Wall clock time and date at job start Wed Apr 1 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39672 * 127.31627 * 2 1 4 4 N 1.30864 * 107.86119 * 180.02562 * 3 2 1 5 5 N 1.28450 * 110.92536 * 359.71423 * 4 3 2 6 6 C 1.46493 * 125.19043 * 180.31487 * 5 4 3 7 7 C 1.36600 * 109.61754 * 0.46380 * 5 4 3 8 8 C 1.47164 * 126.88469 * 179.81563 * 7 5 4 9 9 O 1.21623 * 120.00312 * 90.26370 * 8 7 5 10 10 N 1.34778 * 119.99638 * 270.26886 * 8 7 5 11 11 C 1.47074 * 120.88412 * 4.98082 * 10 8 7 12 12 C 1.53696 * 108.27962 * 128.75776 * 11 10 8 13 13 N 1.46897 * 109.25601 * 54.07887 * 12 11 10 14 14 C 1.46900 * 110.99528 * 172.61223 * 13 12 11 15 15 H 1.08999 * 110.88610 * 175.42112 * 14 13 12 16 16 C 1.55164 * 111.00425 * 299.29839 * 14 13 12 17 17 C 1.54326 * 102.93891 * 153.57965 * 16 14 13 18 18 N 1.47022 * 107.27566 * 337.80854 * 17 16 14 19 19 C 1.36928 * 125.65278 * 178.98605 * 18 17 16 20 20 H 1.08003 * 120.00634 * 179.97438 * 19 18 17 21 21 C 1.38822 * 119.99908 * 359.97438 * 19 18 17 22 22 N 1.31610 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47102 * 120.00112 * 23 21 19 26 26 H 1.48498 * 109.47129 * 239.99819 * 23 21 19 27 27 C 1.47432 * 108.70035 * 358.94422 * 18 17 16 28 28 C 1.46896 * 111.27005 * 296.75758 * 13 12 11 29 29 C 1.47077 * 120.87867 * 185.25686 * 10 8 7 30 30 H 1.09004 * 109.47024 * 269.99692 * 1 2 3 31 31 H 1.08998 * 109.47590 * 29.99912 * 1 2 3 32 32 H 1.09004 * 109.47347 * 149.99936 * 1 2 3 33 33 H 1.07999 * 126.06992 * 359.96899 * 3 2 1 34 34 H 1.08998 * 109.47567 * 275.12385 * 6 5 4 35 35 H 1.08996 * 109.47370 * 35.12568 * 6 5 4 36 36 H 1.09009 * 109.46869 * 155.12202 * 6 5 4 37 37 H 1.09010 * 109.62856 * 248.52109 * 11 10 8 38 38 H 1.09002 * 109.63256 * 9.10334 * 11 10 8 39 39 H 1.09005 * 109.64116 * 294.07703 * 12 11 10 40 40 H 1.09001 * 109.42221 * 173.94751 * 12 11 10 41 41 H 1.08998 * 110.72068 * 271.93897 * 16 14 13 42 42 H 1.08995 * 110.71704 * 35.22015 * 16 14 13 43 43 H 1.09000 * 109.88328 * 97.22696 * 17 16 14 44 44 H 1.08997 * 109.88070 * 218.39157 * 17 16 14 45 45 H 0.96998 * 120.00159 * 180.02562 * 22 21 19 46 46 H 1.09007 * 110.36370 * 265.29094 * 27 18 17 47 47 H 1.08997 * 110.36560 * 142.97055 * 27 18 17 48 48 H 1.09003 * 109.49429 * 303.14773 * 28 13 12 49 49 H 1.09000 * 109.49194 * 183.06828 * 28 13 12 50 50 H 1.09002 * 109.63084 * 350.89808 * 29 10 8 51 51 H 1.09000 * 109.63008 * 111.47827 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5876 0.6750 -0.0006 5 7 3.6206 -0.6091 0.0051 6 6 4.8391 -1.4223 0.0128 7 6 2.3461 -1.1006 -0.0006 8 6 1.9455 -2.5167 -0.0008 9 8 1.7701 -3.0993 1.0523 10 7 1.7731 -3.1680 -1.1682 11 6 2.0844 -2.5163 -2.4494 12 6 3.0017 -3.4501 -3.2549 13 7 2.3693 -4.7711 -3.3681 14 6 3.1278 -5.6417 -4.2762 15 1 2.7036 -6.6456 -4.2967 16 6 3.1919 -5.0358 -5.7032 17 6 4.4936 -5.6358 -6.2752 18 7 5.3320 -6.0288 -5.1332 19 6 6.5642 -6.6204 -5.2138 20 1 7.1030 -6.8712 -4.3120 21 6 7.1209 -6.8980 -6.4549 22 7 6.4641 -6.5929 -7.5538 23 14 8.8022 -7.7044 -6.5650 24 1 9.3272 -7.9433 -5.1966 25 1 8.6843 -8.9987 -7.2834 26 1 9.7320 -6.8119 -7.3025 27 6 4.6266 -5.6793 -3.8866 28 6 2.2072 -5.3990 -2.0500 29 6 1.2630 -4.5472 -1.1948 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 2.0449 2.1457 -0.0005 34 1 5.1959 -1.5521 -1.0089 35 1 5.6058 -0.9224 0.6046 36 1 4.6222 -2.3977 0.4486 37 1 1.1623 -2.3373 -3.0026 38 1 2.5936 -1.5704 -2.2649 39 1 3.9613 -3.5484 -2.7472 40 1 3.1574 -3.0348 -4.2506 41 1 2.3309 -5.3486 -6.2940 42 1 3.2557 -3.9487 -5.6580 43 1 4.2627 -6.5102 -6.8837 44 1 5.0127 -4.8896 -6.8767 45 1 6.8529 -6.7872 -8.4210 46 1 4.9501 -4.7018 -3.5289 47 1 4.8019 -6.4397 -3.1256 48 1 3.1778 -5.4702 -1.5591 49 1 1.7867 -6.3972 -2.1719 50 1 1.2289 -4.9447 -0.1804 51 1 0.2637 -4.5597 -1.6298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046053278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:00 Heat of formation + Delta-G solvation = 98.364057 kcal Electronic energy + Delta-G solvation = -32021.349654 eV Core-core repulsion = 27959.061011 eV Total energy + Delta-G solvation = -4062.288643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.79269 -40.27467 -38.76934 -36.65002 -34.33938 -34.23688 -32.47309 -31.85526 -31.21820 -29.38667 -28.84846 -27.84996 -26.41284 -25.96886 -24.40700 -23.97022 -23.07617 -21.31691 -21.05297 -20.10105 -19.72622 -18.81607 -17.74473 -17.02781 -16.95572 -16.19362 -15.97062 -15.63679 -15.32289 -15.00056 -14.62858 -14.54479 -14.42830 -14.01246 -13.80906 -13.64924 -13.57374 -13.12459 -12.97903 -12.85944 -12.72410 -12.69815 -12.55579 -12.40226 -12.11366 -11.87997 -11.57876 -11.33295 -11.16042 -10.91458 -10.88140 -10.86100 -10.69935 -10.35144 -10.13946 -10.09335 -9.81417 -9.75737 -9.37350 -9.02196 -8.90576 -8.67028 -8.15522 -6.88102 -5.77550 -3.11527 1.43103 1.81886 2.41034 2.46768 2.77213 3.34873 3.40551 3.42923 3.87173 4.04305 4.22763 4.44762 4.67348 4.79522 4.81366 4.82399 4.85849 4.98851 5.07502 5.11111 5.12532 5.19718 5.29066 5.36833 5.39197 5.41783 5.43426 5.51569 5.55626 5.65387 5.69860 5.70984 5.71712 5.80647 5.85424 5.95125 6.13749 6.21325 6.31443 6.34415 6.42813 6.48802 6.55881 6.61368 6.98642 7.14976 7.23889 7.49731 7.56525 7.72953 7.76779 7.83043 8.19311 9.15592 9.75627 10.40974 11.33867 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002664 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.149400 B =10506.621508 C =11149.225484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.161 4.161 3 C 0.005 3.995 4 N -0.282 5.282 5 N -0.272 5.272 6 C 0.085 3.915 7 C -0.026 4.026 8 C 0.594 3.406 9 O -0.527 6.527 10 N -0.597 5.597 11 C 0.115 3.885 12 C 0.034 3.966 13 N -0.524 5.524 14 C 0.069 3.931 15 H 0.090 0.910 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.108 3.892 28 C 0.040 3.960 29 C 0.117 3.883 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.019 0.981 47 H 0.033 0.967 48 H 0.041 0.959 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 11.964 12.803 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.172 4.172 3 C -0.172 4.172 4 N -0.112 5.112 5 N -0.060 5.060 6 C -0.055 4.055 7 C -0.155 4.155 8 C 0.378 3.622 9 O -0.402 6.402 10 N -0.330 5.330 11 C -0.008 4.008 12 C -0.094 4.094 13 N -0.248 5.248 14 C -0.040 4.040 15 H 0.108 0.892 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.020 4.020 28 C -0.089 4.089 29 C -0.005 4.005 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.203 0.797 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.114 0.886 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.978 11.877 13.007 21.300 hybrid contribution 1.093 -0.780 0.095 1.346 sum -10.885 11.097 13.102 20.329 Atomic orbital electron populations 1.20109 0.88387 1.02626 1.02294 1.20660 0.96843 0.90626 1.09074 1.23440 0.87700 0.99873 1.06223 1.73167 1.24437 0.93157 1.20474 1.45564 1.05454 1.03736 1.51242 1.22227 0.83766 0.94536 1.04993 1.21243 0.86225 0.94559 1.13436 1.17085 0.77613 0.83715 0.83754 1.90834 1.51331 1.67081 1.30927 1.48167 1.63984 1.14984 1.05871 1.22016 1.00286 0.95418 0.83073 1.22667 0.95432 0.90268 1.01072 1.62158 1.49945 1.02727 1.09954 1.22998 0.92307 0.95925 0.92731 0.89172 1.22990 1.00136 0.99678 0.94569 1.21183 0.86293 0.98015 0.89335 1.44385 1.17825 1.71090 0.99580 1.19076 0.92090 1.32036 0.92651 0.90592 1.24802 0.98820 1.01364 0.95342 1.69965 1.37536 1.52489 0.96755 0.86055 0.83548 0.78766 0.77453 1.20552 1.21664 1.21704 1.22153 0.91529 0.97242 0.91067 1.22457 0.98770 0.98120 0.89504 1.21843 0.97561 0.79693 1.01373 0.91260 0.90910 0.91953 0.79742 0.89188 0.88151 0.88942 0.90013 0.90092 0.93581 0.88573 0.91736 0.92152 0.93464 0.93937 0.93741 0.96389 0.94871 0.94090 0.89192 0.88595 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.28 36.01 0.37 -0.25 16 2 C -0.16 -1.71 6.30 -104.03 -0.65 -2.36 16 3 C 0.01 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -3.36 11.90 30.59 0.36 -3.00 16 5 N -0.27 -3.14 3.74 -63.89 -0.24 -3.38 16 6 C 0.09 0.77 11.22 59.84 0.67 1.44 16 7 C -0.03 -0.31 4.71 -82.06 -0.39 -0.70 16 8 C 0.59 7.58 6.66 -12.64 -0.08 7.50 16 9 O -0.53 -8.28 16.56 5.26 0.09 -8.20 16 10 N -0.60 -6.67 3.00 -173.55 -0.52 -7.19 16 11 C 0.12 1.19 6.50 -3.37 -0.02 1.17 16 12 C 0.03 0.42 4.75 -3.46 -0.02 0.40 16 13 N -0.52 -6.81 4.66 -223.48 -1.04 -7.85 16 14 C 0.07 1.12 3.11 -65.56 -0.20 0.92 16 15 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 16 C -0.14 -2.37 6.46 -24.89 -0.16 -2.53 16 17 C 0.18 4.13 5.37 -3.06 -0.02 4.11 16 18 N -0.60 -14.91 3.39 -170.07 -0.58 -15.49 16 19 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.11 2.12 6.04 -2.53 -0.02 2.10 16 28 C 0.04 0.47 5.39 -3.70 -0.02 0.45 16 29 C 0.12 1.23 6.61 -3.60 -0.02 1.21 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.84 7.65 -51.92 -0.40 0.44 16 37 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.08 0.84 6.45 -51.93 -0.33 0.50 16 39 H 0.05 0.62 6.30 -51.93 -0.33 0.30 16 40 H 0.10 1.23 5.82 -51.93 -0.30 0.93 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.99 5.80 -51.93 -0.30 0.69 16 43 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 44 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.02 0.36 5.63 -51.93 -0.29 0.07 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.04 0.53 7.82 -51.93 -0.41 0.12 16 49 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 50 H 0.10 1.04 7.04 -51.93 -0.37 0.68 16 51 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -32.97 396.49 -9.53 -42.50 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.11 Total: -0.74 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.02 Total: 6.56 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.44 Total: -62.90 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.97 -9.53 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046053278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.866 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds