Wall clock time and date at job start Wed Apr 1 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34667 * 126.59061 * 2 1 4 4 N 1.34128 * 108.02015 * 179.97438 * 3 2 1 5 5 C 1.30504 * 109.25358 * 359.73287 * 4 3 2 6 6 N 1.35044 * 108.70105 * 0.43373 * 5 4 3 7 7 C 1.46496 * 126.39625 * 179.82843 * 6 5 4 8 8 C 1.50700 * 109.47092 * 264.68998 * 7 6 5 9 9 O 1.21279 * 120.00266 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.47081 * 120.88300 * 180.02562 * 10 8 7 12 12 C 1.53234 * 108.52059 * 231.20500 * 11 10 8 13 13 N 1.46895 * 109.34290 * 306.16710 * 12 11 10 14 14 C 1.46903 * 111.00149 * 187.25030 * 13 12 11 15 15 H 1.08995 * 110.64225 * 298.31528 * 14 13 12 16 16 C 1.55154 * 110.71882 * 174.97808 * 14 13 12 17 17 C 1.54910 * 101.58031 * 206.13764 * 16 14 13 18 18 N 1.47426 * 104.83209 * 37.01037 * 17 16 14 19 19 C 1.36932 * 125.64638 * 155.89300 * 18 17 16 20 20 H 1.08001 * 119.99867 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00333 * 359.97290 * 19 18 17 22 22 N 1.31623 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47007 * 90.00170 * 23 21 19 25 25 H 1.48501 * 109.46993 * 210.00274 * 23 21 19 26 26 H 1.48499 * 109.47317 * 330.00050 * 23 21 19 27 27 C 1.47019 * 108.70209 * 335.87354 * 18 17 16 28 28 C 1.46908 * 111.26676 * 63.10905 * 13 12 11 29 29 C 1.47081 * 120.88167 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.46820 * 270.04521 * 1 2 3 31 31 H 1.09000 * 109.46806 * 30.03910 * 1 2 3 32 32 H 1.08996 * 109.47011 * 150.04149 * 1 2 3 33 33 H 1.07999 * 125.99277 * 359.97118 * 3 2 1 34 34 H 1.07999 * 125.64669 * 180.29360 * 5 4 3 35 35 H 1.09000 * 109.47117 * 144.69784 * 7 6 5 36 36 H 1.08995 * 109.47040 * 24.69406 * 7 6 5 37 37 H 1.08998 * 109.62655 * 111.49505 * 11 10 8 38 38 H 1.08999 * 109.62739 * 350.91935 * 11 10 8 39 39 H 1.08998 * 109.49537 * 186.20526 * 12 11 10 40 40 H 1.09004 * 109.49485 * 66.13208 * 12 11 10 41 41 H 1.09002 * 111.00945 * 88.06571 * 16 14 13 42 42 H 1.08999 * 111.00353 * 324.21109 * 16 14 13 43 43 H 1.08998 * 110.36709 * 278.17139 * 17 16 14 44 44 H 1.09005 * 110.36466 * 155.84673 * 17 16 14 45 45 H 0.96997 * 120.00161 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.88389 * 120.48020 * 27 18 17 47 47 H 1.09004 * 109.87600 * 241.48978 * 27 18 17 48 48 H 1.09000 * 109.49706 * 56.85132 * 28 13 12 49 49 H 1.09000 * 109.49136 * 176.93769 * 28 13 12 50 50 H 1.08994 * 109.63092 * 248.50216 * 29 10 8 51 51 H 1.09000 * 109.62848 * 9.08777 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5968 -0.6508 0.0067 6 7 2.3229 -1.0991 0.0005 7 6 1.8944 -2.5000 0.0007 8 6 1.6294 -2.9443 -1.4147 9 8 1.7838 -2.1676 -2.3332 10 7 1.2208 -4.2050 -1.6599 11 6 0.9571 -4.6595 -3.0337 12 6 -0.4328 -5.3033 -3.0750 13 7 -0.5148 -6.3503 -2.0480 14 6 -1.7680 -7.1075 -2.1670 15 1 -2.6275 -6.4539 -2.0184 16 6 -1.7924 -8.2899 -1.1627 17 6 -2.7491 -9.2806 -1.8719 18 7 -2.4400 -9.1422 -3.3067 19 6 -2.6651 -10.0923 -4.2668 20 1 -2.4026 -9.8933 -5.2954 21 6 -3.2307 -11.3111 -3.9182 22 7 -3.5510 -11.5534 -2.6647 23 14 -3.5384 -12.6068 -5.2281 24 1 -2.3429 -13.4789 -5.3522 25 1 -4.7137 -13.4294 -4.8442 26 1 -3.8034 -11.9420 -6.5293 27 6 -1.8504 -7.8151 -3.5360 28 6 -0.3665 -5.7867 -0.6995 29 6 1.0267 -5.1629 -0.5608 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8903 -0.5132 33 1 1.9865 2.1117 -0.0004 34 1 4.4819 -1.2697 0.0131 35 1 0.9829 -2.6010 0.5898 36 1 2.6785 -3.1197 0.4354 37 1 1.7088 -5.3920 -3.3276 38 1 0.9866 -3.8077 -3.7131 39 1 -0.6005 -5.7439 -4.0578 40 1 -1.1911 -4.5443 -2.8822 41 1 -2.1973 -7.9769 -0.2003 42 1 -0.7990 -8.7228 -1.0447 43 1 -3.7871 -9.0091 -1.6796 44 1 -2.5548 -10.3001 -1.5386 45 1 -3.9459 -12.4052 -2.4210 46 1 -0.8515 -7.9213 -3.9592 47 1 -2.4814 -7.2415 -4.2150 48 1 -1.1256 -5.0210 -0.5396 49 1 -0.4859 -6.5780 0.0406 50 1 1.7850 -5.9438 -0.6174 51 1 1.1021 -4.6440 0.3948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046043446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:57 Heat of formation + Delta-G solvation = 81.708005 kcal Electronic energy + Delta-G solvation = -30973.760598 eV Core-core repulsion = 26910.749694 eV Total energy + Delta-G solvation = -4063.010904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43503 -40.49260 -38.74719 -36.80733 -34.56361 -34.29863 -32.28496 -32.06978 -31.59227 -29.38380 -28.86272 -27.47671 -26.69588 -26.05740 -24.25522 -23.71102 -22.08930 -21.70149 -20.47519 -20.09760 -19.69547 -19.25238 -17.98465 -17.43146 -16.94834 -16.21143 -16.10826 -15.64666 -15.24611 -15.00355 -14.76053 -14.62503 -14.57772 -14.34020 -13.92526 -13.89226 -13.43678 -13.31595 -13.24345 -13.08094 -12.74456 -12.67587 -12.54408 -12.49439 -11.94913 -11.81430 -11.67745 -11.48066 -11.43917 -10.99981 -10.85241 -10.64257 -10.34685 -10.23553 -10.19116 -10.11396 -9.89326 -9.71367 -9.63000 -9.10133 -8.69121 -8.52616 -8.29428 -6.87628 -5.69549 -3.11078 1.64486 2.06848 2.22751 2.68764 2.97233 3.37330 3.42367 3.44165 3.77055 3.86780 4.11778 4.36380 4.40583 4.45949 4.47020 4.55969 4.68031 4.83023 4.83902 4.96110 5.10939 5.14655 5.18141 5.19241 5.36480 5.40294 5.44049 5.47128 5.48618 5.53262 5.57875 5.62079 5.74751 5.80050 5.85982 6.06000 6.07209 6.24151 6.44952 6.47362 6.50065 6.55886 6.61145 6.82279 6.95263 7.05689 7.27749 7.45256 7.58727 7.64840 7.80295 7.83485 8.31606 9.17914 9.78820 10.43010 11.34557 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033213 B = 0.001899 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.847703 B =14744.858968 C =14949.662725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 C -0.029 4.029 4 N -0.491 5.491 5 C 0.188 3.812 6 N -0.443 5.443 7 C 0.086 3.914 8 C 0.497 3.503 9 O -0.522 6.522 10 N -0.607 5.607 11 C 0.119 3.881 12 C 0.040 3.960 13 N -0.525 5.525 14 C 0.072 3.928 15 H 0.043 0.957 16 C -0.134 4.134 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.146 3.854 28 C 0.040 3.960 29 C 0.108 3.892 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.203 0.797 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.010 0.990 44 H 0.108 0.892 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.035 0.965 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 18.169 10.223 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C -0.176 4.176 4 N -0.208 5.208 5 C -0.093 4.093 6 N -0.127 5.127 7 C -0.041 4.041 8 C 0.282 3.718 9 O -0.398 6.398 10 N -0.342 5.342 11 C -0.004 4.004 12 C -0.089 4.089 13 N -0.250 5.250 14 C -0.036 4.036 15 H 0.061 0.939 16 C -0.173 4.173 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.020 3.980 28 C -0.089 4.089 29 C -0.015 4.015 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.185 0.815 34 H 0.220 0.780 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.588 18.445 9.604 23.336 hybrid contribution -1.645 -0.803 -0.552 1.912 sum 8.943 17.642 9.052 21.752 Atomic orbital electron populations 1.20211 0.87351 1.03553 1.02397 1.21223 0.94516 0.86688 1.10333 1.22007 0.88373 0.98361 1.08893 1.70263 1.22448 1.08731 1.19392 1.24877 0.86862 0.91870 1.05728 1.44891 1.07518 1.05222 1.55103 1.21709 1.04470 0.81580 0.96306 1.20661 0.78002 0.82013 0.91099 1.90790 1.51123 1.52307 1.45566 1.48210 1.66395 1.10607 1.08964 1.21796 0.96938 0.99488 0.82139 1.22492 0.95607 0.93140 0.97626 1.62015 1.36899 1.23969 1.02128 1.22707 0.87907 0.94192 0.98792 0.93924 1.23094 1.01778 0.96085 0.96303 1.21930 0.93046 0.99551 0.82741 1.44423 1.72311 1.11372 1.04778 1.19067 1.34095 0.92953 0.88784 0.90495 1.24789 1.01233 0.98022 0.96686 1.69782 1.48531 1.23696 1.15175 0.86064 0.77459 0.81502 0.80420 1.21554 1.21660 1.20753 1.21222 0.96615 0.87485 0.92701 1.22448 0.95101 0.98636 0.92680 1.22003 0.98514 0.92238 0.88712 0.90909 0.89820 0.92058 0.81456 0.78044 0.86299 0.85668 0.90197 0.88805 0.88731 0.94715 0.92823 0.91062 0.97193 0.87390 0.93729 0.94724 0.96618 0.94695 0.88716 0.89600 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.08 36.01 0.36 -0.19 16 2 C -0.01 -0.14 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.33 11.79 -17.81 -0.21 -0.54 16 4 N -0.49 -6.16 11.25 -14.67 -0.17 -6.33 16 5 C 0.19 1.90 12.56 -90.37 -1.13 0.77 16 6 N -0.44 -4.11 2.24 -115.28 -0.26 -4.37 16 7 C 0.09 0.55 4.64 -5.20 -0.02 0.52 16 8 C 0.50 4.87 7.78 -10.99 -0.09 4.79 16 9 O -0.52 -7.48 15.88 5.56 0.09 -7.39 16 10 N -0.61 -5.49 3.01 -172.45 -0.52 -6.01 16 11 C 0.12 1.25 6.60 -3.60 -0.02 1.22 16 12 C 0.04 0.47 5.45 -3.71 -0.02 0.45 16 13 N -0.53 -6.69 4.45 -224.13 -1.00 -7.68 16 14 C 0.07 1.16 2.65 -65.88 -0.17 0.99 16 15 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 16 C -0.13 -2.32 5.38 -24.58 -0.13 -2.45 16 17 C 0.15 3.55 5.89 -2.53 -0.01 3.54 16 18 N -0.60 -15.04 3.39 -170.07 -0.58 -15.61 16 19 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 23 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.15 2.93 5.70 -3.07 -0.02 2.91 16 28 C 0.04 0.38 5.47 -3.68 -0.02 0.36 16 29 C 0.11 0.74 6.51 -3.58 -0.02 0.72 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 33 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 0.51 7.54 -51.93 -0.39 0.11 16 36 H 0.13 0.41 7.99 -51.93 -0.41 -0.01 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.07 7.06 -51.93 -0.37 0.70 16 39 H 0.09 1.18 6.78 -51.93 -0.35 0.82 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.70 7.70 -51.93 -0.40 0.30 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.09 0.87 6.80 -51.93 -0.35 0.52 16 50 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.08 0.29 6.02 -51.93 -0.31 -0.02 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -35.21 399.71 -11.54 -46.75 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.34 Total: -2.07 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.34 Total: 5.75 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -1.96 Total: -65.78 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.21 -11.54 -46.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046043446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.460 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds