Wall clock time and date at job start Wed Apr 1 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34668 * 126.59085 * 2 1 4 4 N 1.34133 * 108.01897 * 180.28470 * 3 2 1 5 5 C 1.30493 * 109.25673 * 359.72743 * 4 3 2 6 6 N 1.35044 * 108.70275 * 0.02562 * 5 4 3 7 7 C 1.46497 * 126.39848 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47187 * 265.02759 * 7 6 5 9 9 O 1.21279 * 120.00042 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99979 * 180.02562 * 8 7 6 11 11 C 1.47081 * 120.87930 * 179.97438 * 10 8 7 12 12 C 1.53238 * 108.51911 * 231.20498 * 11 10 8 13 13 N 1.46898 * 109.34398 * 306.17087 * 12 11 10 14 14 C 1.46898 * 111.00533 * 187.25735 * 13 12 11 15 15 H 1.09008 * 110.77539 * 295.98259 * 14 13 12 16 16 C 1.55156 * 110.72003 * 59.21548 * 14 13 12 17 17 C 1.54917 * 101.58009 * 153.86891 * 16 14 13 18 18 N 1.47424 * 104.83041 * 322.99164 * 17 16 14 19 19 C 1.36937 * 125.64762 * 204.09035 * 18 17 16 20 20 H 1.07997 * 120.00252 * 168.01794 * 19 18 17 21 21 C 1.38814 * 119.99793 * 348.01486 * 19 18 17 22 22 N 1.31613 * 120.00383 * 325.89001 * 21 19 18 23 23 Si 1.86801 * 119.99519 * 145.88006 * 21 19 18 24 24 H 1.48506 * 109.47041 * 60.00615 * 23 21 19 25 25 H 1.48501 * 109.47649 * 300.00477 * 23 21 19 26 26 H 1.48502 * 109.47127 * 179.97438 * 23 21 19 27 27 C 1.47023 * 108.70354 * 24.35794 * 18 17 16 28 28 C 1.46902 * 111.26648 * 63.10654 * 13 12 11 29 29 C 1.47077 * 120.88120 * 0.02562 * 10 8 7 30 30 H 1.08997 * 109.46893 * 270.16360 * 1 2 3 31 31 H 1.08996 * 109.46966 * 30.16962 * 1 2 3 32 32 H 1.09007 * 109.46974 * 150.16952 * 1 2 3 33 33 H 1.07997 * 125.99073 * 359.97253 * 3 2 1 34 34 H 1.08003 * 125.64904 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47233 * 145.02921 * 7 6 5 36 36 H 1.08997 * 109.47060 * 25.02903 * 7 6 5 37 37 H 1.09001 * 109.62356 * 111.49719 * 11 10 8 38 38 H 1.08995 * 109.79105 * 351.01267 * 11 10 8 39 39 H 1.09006 * 109.49046 * 186.21470 * 12 11 10 40 40 H 1.08996 * 109.51830 * 66.14915 * 12 11 10 41 41 H 1.09000 * 111.00276 * 35.79585 * 16 14 13 42 42 H 1.09000 * 111.00411 * 271.94172 * 16 14 13 43 43 H 1.08993 * 110.36505 * 204.15581 * 17 16 14 44 44 H 1.08997 * 110.36244 * 81.83153 * 17 16 14 45 45 H 0.97004 * 119.99897 * 354.26944 * 22 21 19 46 46 H 1.09001 * 109.88438 * 118.13196 * 27 18 17 47 47 H 1.08995 * 109.88049 * 239.29243 * 27 18 17 48 48 H 1.08996 * 109.49496 * 56.85861 * 28 13 12 49 49 H 1.09000 * 109.48911 * 176.93970 * 28 13 12 50 50 H 1.09005 * 109.62943 * 248.50302 * 29 10 8 51 51 H 1.08999 * 109.63156 * 8.89091 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0063 5 6 3.5969 -0.6508 -0.0044 6 7 2.3230 -1.0991 0.0027 7 6 1.8945 -2.4999 0.0065 8 6 1.6224 -2.9459 -1.4070 9 8 1.7713 -2.1698 -2.3270 10 7 1.2126 -4.2069 -1.6488 11 6 0.9409 -4.6624 -3.0206 12 6 -0.4492 -5.3065 -3.0534 13 7 -0.5250 -6.3527 -2.0250 14 6 -1.7786 -7.1103 -2.1361 15 1 -2.6374 -6.4674 -1.9428 16 6 -1.8952 -7.7770 -3.5323 17 6 -2.8146 -8.9852 -3.2242 18 7 -2.4002 -9.4430 -1.8855 19 6 -2.5714 -10.7063 -1.3857 20 1 -2.0673 -11.0004 -0.4769 21 6 -3.3928 -11.6089 -2.0470 22 7 -4.4680 -11.1825 -2.6749 23 14 -2.9719 -13.4289 -2.0459 24 1 -2.9416 -13.9291 -0.6480 25 1 -1.6406 -13.6296 -2.6725 26 1 -3.9995 -14.1751 -2.8158 27 6 -1.7786 -8.3167 -1.1736 28 6 -0.3688 -5.7880 -0.6779 29 6 1.0240 -5.1635 -0.5477 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8884 -0.5164 32 1 -0.3633 -0.8916 -0.5112 33 1 1.9865 2.1117 -0.0004 34 1 4.4819 -1.2697 -0.0079 35 1 0.9860 -2.6004 0.6004 36 1 2.6808 -3.1193 0.4379 37 1 1.6911 -5.3951 -3.3184 38 1 0.9673 -3.8133 -3.7035 39 1 -0.6224 -5.7480 -4.0348 40 1 -1.2067 -4.5478 -2.8570 41 1 -0.9203 -8.1089 -3.8894 42 1 -2.3634 -7.1026 -4.2494 43 1 -2.6618 -9.7752 -3.9594 44 1 -3.8590 -8.6737 -3.2123 45 1 -4.7324 -10.2517 -2.6067 46 1 -2.3549 -8.0800 -0.2792 47 1 -0.7544 -8.5707 -0.9006 48 1 -1.1272 -5.0224 -0.5142 49 1 -0.4838 -6.5788 0.0635 50 1 1.7822 -5.9445 -0.6073 51 1 1.1076 -4.6442 0.4070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046043445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:50 Heat of formation + Delta-G solvation = 53.483327 kcal Electronic energy + Delta-G solvation = -31007.083871 eV Core-core repulsion = 26942.849053 eV Total energy + Delta-G solvation = -4064.234818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.13575 -41.34619 -40.02928 -38.25091 -35.82609 -35.11384 -33.97338 -32.89983 -32.45721 -31.08825 -29.77980 -28.89316 -27.35127 -27.09328 -25.91242 -24.68698 -22.98379 -22.43039 -21.94586 -21.42194 -20.98096 -20.02274 -19.56211 -18.72455 -18.11541 -17.30310 -16.87314 -16.67149 -16.47102 -16.02901 -15.97051 -15.72518 -15.44570 -15.34159 -15.04500 -14.93721 -14.74862 -14.62252 -14.34796 -13.97946 -13.83745 -13.65141 -13.51653 -13.39872 -13.25300 -13.20735 -12.72675 -12.67096 -12.58494 -12.44548 -12.33273 -11.96861 -11.89956 -11.82383 -11.68816 -11.62982 -11.43513 -10.96283 -10.47035 -10.45486 -9.95292 -9.35620 -9.25018 -9.03367 -8.39161 -5.27463 0.93479 1.35036 1.58115 1.59835 1.65785 1.85074 1.99999 2.20193 2.58996 2.74768 3.13034 3.23697 3.54579 3.59332 3.69666 3.74967 3.81980 3.86228 3.91639 3.97078 4.02591 4.15092 4.18302 4.22408 4.24891 4.33939 4.41143 4.46599 4.50501 4.57169 4.68409 4.69224 4.78921 4.81961 4.83447 4.87038 4.88852 4.98224 4.99785 5.04179 5.09016 5.28333 5.29712 5.37982 5.67794 5.79142 5.93905 6.02842 6.15320 6.29011 6.29391 6.88072 6.91539 7.09953 7.70886 8.29783 8.95295 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.001922 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.325801 B =14563.138108 C =14673.576552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.059 4.059 4 N -0.533 5.533 5 C 0.183 3.817 6 N -0.445 5.445 7 C 0.086 3.914 8 C 0.498 3.502 9 O -0.573 6.573 10 N -0.604 5.604 11 C 0.124 3.876 12 C 0.047 3.953 13 N -0.528 5.528 14 C 0.092 3.908 15 H 0.045 0.955 16 C -0.108 4.108 17 C 0.146 3.854 18 N -0.625 5.625 19 C -0.350 4.350 20 H 0.062 0.938 21 C -0.076 4.076 22 N -0.936 5.936 23 Si 1.109 2.891 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.293 1.293 27 C 0.148 3.852 28 C 0.034 3.966 29 C 0.113 3.887 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.176 0.824 34 H 0.231 0.769 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.020 0.980 44 H 0.001 0.999 45 H 0.253 0.747 46 H 0.013 0.987 47 H 0.041 0.959 48 H 0.040 0.960 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.877 19.142 7.179 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 C -0.205 4.205 4 N -0.251 5.251 5 C -0.099 4.099 6 N -0.129 5.129 7 C -0.039 4.039 8 C 0.286 3.714 9 O -0.452 6.452 10 N -0.338 5.338 11 C 0.001 3.999 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.017 4.017 15 H 0.063 0.937 16 C -0.147 4.147 17 C 0.020 3.980 18 N -0.352 5.352 19 C -0.479 4.479 20 H 0.080 0.920 21 C -0.273 4.273 22 N -0.578 5.578 23 Si 0.933 3.067 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.219 1.219 27 C 0.023 3.977 28 C -0.095 4.095 29 C -0.009 4.009 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.193 0.807 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.039 0.961 44 H 0.019 0.981 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.111 0.889 50 H 0.110 0.890 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.552 18.049 6.102 23.381 hybrid contribution -1.413 1.300 0.433 1.968 sum 12.139 19.349 6.535 23.758 Atomic orbital electron populations 1.20265 0.85606 1.03518 1.03690 1.21629 0.95670 0.86746 1.09221 1.22333 0.88516 0.99489 1.10201 1.70205 1.23471 1.10420 1.20984 1.25458 0.88135 0.91659 1.04694 1.45055 1.07140 1.06192 1.54473 1.22044 1.07174 0.80462 0.94266 1.21216 0.76763 0.81414 0.91995 1.90780 1.53475 1.53664 1.47263 1.48256 1.65742 1.10865 1.08914 1.21619 0.96103 0.98980 0.83237 1.22441 0.96342 0.92464 0.96867 1.61937 1.34017 1.25006 1.04364 1.22336 0.90139 0.93371 0.95838 0.93677 1.22733 0.99978 0.95936 0.96035 1.21415 0.94895 0.94585 0.87060 1.44814 1.70507 1.07844 1.12047 1.19917 1.27016 0.88640 1.12289 0.92000 1.27019 0.92650 1.08635 0.98988 1.70922 1.20751 1.17528 1.48572 0.82944 0.75582 0.71178 0.76953 1.19877 1.20863 1.21942 1.21336 0.96266 0.86855 0.93275 1.22593 0.97276 0.98876 0.90722 1.22133 0.96565 0.92381 0.89786 0.88878 0.89405 0.92473 0.80674 0.75287 0.83506 0.81769 0.89966 0.89800 0.88910 0.94901 0.90285 0.89546 0.96123 0.98085 0.93734 0.96952 0.94100 0.94128 0.88908 0.88970 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.08 71.24 0.72 -0.17 16 2 C -0.02 -0.33 6.95 40.95 0.28 -0.05 16 3 C -0.06 -1.29 11.79 83.52 0.98 -0.31 16 4 N -0.53 -13.08 11.25 -200.31 -2.25 -15.33 16 5 C 0.18 3.35 12.56 180.26 2.26 5.61 16 6 N -0.45 -7.08 2.24 -518.62 -1.16 -8.25 16 7 C 0.09 0.72 4.64 85.63 0.40 1.12 16 8 C 0.50 8.08 7.78 87.66 0.68 8.76 16 9 O -0.57 -15.24 15.88 -3.03 -0.05 -15.28 16 10 N -0.60 -8.59 3.01 -818.02 -2.46 -11.05 16 11 C 0.12 2.16 6.59 86.35 0.57 2.73 16 12 C 0.05 0.91 5.46 86.38 0.47 1.38 16 13 N -0.53 -11.63 4.45 -863.15 -3.84 -15.48 16 14 C 0.09 2.73 2.64 46.11 0.12 2.85 16 15 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 16 C -0.11 -3.53 5.31 31.99 0.17 -3.36 16 17 C 0.15 6.72 5.34 86.86 0.46 7.18 16 18 N -0.62 -31.09 3.33 -691.98 -2.30 -33.39 16 19 C -0.35 -19.63 9.96 84.03 0.84 -18.79 16 20 H 0.06 3.44 8.02 -2.91 -0.02 3.41 16 21 C -0.08 -4.35 4.95 84.86 0.42 -3.93 16 22 N -0.94 -57.12 12.88 21.65 0.28 -56.84 16 23 Si 1.11 50.55 30.03 68.60 2.06 52.61 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 27 C 0.15 5.66 5.74 86.73 0.50 6.16 16 28 C 0.03 0.54 5.46 86.37 0.47 1.01 16 29 C 0.11 1.06 6.50 86.34 0.56 1.62 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.75 7.96 -2.38 -0.02 0.73 16 33 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.23 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.15 0.47 7.55 -2.39 -0.02 0.45 16 36 H 0.16 0.12 7.99 -2.39 -0.02 0.10 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.70 7.07 -2.39 -0.02 1.68 16 39 H 0.09 1.79 6.75 -2.38 -0.02 1.78 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.09 2.37 7.93 -2.39 -0.02 2.35 16 43 H 0.02 1.05 7.83 -2.39 -0.02 1.04 16 44 H 0.00 0.07 7.03 -2.39 -0.02 0.05 16 45 H 0.25 15.71 6.46 -92.71 -0.60 15.11 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.04 1.54 7.78 -2.39 -0.02 1.52 16 48 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.09 1.58 6.88 -2.39 -0.02 1.56 16 50 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.13 0.17 6.02 -2.39 -0.01 0.16 16 Total: -1.00 -82.64 400.79 1.27 -81.38 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.08 Total: 9.83 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 9.92 Total: 11.81 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -11.75 Total: -140.34 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.05 Total: -15.28 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.06 Total: 52.61 kcal Total: -82.64 1.27 -81.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046043445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.861 kcal (2) G-P(sol) polarization free energy of solvation -82.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds