Wall clock time and date at job start Wed Apr 1 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39672 * 127.31627 * 2 1 4 4 N 1.30864 * 107.86119 * 180.02562 * 3 2 1 5 5 N 1.28450 * 110.92536 * 359.71423 * 4 3 2 6 6 C 1.46493 * 125.19043 * 180.31487 * 5 4 3 7 7 C 1.36600 * 109.61754 * 0.46380 * 5 4 3 8 8 C 1.47164 * 126.88469 * 179.81563 * 7 5 4 9 9 O 1.21623 * 120.00312 * 90.26370 * 8 7 5 10 10 N 1.34778 * 119.99638 * 270.26886 * 8 7 5 11 11 C 1.47074 * 120.88412 * 4.98082 * 10 8 7 12 12 C 1.53696 * 108.27962 * 128.75776 * 11 10 8 13 13 N 1.46897 * 109.25601 * 54.07887 * 12 11 10 14 14 C 1.46900 * 110.99528 * 172.61223 * 13 12 11 15 15 H 1.08999 * 110.88610 * 175.42112 * 14 13 12 16 16 C 1.55164 * 111.00425 * 299.29839 * 14 13 12 17 17 C 1.54326 * 102.93891 * 153.57965 * 16 14 13 18 18 N 1.47022 * 107.27566 * 337.80854 * 17 16 14 19 19 C 1.36928 * 125.65278 * 178.98605 * 18 17 16 20 20 H 1.08003 * 120.00634 * 179.97438 * 19 18 17 21 21 C 1.38822 * 119.99908 * 359.97438 * 19 18 17 22 22 N 1.31610 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47102 * 120.00112 * 23 21 19 26 26 H 1.48498 * 109.47129 * 239.99819 * 23 21 19 27 27 C 1.47432 * 108.70035 * 358.94422 * 18 17 16 28 28 C 1.46896 * 111.27005 * 296.75758 * 13 12 11 29 29 C 1.47077 * 120.87867 * 185.25686 * 10 8 7 30 30 H 1.09004 * 109.47024 * 269.99692 * 1 2 3 31 31 H 1.08998 * 109.47590 * 29.99912 * 1 2 3 32 32 H 1.09004 * 109.47347 * 149.99936 * 1 2 3 33 33 H 1.07999 * 126.06992 * 359.96899 * 3 2 1 34 34 H 1.08998 * 109.47567 * 275.12385 * 6 5 4 35 35 H 1.08996 * 109.47370 * 35.12568 * 6 5 4 36 36 H 1.09009 * 109.46869 * 155.12202 * 6 5 4 37 37 H 1.09010 * 109.62856 * 248.52109 * 11 10 8 38 38 H 1.09002 * 109.63256 * 9.10334 * 11 10 8 39 39 H 1.09005 * 109.64116 * 294.07703 * 12 11 10 40 40 H 1.09001 * 109.42221 * 173.94751 * 12 11 10 41 41 H 1.08998 * 110.72068 * 271.93897 * 16 14 13 42 42 H 1.08995 * 110.71704 * 35.22015 * 16 14 13 43 43 H 1.09000 * 109.88328 * 97.22696 * 17 16 14 44 44 H 1.08997 * 109.88070 * 218.39157 * 17 16 14 45 45 H 0.96998 * 120.00159 * 180.02562 * 22 21 19 46 46 H 1.09007 * 110.36370 * 265.29094 * 27 18 17 47 47 H 1.08997 * 110.36560 * 142.97055 * 27 18 17 48 48 H 1.09003 * 109.49429 * 303.14773 * 28 13 12 49 49 H 1.09000 * 109.49194 * 183.06828 * 28 13 12 50 50 H 1.09002 * 109.63084 * 350.89808 * 29 10 8 51 51 H 1.09000 * 109.63008 * 111.47827 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5876 0.6750 -0.0006 5 7 3.6206 -0.6091 0.0051 6 6 4.8391 -1.4223 0.0128 7 6 2.3461 -1.1006 -0.0006 8 6 1.9455 -2.5167 -0.0008 9 8 1.7701 -3.0993 1.0523 10 7 1.7731 -3.1680 -1.1682 11 6 2.0844 -2.5163 -2.4494 12 6 3.0017 -3.4501 -3.2549 13 7 2.3693 -4.7711 -3.3681 14 6 3.1278 -5.6417 -4.2762 15 1 2.7036 -6.6456 -4.2967 16 6 3.1919 -5.0358 -5.7032 17 6 4.4936 -5.6358 -6.2752 18 7 5.3320 -6.0288 -5.1332 19 6 6.5642 -6.6204 -5.2138 20 1 7.1030 -6.8712 -4.3120 21 6 7.1209 -6.8980 -6.4549 22 7 6.4641 -6.5929 -7.5538 23 14 8.8022 -7.7044 -6.5650 24 1 9.3272 -7.9433 -5.1966 25 1 8.6843 -8.9987 -7.2834 26 1 9.7320 -6.8119 -7.3025 27 6 4.6266 -5.6793 -3.8866 28 6 2.2072 -5.3990 -2.0500 29 6 1.2630 -4.5472 -1.1948 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 2.0449 2.1457 -0.0005 34 1 5.1959 -1.5521 -1.0089 35 1 5.6058 -0.9224 0.6046 36 1 4.6222 -2.3977 0.4486 37 1 1.1623 -2.3373 -3.0026 38 1 2.5936 -1.5704 -2.2649 39 1 3.9613 -3.5484 -2.7472 40 1 3.1574 -3.0348 -4.2506 41 1 2.3309 -5.3486 -6.2940 42 1 3.2557 -3.9487 -5.6580 43 1 4.2627 -6.5102 -6.8837 44 1 5.0127 -4.8896 -6.8767 45 1 6.8529 -6.7872 -8.4210 46 1 4.9501 -4.7018 -3.5289 47 1 4.8019 -6.4397 -3.1256 48 1 3.1778 -5.4702 -1.5591 49 1 1.7867 -6.3972 -2.1719 50 1 1.2289 -4.9447 -0.1804 51 1 0.2637 -4.5597 -1.6298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046053278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:58 Heat of formation + Delta-G solvation = 76.332644 kcal Electronic energy + Delta-G solvation = -32022.305008 eV Core-core repulsion = 27959.061011 eV Total energy + Delta-G solvation = -4063.243997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.60071 -41.30517 -40.03144 -38.01395 -35.69386 -34.98874 -33.92127 -33.03877 -32.15205 -31.08901 -29.82108 -29.04911 -27.49475 -27.09500 -26.02242 -25.00710 -24.11932 -22.44617 -21.95552 -21.66946 -20.90176 -19.78821 -18.96087 -18.64597 -17.99298 -17.23897 -16.89266 -16.79670 -16.55114 -16.26157 -16.12284 -15.73168 -15.45819 -15.32775 -14.69690 -14.65106 -14.35154 -14.29063 -14.18361 -14.12094 -13.86534 -13.73380 -13.55980 -13.39747 -13.24182 -13.06580 -12.93368 -12.83286 -12.59780 -12.41295 -12.20521 -12.13854 -11.98132 -11.78266 -11.71577 -11.66550 -11.35877 -11.30719 -10.73054 -10.20451 -9.99515 -9.68616 -9.37285 -8.85560 -7.88121 -5.23773 0.59435 0.92269 1.43605 1.43855 1.54096 1.56866 1.67777 1.91552 2.45272 2.74439 3.17263 3.29997 3.50128 3.71909 3.72866 3.82485 3.92044 3.99293 4.08095 4.13844 4.16457 4.18141 4.20483 4.27904 4.37510 4.41453 4.44579 4.46664 4.60661 4.62795 4.64973 4.72313 4.79926 4.84330 4.85122 4.88125 5.00344 5.10258 5.13925 5.15010 5.19514 5.26277 5.41654 5.59271 5.67008 5.71931 5.74034 5.91034 6.04757 6.11132 6.19106 6.77578 7.02878 7.07789 7.74516 8.38101 9.21790 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002664 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.149400 B =10506.621508 C =11149.225484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.162 4.162 3 C 0.005 3.995 4 N -0.303 5.303 5 N -0.279 5.279 6 C 0.081 3.919 7 C -0.048 4.048 8 C 0.598 3.402 9 O -0.562 6.562 10 N -0.593 5.593 11 C 0.126 3.874 12 C 0.035 3.965 13 N -0.512 5.512 14 C 0.089 3.911 15 H 0.092 0.908 16 C -0.118 4.118 17 C 0.185 3.815 18 N -0.624 5.624 19 C -0.243 4.243 20 H 0.077 0.923 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.976 3.024 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.107 3.893 28 C 0.042 3.958 29 C 0.122 3.878 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.215 0.785 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.012 0.988 44 H 0.006 0.994 45 H 0.247 0.753 46 H 0.024 0.976 47 H 0.029 0.971 48 H 0.026 0.974 49 H 0.104 0.896 50 H 0.093 0.907 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 13.008 13.632 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.173 4.173 3 C -0.172 4.172 4 N -0.134 5.134 5 N -0.068 5.068 6 C -0.058 4.058 7 C -0.176 4.176 8 C 0.384 3.616 9 O -0.440 6.440 10 N -0.325 5.325 11 C 0.004 3.996 12 C -0.093 4.093 13 N -0.235 5.235 14 C -0.021 4.021 15 H 0.110 0.890 16 C -0.157 4.157 17 C 0.060 3.940 18 N -0.351 5.351 19 C -0.373 4.373 20 H 0.095 0.905 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.804 3.196 24 H -0.192 1.192 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.020 4.020 28 C -0.086 4.086 29 C 0.000 4.000 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.122 0.878 50 H 0.111 0.889 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.444 12.930 13.855 23.236 hybrid contribution 1.543 -1.063 -0.112 1.877 sum -11.902 11.867 13.743 21.710 Atomic orbital electron populations 1.20185 0.86703 1.03649 1.02711 1.21062 0.98036 0.90225 1.07984 1.23995 0.87011 1.01192 1.04985 1.73153 1.25559 0.93388 1.21289 1.45739 1.05772 1.03802 1.51460 1.22338 0.83619 0.94304 1.05579 1.21316 0.86920 0.94454 1.14903 1.17172 0.76946 0.83974 0.83501 1.90812 1.53102 1.67961 1.32153 1.48223 1.63228 1.15197 1.05803 1.21963 1.00575 0.94721 0.82353 1.22672 0.95304 0.90165 1.01162 1.62179 1.48499 1.02445 1.10363 1.22731 0.90193 0.96631 0.92538 0.88974 1.22805 0.97386 1.00317 0.95167 1.20936 0.88469 0.95771 0.88867 1.44680 1.17682 1.70926 1.01802 1.19422 0.93373 1.31707 0.92761 0.90510 1.25615 1.02379 1.02490 0.95145 1.70177 1.38909 1.53677 0.96900 0.85052 0.79368 0.77424 0.77738 1.19234 1.21760 1.21850 1.22320 0.93530 0.97021 0.89112 1.22516 0.98509 0.99109 0.88511 1.21867 0.98015 0.79020 1.01091 0.91078 0.88506 0.92294 0.76805 0.88631 0.86874 0.89447 0.88246 0.89858 0.95010 0.88719 0.89771 0.90573 0.96997 0.97586 0.94326 0.95837 0.95232 0.95518 0.87754 0.88889 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.28 71.24 0.73 -0.29 16 2 C -0.16 -3.11 6.30 -19.48 -0.12 -3.23 16 3 C 0.01 0.09 12.00 85.18 1.02 1.12 16 4 N -0.30 -6.83 11.90 -57.14 -0.68 -7.51 16 5 N -0.28 -6.21 3.74 -356.03 -1.33 -7.54 16 6 C 0.08 1.44 11.22 127.77 1.43 2.87 16 7 C -0.05 -1.08 4.71 40.79 0.19 -0.89 16 8 C 0.60 14.65 6.66 86.59 0.58 15.23 16 9 O -0.56 -17.45 16.56 -4.10 -0.07 -17.52 16 10 N -0.59 -12.13 3.00 -821.23 -2.47 -14.60 16 11 C 0.13 2.31 6.50 86.50 0.56 2.88 16 12 C 0.04 0.80 4.75 86.54 0.41 1.21 16 13 N -0.51 -12.08 4.66 -860.97 -4.01 -16.09 16 14 C 0.09 2.73 3.11 46.31 0.14 2.88 16 15 H 0.09 2.88 8.05 -2.39 -0.02 2.86 16 16 C -0.12 -3.99 6.46 31.79 0.21 -3.79 16 17 C 0.18 8.84 5.37 86.73 0.47 9.30 16 18 N -0.62 -31.39 3.39 -691.97 -2.35 -33.74 16 19 C -0.24 -13.57 10.28 84.04 0.86 -12.71 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.06 -3.56 5.49 84.87 0.47 -3.10 16 22 N -0.95 -56.43 10.31 21.65 0.22 -56.21 16 23 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 C 0.11 4.16 6.04 86.85 0.52 4.68 16 28 C 0.04 0.88 5.39 86.38 0.47 1.35 16 29 C 0.12 2.29 6.61 86.35 0.57 2.86 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.22 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.60 7.65 -2.38 -0.02 1.58 16 37 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.56 6.45 -2.39 -0.02 1.54 16 39 H 0.03 0.82 6.30 -2.38 -0.02 0.81 16 40 H 0.09 2.21 5.82 -2.39 -0.01 2.20 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.08 2.35 5.80 -2.39 -0.01 2.33 16 43 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 44 H 0.01 0.32 7.51 -2.39 -0.02 0.30 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.02 0.92 5.63 -2.38 -0.01 0.90 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.03 0.65 7.82 -2.39 -0.02 0.63 16 49 H 0.10 1.94 8.04 -2.39 -0.02 1.93 16 50 H 0.09 1.88 7.04 -2.39 -0.02 1.86 16 51 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.90 396.49 0.79 -72.12 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.93 Total: 13.19 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 8.51 Total: 20.37 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -10.62 Total: -135.68 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.07 Total: -17.52 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.90 0.79 -72.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046053278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.452 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds