Wall clock time and date at job start Wed Apr 1 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35039 * 126.38536 * 2 1 4 4 H 0.97003 * 124.88047 * 0.03342 * 3 2 1 5 5 N 1.28461 * 110.22993 * 180.02562 * 3 2 1 6 6 C 1.31808 * 110.07636 * 0.02562 * 5 3 2 7 7 C 1.47709 * 126.52182 * 179.97438 * 6 5 3 8 8 O 1.21569 * 120.00293 * 186.56464 * 7 6 5 9 9 N 1.34776 * 119.99972 * 6.56382 * 7 6 5 10 10 C 1.47079 * 120.88448 * 186.32284 * 9 7 6 11 11 C 1.53244 * 108.52242 * 231.20829 * 10 9 7 12 12 N 1.46897 * 109.33466 * 306.16792 * 11 10 9 13 13 C 1.46911 * 110.99463 * 187.25341 * 12 11 10 14 14 H 1.08999 * 110.63672 * 292.02784 * 13 12 11 15 15 C 1.55154 * 110.71904 * 55.16938 * 13 12 11 16 16 C 1.54910 * 101.57892 * 153.86153 * 15 13 12 17 17 N 1.47429 * 104.83381 * 322.99589 * 16 15 13 18 18 C 1.36937 * 125.64322 * 204.08970 * 17 16 15 19 19 H 1.08004 * 119.99681 * 184.36173 * 18 17 16 20 20 C 1.38813 * 120.00418 * 4.36218 * 18 17 16 21 21 N 1.31614 * 119.99742 * 4.90087 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 184.90217 * 20 18 17 23 23 H 1.48505 * 109.47340 * 84.99502 * 22 20 18 24 24 H 1.48506 * 109.47198 * 325.00119 * 22 20 18 25 25 H 1.48493 * 109.47405 * 204.99911 * 22 20 18 26 26 C 1.47009 * 108.70315 * 24.35053 * 17 16 15 27 27 C 1.46898 * 111.27011 * 63.10776 * 12 11 10 28 28 C 1.47087 * 120.87943 * 6.34503 * 9 7 6 29 29 C 1.35368 * 126.38551 * 180.31828 * 2 1 3 30 30 C 1.50690 * 127.24616 * 359.97326 * 29 2 1 31 31 H 1.09003 * 109.47095 * 89.97256 * 1 2 3 32 32 H 1.08989 * 109.47173 * 209.97419 * 1 2 3 33 33 H 1.09004 * 109.47061 * 329.97877 * 1 2 3 34 34 H 1.08994 * 109.62990 * 111.49370 * 10 9 7 35 35 H 1.09000 * 109.62384 * 350.91411 * 10 9 7 36 36 H 1.09000 * 109.49014 * 186.20738 * 11 10 9 37 37 H 1.09003 * 109.49195 * 66.12604 * 11 10 9 38 38 H 1.08998 * 111.00393 * 35.79814 * 15 13 12 39 39 H 1.08992 * 111.00730 * 271.93589 * 15 13 12 40 40 H 1.08999 * 110.37035 * 204.14930 * 16 15 13 41 41 H 1.09004 * 110.36512 * 81.83119 * 16 15 13 42 42 H 0.97007 * 119.99608 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.88382 * 118.13036 * 26 17 16 44 44 H 1.09003 * 109.88756 * 239.29593 * 26 17 16 45 45 H 1.08993 * 109.49634 * 56.85346 * 27 12 11 46 46 H 1.09000 * 109.49030 * 176.93165 * 27 12 11 47 47 H 1.09000 * 109.62684 * 248.50012 * 28 9 7 48 48 H 1.08996 * 109.62732 * 9.08401 * 28 9 7 49 49 H 1.09003 * 109.47378 * 270.13502 * 30 29 2 50 50 H 1.09004 * 109.47527 * 30.14381 * 30 29 2 51 51 H 1.09002 * 109.47168 * 150.13917 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9965 2.0058 0.0005 5 7 3.5420 0.7297 -0.0005 6 6 3.6321 -0.5853 -0.0015 7 6 4.8765 -1.3811 -0.0029 8 8 4.8250 -2.5897 -0.1240 9 7 6.0690 -0.7674 0.1302 10 6 7.3250 -1.5205 -0.0063 11 6 8.2034 -1.2275 1.2148 12 7 8.3630 0.2253 1.3617 13 6 9.3360 0.5441 2.4153 14 1 8.9466 0.2659 3.3947 15 6 10.6910 -0.1609 2.1427 16 6 11.6828 0.7789 2.8727 17 7 11.1533 2.1360 2.6461 18 6 11.8838 3.2937 2.6807 19 1 11.3895 4.2476 2.5706 20 6 13.2597 3.2413 2.8573 21 7 13.8744 2.0781 2.8949 22 14 14.2386 4.8215 3.0418 23 1 14.2158 5.2551 4.4620 24 1 13.6356 5.8794 2.1917 25 1 15.6423 4.5865 2.6185 26 6 9.7100 2.0410 2.3829 27 6 7.0736 0.8797 1.6205 28 6 6.1489 0.6732 0.4161 29 6 2.3100 -1.0898 -0.0061 30 6 1.8854 -2.5356 -0.0135 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3633 -0.8901 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 7.8426 -1.2081 -0.9131 35 1 7.1086 -2.5877 -0.0540 36 1 9.1814 -1.6891 1.0784 37 1 7.7304 -1.6337 2.1089 38 1 10.9035 -0.1990 1.0743 39 1 10.7064 -1.1597 2.5785 40 1 12.6805 0.6844 2.4440 41 1 11.7042 0.5533 3.9389 42 1 14.8360 2.0415 3.0180 43 1 9.1567 2.5800 3.1520 44 1 9.4841 2.4566 1.4009 45 1 6.6165 0.4442 2.5089 46 1 7.2323 1.9465 1.7784 47 1 6.5536 1.1965 -0.4502 48 1 5.1551 1.0562 0.6475 49 1 1.7810 -2.8890 1.0123 50 1 0.9301 -2.6311 -0.5297 51 1 2.6379 -3.1326 -0.5286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046014388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:39 Heat of formation + Delta-G solvation = 68.067527 kcal Electronic energy + Delta-G solvation = -31129.677665 eV Core-core repulsion = 27066.075266 eV Total energy + Delta-G solvation = -4063.602399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.78777 -41.13558 -39.80856 -38.05632 -35.71475 -34.44581 -33.94904 -33.46513 -32.24186 -31.05291 -29.58222 -29.18046 -27.64251 -27.05228 -26.00716 -25.19894 -24.29341 -22.21152 -21.80661 -21.14559 -20.95434 -19.94176 -18.94462 -18.68902 -17.87231 -17.21665 -17.14312 -16.87352 -16.46685 -16.12815 -15.90322 -15.86666 -15.31753 -15.08651 -14.82340 -14.67153 -14.28356 -14.15652 -14.04678 -13.87453 -13.62396 -13.53222 -13.43973 -13.31285 -13.06858 -13.00861 -12.83126 -12.73919 -12.58655 -12.48064 -12.28037 -11.99153 -11.95229 -11.81267 -11.59637 -11.47784 -11.30751 -10.94242 -10.78615 -10.37016 -9.85014 -9.62851 -9.28873 -8.87229 -7.70897 -5.22342 0.44095 1.07562 1.47457 1.50080 1.58240 1.73109 2.08772 2.25120 2.49463 2.81635 3.26085 3.33773 3.68133 3.70492 3.77176 3.86806 3.94173 4.05144 4.10943 4.22143 4.23942 4.29124 4.33437 4.38504 4.41771 4.54901 4.66106 4.71515 4.79553 4.79965 4.85515 4.89695 4.90114 4.93283 4.99415 5.01483 5.05534 5.09477 5.12503 5.14001 5.20941 5.43914 5.47237 5.57148 5.62318 5.82679 6.03317 6.07599 6.14307 6.32033 6.38331 6.81283 7.07127 7.12720 7.79749 8.43269 9.25256 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002127 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.571270 B =13162.074516 C =14115.410374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.030 3.970 3 N -0.366 5.366 4 H 0.461 0.539 5 N -0.267 5.267 6 C -0.036 4.036 7 C 0.597 3.403 8 O -0.564 6.564 9 N -0.601 5.601 10 C 0.121 3.879 11 C 0.047 3.953 12 N -0.530 5.530 13 C 0.089 3.911 14 H 0.044 0.956 15 C -0.115 4.115 16 C 0.137 3.863 17 N -0.624 5.624 18 C -0.236 4.236 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.947 5.947 22 Si 0.983 3.017 23 H -0.287 1.287 24 H -0.270 1.270 25 H -0.293 1.293 26 C 0.147 3.853 27 C 0.044 3.956 28 C 0.105 3.895 29 C -0.173 4.173 30 C -0.075 4.075 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.091 0.909 41 H -0.016 1.016 42 H 0.247 0.753 43 H 0.019 0.981 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.134 0.866 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.420 -5.360 -6.820 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 N -0.082 5.082 4 H 0.310 0.690 5 N -0.104 5.104 6 C -0.195 4.195 7 C 0.385 3.615 8 O -0.442 6.442 9 N -0.333 5.333 10 C -0.001 4.001 11 C -0.081 4.081 12 N -0.255 5.255 13 C -0.020 4.020 14 H 0.062 0.938 15 C -0.154 4.154 16 C 0.012 3.988 17 N -0.350 5.350 18 C -0.365 4.365 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.214 1.214 24 H -0.194 1.194 25 H -0.219 1.219 26 C 0.022 3.978 27 C -0.085 4.085 28 C -0.018 4.018 29 C -0.183 4.183 30 C -0.133 4.133 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.002 0.998 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.151 0.849 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.407 -4.804 -7.321 30.683 hybrid contribution 0.347 0.335 1.171 1.266 sum -29.060 -4.469 -6.150 30.038 Atomic orbital electron populations 1.20541 0.83347 1.05519 1.04753 1.21727 0.96827 0.85726 1.05372 1.43478 1.02319 1.10649 1.51771 0.69022 1.73284 1.02641 1.13979 1.20469 1.21716 0.94806 0.90364 1.12570 1.17303 0.82164 0.86082 0.75979 1.90716 1.86715 1.14239 1.52485 1.48118 1.05295 1.10773 1.69157 1.21759 0.82618 0.97451 0.98282 1.22459 1.00728 0.87908 0.97022 1.61971 1.08851 1.09766 1.44960 1.22405 0.92282 0.95348 0.91941 0.93828 1.22863 0.93613 0.98064 1.00863 1.22015 0.99354 0.82711 0.94728 1.44746 1.03878 1.03451 1.82923 1.19435 0.89738 0.85695 1.41676 0.90222 1.25661 0.97344 1.00325 1.02886 1.69891 1.08141 1.23695 1.57967 0.85020 0.77442 0.78705 0.77702 1.21360 1.19448 1.21904 1.21303 0.84748 0.94306 0.97471 1.22513 0.88805 1.00379 0.96765 1.22510 1.02571 0.79330 0.97379 1.20393 0.90295 0.98028 1.09593 1.20150 1.01874 0.88910 1.02335 0.88781 0.88738 0.88783 0.89994 0.88654 0.88358 0.95009 0.91282 0.90182 0.89094 0.99830 0.94264 0.96349 0.94896 0.95142 0.89164 0.90750 0.84937 0.91524 0.89332 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.14 71.24 0.72 0.48 16 2 C 0.03 0.36 7.23 41.40 0.30 0.66 16 3 N -0.37 -4.36 6.83 -47.92 -0.33 -4.69 16 4 H 0.46 1.82 8.96 -219.99 -1.97 -0.15 16 5 N -0.27 -5.22 8.73 -48.18 -0.42 -5.64 16 6 C -0.04 -0.86 6.83 42.46 0.29 -0.57 16 7 C 0.60 16.98 7.70 86.75 0.67 17.65 16 8 O -0.56 -18.45 14.54 -3.93 -0.06 -18.51 16 9 N -0.60 -15.90 3.01 -821.49 -2.47 -18.37 16 10 C 0.12 3.08 6.61 86.35 0.57 3.65 16 11 C 0.05 1.26 5.42 86.39 0.47 1.73 16 12 N -0.53 -16.02 4.45 -863.06 -3.84 -19.87 16 13 C 0.09 3.19 2.64 46.10 0.12 3.31 16 14 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.12 -4.46 5.12 31.99 0.16 -4.29 16 16 C 0.14 6.97 6.15 86.85 0.53 7.51 16 17 N -0.62 -33.26 3.39 -691.97 -2.35 -35.61 16 18 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -4.03 5.47 84.86 0.46 -3.57 16 21 N -0.95 -57.09 10.04 21.65 0.22 -56.87 16 22 Si 0.98 46.25 29.56 68.60 2.03 48.28 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 C 0.15 6.33 5.85 86.74 0.51 6.84 16 27 C 0.04 1.17 5.51 86.38 0.48 1.65 16 28 C 0.11 2.54 6.24 86.35 0.54 3.08 16 29 C -0.17 -3.32 6.24 -19.73 -0.12 -3.44 16 30 C -0.08 -1.27 9.67 71.23 0.69 -0.59 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.09 0.21 7.98 -2.39 -0.02 0.19 16 33 H 0.09 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 2.43 7.04 -2.39 -0.02 2.41 16 36 H 0.10 2.52 6.60 -2.39 -0.02 2.50 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 39 H 0.08 2.66 7.95 -2.39 -0.02 2.64 16 40 H 0.09 5.25 5.48 -2.39 -0.01 5.23 16 41 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 42 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.03 1.44 7.99 -2.39 -0.02 1.42 16 45 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.09 2.39 7.16 -2.39 -0.02 2.38 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.13 2.97 4.30 -13.55 -0.06 2.91 16 49 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 0.95 8.00 -2.39 -0.02 0.93 16 51 H 0.06 1.31 6.62 -2.39 -0.02 1.29 16 Total: -1.00 -75.39 392.73 -1.04 -76.43 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -1.07 Total: 13.46 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 7.25 Total: 21.39 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -9.20 Total: -141.05 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.06 Total: -18.51 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.39 -1.04 -76.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046014388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.502 kcal (2) G-P(sol) polarization free energy of solvation -75.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds