Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34668 * 126.59085 * 2 1 4 4 N 1.34133 * 108.01897 * 180.28470 * 3 2 1 5 5 C 1.30493 * 109.25673 * 359.72743 * 4 3 2 6 6 N 1.35044 * 108.70275 * 0.02562 * 5 4 3 7 7 C 1.46497 * 126.39848 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47187 * 265.02759 * 7 6 5 9 9 O 1.21279 * 120.00042 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99979 * 180.02562 * 8 7 6 11 11 C 1.47081 * 120.87930 * 179.97438 * 10 8 7 12 12 C 1.53238 * 108.51911 * 231.20498 * 11 10 8 13 13 N 1.46898 * 109.34398 * 306.17087 * 12 11 10 14 14 C 1.46898 * 111.00533 * 187.25735 * 13 12 11 15 15 H 1.09008 * 110.77539 * 295.98259 * 14 13 12 16 16 C 1.55156 * 110.72003 * 59.21548 * 14 13 12 17 17 C 1.54917 * 101.58009 * 153.86891 * 16 14 13 18 18 N 1.47424 * 104.83041 * 322.99164 * 17 16 14 19 19 C 1.36937 * 125.64762 * 204.09035 * 18 17 16 20 20 H 1.07997 * 120.00252 * 168.01794 * 19 18 17 21 21 C 1.38814 * 119.99793 * 348.01486 * 19 18 17 22 22 N 1.31613 * 120.00383 * 325.89001 * 21 19 18 23 23 Si 1.86801 * 119.99519 * 145.88006 * 21 19 18 24 24 H 1.48506 * 109.47041 * 60.00615 * 23 21 19 25 25 H 1.48501 * 109.47649 * 300.00477 * 23 21 19 26 26 H 1.48502 * 109.47127 * 179.97438 * 23 21 19 27 27 C 1.47023 * 108.70354 * 24.35794 * 18 17 16 28 28 C 1.46902 * 111.26648 * 63.10654 * 13 12 11 29 29 C 1.47077 * 120.88120 * 0.02562 * 10 8 7 30 30 H 1.08997 * 109.46893 * 270.16360 * 1 2 3 31 31 H 1.08996 * 109.46966 * 30.16962 * 1 2 3 32 32 H 1.09007 * 109.46974 * 150.16952 * 1 2 3 33 33 H 1.07997 * 125.99073 * 359.97253 * 3 2 1 34 34 H 1.08003 * 125.64904 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47233 * 145.02921 * 7 6 5 36 36 H 1.08997 * 109.47060 * 25.02903 * 7 6 5 37 37 H 1.09001 * 109.62356 * 111.49719 * 11 10 8 38 38 H 1.08995 * 109.79105 * 351.01267 * 11 10 8 39 39 H 1.09006 * 109.49046 * 186.21470 * 12 11 10 40 40 H 1.08996 * 109.51830 * 66.14915 * 12 11 10 41 41 H 1.09000 * 111.00276 * 35.79585 * 16 14 13 42 42 H 1.09000 * 111.00411 * 271.94172 * 16 14 13 43 43 H 1.08993 * 110.36505 * 204.15581 * 17 16 14 44 44 H 1.08997 * 110.36244 * 81.83153 * 17 16 14 45 45 H 0.97004 * 119.99897 * 354.26944 * 22 21 19 46 46 H 1.09001 * 109.88438 * 118.13196 * 27 18 17 47 47 H 1.08995 * 109.88049 * 239.29243 * 27 18 17 48 48 H 1.08996 * 109.49496 * 56.85861 * 28 13 12 49 49 H 1.09000 * 109.48911 * 176.93970 * 28 13 12 50 50 H 1.09005 * 109.62943 * 248.50302 * 29 10 8 51 51 H 1.08999 * 109.63156 * 8.89091 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0063 5 6 3.5969 -0.6508 -0.0044 6 7 2.3230 -1.0991 0.0027 7 6 1.8945 -2.4999 0.0065 8 6 1.6224 -2.9459 -1.4070 9 8 1.7713 -2.1698 -2.3270 10 7 1.2126 -4.2069 -1.6488 11 6 0.9409 -4.6624 -3.0206 12 6 -0.4492 -5.3065 -3.0534 13 7 -0.5250 -6.3527 -2.0250 14 6 -1.7786 -7.1103 -2.1361 15 1 -2.6374 -6.4674 -1.9428 16 6 -1.8952 -7.7770 -3.5323 17 6 -2.8146 -8.9852 -3.2242 18 7 -2.4002 -9.4430 -1.8855 19 6 -2.5714 -10.7063 -1.3857 20 1 -2.0673 -11.0004 -0.4769 21 6 -3.3928 -11.6089 -2.0470 22 7 -4.4680 -11.1825 -2.6749 23 14 -2.9719 -13.4289 -2.0459 24 1 -2.9416 -13.9291 -0.6480 25 1 -1.6406 -13.6296 -2.6725 26 1 -3.9995 -14.1751 -2.8158 27 6 -1.7786 -8.3167 -1.1736 28 6 -0.3688 -5.7880 -0.6779 29 6 1.0240 -5.1635 -0.5477 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8884 -0.5164 32 1 -0.3633 -0.8916 -0.5112 33 1 1.9865 2.1117 -0.0004 34 1 4.4819 -1.2697 -0.0079 35 1 0.9860 -2.6004 0.6004 36 1 2.6808 -3.1193 0.4379 37 1 1.6911 -5.3951 -3.3184 38 1 0.9673 -3.8133 -3.7035 39 1 -0.6224 -5.7480 -4.0348 40 1 -1.2067 -4.5478 -2.8570 41 1 -0.9203 -8.1089 -3.8894 42 1 -2.3634 -7.1026 -4.2494 43 1 -2.6618 -9.7752 -3.9594 44 1 -3.8590 -8.6737 -3.2123 45 1 -4.7324 -10.2517 -2.6067 46 1 -2.3549 -8.0800 -0.2792 47 1 -0.7544 -8.5707 -0.9006 48 1 -1.1272 -5.0224 -0.5142 49 1 -0.4838 -6.5788 0.0635 50 1 1.7822 -5.9445 -0.6073 51 1 1.1076 -4.6442 0.4070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046043445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = 76.859553 kcal Electronic energy + Delta-G solvation = -31006.070202 eV Core-core repulsion = 26942.849053 eV Total energy + Delta-G solvation = -4063.221149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.45838 -40.55251 -38.87023 -36.98787 -34.66991 -34.37237 -32.32845 -32.19154 -31.68642 -29.51488 -28.64419 -27.86900 -26.71692 -25.89216 -24.39338 -23.60390 -22.15841 -21.72676 -20.54718 -20.15686 -19.87945 -19.31112 -18.03934 -17.55324 -17.44086 -16.31861 -16.15670 -15.67303 -15.28789 -15.12231 -14.94087 -14.74634 -14.48894 -14.02266 -13.97670 -13.82628 -13.50589 -13.35278 -13.32988 -13.14022 -13.09442 -12.81336 -12.70842 -12.65747 -12.30500 -11.93824 -11.76566 -11.59675 -11.45297 -10.78569 -10.71689 -10.59762 -10.50338 -10.41619 -10.23876 -10.21072 -10.02563 -9.74712 -9.65618 -9.17478 -8.54654 -8.40246 -8.37642 -7.01057 -6.19796 -3.12545 1.61810 2.02393 2.20110 2.64385 2.95185 3.47788 3.53089 3.66840 3.70975 3.82601 4.09184 4.33974 4.38327 4.44808 4.49895 4.55912 4.62846 4.76922 4.81246 4.87536 5.02603 5.06671 5.13037 5.13794 5.17223 5.28596 5.31641 5.38956 5.46303 5.47460 5.51225 5.55131 5.58029 5.64579 5.75384 5.97386 6.00857 6.04997 6.21837 6.24870 6.42450 6.47060 6.48079 6.78504 6.87217 6.90730 6.97209 6.99380 7.17011 7.60049 7.74944 7.81449 8.43920 8.95912 9.77548 10.33177 11.14743 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.001922 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.325801 B =14563.138108 C =14673.576552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 C -0.029 4.029 4 N -0.491 5.491 5 C 0.189 3.811 6 N -0.444 5.444 7 C 0.086 3.914 8 C 0.497 3.503 9 O -0.522 6.522 10 N -0.607 5.607 11 C 0.119 3.881 12 C 0.042 3.958 13 N -0.524 5.524 14 C 0.072 3.928 15 H 0.044 0.956 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.600 5.600 19 C -0.343 4.343 20 H 0.067 0.933 21 C -0.022 4.022 22 N -0.907 5.907 23 Si 1.056 2.944 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.286 1.286 27 C 0.148 3.852 28 C 0.038 3.962 29 C 0.109 3.891 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.203 0.797 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.022 0.978 45 H 0.267 0.733 46 H 0.017 0.983 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 18.986 5.715 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.176 4.176 4 N -0.208 5.208 5 C -0.093 4.093 6 N -0.128 5.128 7 C -0.041 4.041 8 C 0.283 3.717 9 O -0.398 6.398 10 N -0.342 5.342 11 C -0.004 4.004 12 C -0.087 4.087 13 N -0.249 5.249 14 C -0.036 4.036 15 H 0.062 0.938 16 C -0.165 4.165 17 C 0.019 3.981 18 N -0.328 5.328 19 C -0.470 4.470 20 H 0.084 0.916 21 C -0.224 4.224 22 N -0.547 5.547 23 Si 0.886 3.114 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.212 1.212 27 C 0.022 3.978 28 C -0.090 4.090 29 C -0.014 4.014 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.186 0.814 34 H 0.220 0.780 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.147 17.884 4.599 22.103 hybrid contribution -0.991 1.316 0.859 1.858 sum 11.156 19.200 5.458 22.867 Atomic orbital electron populations 1.20211 0.87353 1.03523 1.02422 1.21223 0.94511 0.86687 1.10323 1.22011 0.88368 0.98364 1.08880 1.70262 1.22453 1.08723 1.19376 1.24877 0.86865 0.91871 1.05697 1.44901 1.07524 1.05199 1.55145 1.21713 1.04508 0.81609 0.96258 1.20676 0.77948 0.81966 0.91130 1.90789 1.51229 1.52350 1.45403 1.48201 1.66396 1.10660 1.08951 1.21773 0.96745 0.99479 0.82358 1.22471 0.95771 0.93078 0.97387 1.61989 1.36489 1.24066 1.02406 1.22679 0.88253 0.94410 0.98233 0.93760 1.22890 1.01155 0.97925 0.94502 1.21485 0.94648 0.93439 0.88488 1.44513 1.70495 1.07167 1.10606 1.19657 1.28031 0.86876 1.12448 0.91563 1.25660 0.92990 1.04746 0.99040 1.70802 1.19129 1.18356 1.46411 0.83655 0.75814 0.75948 0.76010 1.22021 1.22101 1.21156 1.21237 0.96978 0.86743 0.92864 1.22463 0.95243 0.98783 0.92559 1.21980 0.98449 0.92276 0.88722 0.90897 0.89808 0.92090 0.81443 0.78040 0.86261 0.85632 0.90245 0.88761 0.88871 0.94672 0.90570 0.92249 0.92779 0.96029 0.92183 0.96563 0.94493 0.94550 0.88606 0.89562 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.08 36.01 0.36 -0.19 16 2 C -0.01 -0.14 6.95 -81.60 -0.57 -0.70 16 3 C -0.03 -0.32 11.79 -17.81 -0.21 -0.53 16 4 N -0.49 -6.12 11.25 -14.67 -0.16 -6.28 16 5 C 0.19 1.89 12.56 -90.38 -1.13 0.75 16 6 N -0.44 -4.08 2.24 -115.28 -0.26 -4.34 16 7 C 0.09 0.54 4.64 -5.20 -0.02 0.52 16 8 C 0.50 4.76 7.78 -10.98 -0.09 4.67 16 9 O -0.52 -7.30 15.88 5.56 0.09 -7.21 16 10 N -0.61 -5.31 3.01 -172.49 -0.52 -5.83 16 11 C 0.12 1.17 6.59 -3.60 -0.02 1.14 16 12 C 0.04 0.45 5.46 -3.70 -0.02 0.43 16 13 N -0.52 -6.45 4.45 -224.17 -1.00 -7.44 16 14 C 0.07 1.13 2.64 -65.88 -0.17 0.96 16 15 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 16 C -0.13 -2.12 5.31 -24.58 -0.13 -2.25 16 17 C 0.15 3.26 5.34 -2.52 -0.01 3.25 16 18 N -0.60 -14.78 3.33 -170.07 -0.57 -15.34 16 19 C -0.34 -9.50 9.96 -15.06 -0.15 -9.65 16 20 H 0.07 1.83 8.02 -52.49 -0.42 1.41 16 21 C -0.02 -0.62 4.95 -17.43 -0.09 -0.71 16 22 N -0.91 -26.91 12.88 55.49 0.71 -26.19 16 23 Si 1.06 24.88 30.03 -169.99 -5.10 19.78 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.15 2.89 5.74 -3.06 -0.02 2.88 16 28 C 0.04 0.37 5.46 -3.72 -0.02 0.35 16 29 C 0.11 0.75 6.50 -3.62 -0.02 0.72 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 7.96 -51.93 -0.41 0.06 16 33 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.20 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.12 0.51 7.55 -51.93 -0.39 0.12 16 36 H 0.13 0.41 7.99 -51.93 -0.41 -0.01 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.00 7.07 -51.93 -0.37 0.64 16 39 H 0.09 1.00 6.75 -51.93 -0.35 0.65 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 43 H 0.05 1.34 7.83 -51.93 -0.41 0.93 16 44 H 0.02 0.52 7.03 -51.93 -0.37 0.15 16 45 H 0.27 7.96 6.46 -40.82 -0.26 7.70 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.73 7.78 -51.93 -0.40 0.32 16 48 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.97 6.88 -51.93 -0.36 0.61 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.31 6.02 -51.93 -0.31 0.00 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -36.17 400.79 -11.41 -47.59 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -8.32 Total: -2.40 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.32 Total: 1.64 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -1.79 Total: -65.43 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.21 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.17 -11.41 -47.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046043445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.445 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds