 204.08970 * 17 16 15 19 19 H 1.08004 * 119.99681 * 184.36173 * 18 17 16 20 20 C 1.38813 * 120.00418 * 4.36218 * 18 17 16 21 21 N 1.31614 * 119.99742 * 4.90087 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 184.90217 * 20 18 17 23 23 H 1.48505 * 109.47340 * 84.99502 * 22 20 18 24 24 H 1.48506 * 109.47198 * 325.00119 * 22 20 18 25 25 H 1.48493 * 109.47405 * 204.99911 * 22 20 18 26 26 C 1.47009 * 108.70315 * 24.35053 * 17 16 15 27 27 C 1.46898 * 111.27011 * 63.10776 * 12 11 10 28 28 C 1.47087 * 120.87943 * 6.34503 * 9 7 6 29 29 C 1.35368 * 126.38551 * 180.31828 * 2 1 3 30 30 C 1.50690 * 127.24616 * 359.97326 * 29 2 1 31 31 H 1.09003 * 109.47095 * 89.97256 * 1 2 3 32 32 H 1.08989 * 109.47173 * 209.97419 * 1 2 3 33 33 H 1.09004 * 109.47061 * 329.97877 * 1 2 3 34 34 H 1.08994 * 109.62990 * 111.49370 * 10 9 7 35 35 H 1.09000 * 109.62384 * 350.91411 * 10 9 7 36 36 H 1.09000 * 109.49014 * 186.20738 * 11 10 9 37 37 H 1.09003 * 109.49195 * 66.12604 * 11 10 9 38 38 H 1.08998 * 111.00393 * 35.79814 * 15 13 12 39 39 H 1.08992 * 111.00730 * 271.93589 * 15 13 12 40 40 H 1.08999 * 110.37035 * 204.14930 * 16 15 13 41 41 H 1.09004 * 110.36512 * 81.83119 * 16 15 13 42 42 H 0.97007 * 119.99608 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.88382 * 118.13036 * 26 17 16 44 44 H 1.09003 * 109.88756 * 239.29593 * 26 17 16 45 45 H 1.08993 * 109.49634 * 56.85346 * 27 12 11 46 46 H 1.09000 * 109.49030 * 176.93165 * 27 12 11 47 47 H 1.09000 * 109.62684 * 248.50012 * 28 9 7 48 48 H 1.08996 * 109.62732 * 9.08401 * 28 9 7 49 49 H 1.09003 * 109.47378 * 270.13502 * 30 29 2 50 50 H 1.09004 * 109.47527 * 30.14381 * 30 29 2 51 51 H 1.09002 * 109.47168 * 150.13917 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9965 2.0058 0.0005 5 7 3.5420 0.7297 -0.0005 6 6 3.6321 -0.5853 -0.0015 7 6 4.8765 -1.3811 -0.0029 8 8 4.8250 -2.5897 -0.1240 9 7 6.0690 -0.7674 0.1302 10 6 7.3250 -1.5205 -0.0063 11 6 8.2034 -1.2275 1.2148 12 7 8.3630 0.2253 1.3617 13 6 9.3360 0.5441 2.4153 14 1 8.9466 0.2659 3.3947 15 6 10.6910 -0.1609 2.1427 16 6 11.6828 0.7789 2.8727 17 7 11.1533 2.1360 2.6461 18 6 11.8838 3.2937 2.6807 19 1 11.3895 4.2476 2.5706 20 6 13.2597 3.2413 2.8573 21 7 13.8744 2.0781 2.8949 22 14 14.2386 4.8215 3.0418 23 1 14.2158 5.2551 4.4620 24 1 13.6356 5.8794 2.1917 25 1 15.6423 4.5865 2.6185 26 6 9.7100 2.0410 2.3829 27 6 7.0736 0.8797 1.6205 28 6 6.1489 0.6732 0.4161 29 6 2.3100 -1.0898 -0.0061 30 6 1.8854 -2.5356 -0.0135 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3633 -0.8901 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 7.8426 -1.2081 -0.9131 35 1 7.1086 -2.5877 -0.0540 36 1 9.1814 -1.6891 1.0784 37 1 7.7304 -1.6337 2.1089 38 1 10.9035 -0.1990 1.0743 39 1 10.7064 -1.1597 2.5785 40 1 12.6805 0.6844 2.4440 41 1 11.7042 0.5533 3.9389 42 1 14.8360 2.0415 3.0180 43 1 9.1567 2.5800 3.1520 44 1 9.4841 2.4566 1.4009 45 1 6.6165 0.4442 2.5089 46 1 7.2323 1.9465 1.7784 47 1 6.5536 1.1965 -0.4502 48 1 5.1551 1.0562 0.6475 49 1 1.7810 -2.8890 1.0123 50 1 0.9301 -2.6311 -0.5297 51 1 2.6379 -3.1326 -0.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046014388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:40 Heat of formation + Delta-G solvation = 91.098969 kcal Electronic energy + Delta-G solvation = -31128.678947 eV Core-core repulsion = 27066.075266 eV Total energy + Delta-G solvation = -4062.603681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.09220 -40.01775 -38.42653 -36.57164 -34.37396 -33.72570 -32.90590 -31.89559 -31.17546 -29.33550 -28.69204 -27.86637 -26.49789 -26.12855 -24.30618 -24.06538 -23.11903 -21.09915 -20.37589 -19.92616 -19.58273 -18.90131 -18.00922 -16.96468 -16.80256 -16.37970 -16.03420 -15.41096 -15.11066 -14.73204 -14.52285 -14.47980 -14.18678 -13.97239 -13.91041 -13.47348 -13.35631 -13.16455 -13.10767 -12.82849 -12.69311 -12.62920 -12.35931 -12.02775 -11.75584 -11.61812 -11.50171 -11.26102 -11.19846 -10.91778 -10.80106 -10.68311 -10.23629 -10.09313 -10.02093 -9.97204 -9.74692 -9.60820 -9.44901 -9.00694 -8.72262 -8.66365 -8.03806 -6.77600 -5.56682 -3.04343 1.28762 1.73205 2.44142 2.92492 3.22663 3.42679 3.47012 3.49176 4.00241 4.14685 4.26299 4.49846 4.53917 4.78023 4.92363 4.98448 5.01632 5.06532 5.19416 5.31771 5.34212 5.39000 5.41046 5.50086 5.54601 5.55985 5.57647 5.63646 5.69531 5.80747 5.83960 5.89946 5.92276 5.93773 5.97907 6.12063 6.27216 6.38790 6.43429 6.60495 6.62381 6.70544 6.74634 6.75895 7.27234 7.30566 7.48630 7.54038 7.55975 7.68181 7.91323 8.07453 8.46545 9.27114 9.88306 10.52643 11.41810 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002127 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.571270 B =13162.074516 C =14115.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 N -0.383 5.383 4 H 0.445 0.555 5 N -0.254 5.254 6 C -0.004 4.004 7 C 0.602 3.398 8 O -0.536 6.536 9 N -0.598 5.598 10 C 0.118 3.882 11 C 0.043 3.957 12 N -0.526 5.526 13 C 0.071 3.929 14 H 0.041 0.959 15 C -0.133 4.133 16 C 0.138 3.862 17 N -0.601 5.601 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.916 3.084 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.147 3.853 27 C 0.041 3.959 28 C 0.096 3.904 29 C -0.145 4.145 30 C -0.080 4.080 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.123 0.877 41 H 0.004 0.996 42 H 0.252 0.748 43 H 0.015 0.985 44 H 0.036 0.964 45 H 0.031 0.969 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.123 0.877 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.663 -6.289 -6.413 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 N -0.096 5.096 4 H 0.289 0.711 5 N -0.090 5.090 6 C -0.165 4.165 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.331 5.331 10 C -0.005 4.005 11 C -0.086 4.086 12 N -0.251 5.251 13 C -0.037 4.037 14 H 0.058 0.942 15 C -0.172 4.172 16 C 0.013 3.987 17 N -0.327 5.327 18 C -0.346 4.346 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.217 1.217 24 H -0.208 1.208 25 H -0.217 1.217 26 C 0.021 3.979 27 C -0.088 4.088 28 C -0.027 4.027 29 C -0.155 4.155 30 C -0.138 4.138 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.022 0.978 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.140 0.860 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.616 -5.755 -6.907 28.093 hybrid contribution -0.396 0.588 1.055 1.271 sum -27.012 -5.167 -5.852 28.118 Atomic orbital electron populations 1.20348 0.86545 1.03982 1.03352 1.21226 0.95233 0.86903 1.08243 1.43374 1.03163 1.09527 1.53564 0.71095 1.73452 1.00964 1.14734 1.19847 1.21836 0.94848 0.89600 1.10179 1.16960 0.81438 0.86132 0.76634 1.90743 1.86208 1.13058 1.51199 1.48030 1.05262 1.10485 1.69281 1.21802 0.82739 0.97314 0.98600 1.22455 1.00239 0.89200 0.96725 1.62018 1.08367 1.08457 1.46240 1.22705 0.92150 0.97901 0.90925 0.94154 1.23077 0.94536 0.97906 1.01665 1.22202 0.99198 0.81693 0.95627 1.44435 1.01911 1.03490 1.82907 1.19064 0.89046 0.84646 1.41827 0.90564 1.24783 0.96307 0.97107 1.02744 1.69621 1.08331 1.21854 1.57250 0.86061 0.79330 0.82197 0.77736 1.21707 1.20765 1.21683 1.21210 0.87034 0.91887 0.97779 1.22486 0.89561 1.00574 0.96135 1.22542 1.02347 0.79727 0.98132 1.20099 0.90543 0.96710 1.08126 1.20201 1.01478 0.89751 1.02336 0.90282 0.89512 0.91036 0.90398 0.88727 0.88896 0.94833 0.91039 0.92855 0.86003 0.97775 0.93734 0.96740 0.94638 0.95061 0.89232 0.90658 0.86025 0.91541 0.91985 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.14 36.01 0.37 0.08 16 2 C 0.01 0.07 7.23 -82.20 -0.59 -0.52 16 3 N -0.38 -2.76 6.83 33.50 0.23 -2.53 16 4 H 0.44 1.56 8.96 -190.44 -1.71 -0.14 16 5 N -0.25 -2.68 8.73 33.42 0.29 -2.39 16 6 C 0.00 -0.05 6.83 -82.77 -0.57 -0.62 16 7 C 0.60 8.54 7.70 -12.39 -0.10 8.45 16 8 O -0.54 -8.59 14.54 5.31 0.08 -8.51 16 9 N -0.60 -8.05 3.01 -173.62 -0.52 -8.57 16 10 C 0.12 1.53 6.61 -3.60 -0.02 1.51 16 11 C 0.04 0.59 5.42 -3.70 -0.02 0.57 16 12 N -0.53 -8.24 4.45 -224.14 -1.00 -9.24 16 13 C 0.07 1.31 2.64 -65.87 -0.17 1.14 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.13 -2.61 5.12 -24.58 -0.13 -2.73 16 16 C 0.14 3.43 6.15 -2.53 -0.02 3.41 16 17 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 18 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.41 5.47 -17.43 -0.10 -0.50 16 21 N -0.92 -27.11 10.04 55.49 0.56 -26.56 16 22 Si 0.92 22.33 29.56 -169.99 -5.02 17.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 C 0.15 3.19 5.85 -3.07 -0.02 3.17 16 27 C 0.04 0.57 5.51 -3.70 -0.02 0.55 16 28 C 0.10 1.20 6.24 -3.60 -0.02 1.18 16 29 C -0.14 -1.48 6.24 -104.41 -0.65 -2.13 16 30 C -0.08 -0.71 9.67 36.00 0.35 -0.36 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.26 7.98 -51.94 -0.41 -0.15 16 33 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 36 H 0.09 1.26 6.60 -51.93 -0.34 0.92 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 39 H 0.05 0.92 7.95 -51.93 -0.41 0.51 16 40 H 0.12 3.40 5.48 -51.93 -0.28 3.11 16 41 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.04 0.78 7.99 -51.93 -0.42 0.37 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 1.24 7.16 -51.93 -0.37 0.87 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.12 1.44 4.30 -60.56 -0.26 1.17 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.39 8.00 -51.93 -0.42 -0.02 16 51 H 0.08 0.93 6.62 -51.93 -0.34 0.58 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -34.02 392.73 -11.44 -45.46 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -9.53 Total: -1.35 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.86 Total: 6.87 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.02 Total: -65.69 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.02 -11.44 -45.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046014388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.558 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds