Wall clock time and date at job start Wed Apr 1 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30852 * 125.41852 * 2 1 4 4 C 1.33321 * 109.68670 * 179.97438 * 3 2 1 5 5 C 1.36658 * 107.78640 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84607 * 179.97438 * 5 4 3 7 7 O 1.21679 * 119.99713 * 199.93924 * 6 5 4 8 8 N 1.34781 * 119.99700 * 19.94234 * 6 5 4 9 9 C 1.47080 * 120.87825 * 185.59977 * 8 6 5 10 10 C 1.53243 * 108.52059 * 231.16185 * 9 8 6 11 11 N 1.46898 * 109.33716 * 306.16778 * 10 9 8 12 12 C 1.46898 * 110.99864 * 187.25507 * 11 10 9 13 13 H 1.09000 * 110.88385 * 303.87962 * 12 11 10 14 14 C 1.55159 * 111.00300 * 180.02562 * 12 11 10 15 15 C 1.54325 * 102.94310 * 206.42110 * 14 12 11 16 16 N 1.47020 * 107.26873 * 22.19563 * 15 14 12 17 17 C 1.36941 * 125.65036 * 181.02331 * 16 15 14 18 18 H 1.08001 * 120.00357 * 176.71922 * 17 16 15 19 19 C 1.38807 * 119.99695 * 356.71838 * 17 16 15 20 20 N 1.31621 * 120.00146 * 159.72004 * 19 17 16 21 21 Si 1.86806 * 120.00181 * 339.72260 * 19 17 16 22 22 H 1.48498 * 109.47201 * 65.70686 * 21 19 17 23 23 H 1.48498 * 109.46822 * 305.70864 * 21 19 17 24 24 H 1.48499 * 109.47398 * 185.70717 * 21 19 17 25 25 C 1.47427 * 108.70444 * 1.28344 * 16 15 14 26 26 C 1.46902 * 111.26733 * 63.10333 * 11 10 9 27 27 C 1.47072 * 120.88320 * 5.57175 * 8 6 5 28 28 N 1.34505 * 125.42146 * 180.22197 * 2 1 3 29 29 C 1.46494 * 126.46863 * 0.06093 * 28 2 1 30 30 H 1.08999 * 109.47567 * 90.03126 * 1 2 3 31 31 H 1.09007 * 109.47055 * 210.02793 * 1 2 3 32 32 H 1.08996 * 109.47588 * 330.02775 * 1 2 3 33 33 H 1.08007 * 126.10884 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.63129 * 111.44696 * 9 8 6 35 35 H 1.09007 * 109.62768 * 350.86898 * 9 8 6 36 36 H 1.08999 * 109.49038 * 186.21050 * 10 9 8 37 37 H 1.08995 * 109.51529 * 66.14004 * 10 9 8 38 38 H 1.09007 * 110.72075 * 88.05964 * 14 12 11 39 39 H 1.08996 * 110.72057 * 324.79044 * 14 12 11 40 40 H 1.08997 * 109.88306 * 262.77800 * 15 14 12 41 41 H 1.09003 * 109.88219 * 141.60860 * 15 14 12 42 42 H 0.96995 * 119.99531 * 5.01645 * 20 19 17 43 43 H 1.09002 * 110.36683 * 94.48525 * 25 16 15 44 44 H 1.09001 * 110.37147 * 216.80595 * 25 16 15 45 45 H 1.09002 * 109.49440 * 56.85974 * 26 11 10 46 46 H 1.09010 * 109.48961 * 176.93382 * 26 11 10 47 47 H 1.09004 * 109.63174 * 248.54731 * 27 8 6 48 48 H 1.08997 * 109.63221 * 9.12771 * 27 8 6 49 49 H 1.09002 * 109.47204 * 274.54484 * 29 28 2 50 50 H 1.09004 * 109.47437 * 34.54548 * 29 28 2 51 51 H 1.08999 * 109.47251 * 154.54590 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8028 -1.4983 0.0003 7 8 4.7372 -2.6589 -0.3593 8 7 5.9823 -0.9817 0.3985 9 6 7.2235 -1.7635 0.2914 10 6 7.9332 -1.7386 1.6493 11 7 8.1119 -0.3453 2.0793 12 6 8.9390 -0.2703 3.2909 13 1 8.5116 -0.8744 4.0912 14 6 9.1273 1.2012 3.7455 15 6 10.4689 1.1588 4.5070 16 7 11.2052 -0.0203 4.0285 17 6 12.4362 -0.4261 4.4704 18 1 12.8718 -1.3392 4.0923 19 6 13.1242 0.3362 5.4044 20 7 14.0824 -0.2101 6.1225 21 14 12.6901 2.1375 5.6422 22 1 11.3151 2.2469 6.1923 23 1 12.7577 2.8396 4.3354 24 1 13.6524 2.7580 6.5878 25 6 10.4017 -0.6900 2.9896 26 6 6.8179 0.3196 2.2830 27 6 6.0625 0.3789 0.9511 28 7 2.2865 -1.0961 -0.0042 29 6 1.8311 -2.4884 -0.0109 30 1 -0.3634 -0.0006 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3634 0.8902 0.5134 33 1 4.3978 1.3722 0.0003 34 1 7.8696 -1.3227 -0.4677 35 1 6.9859 -2.7925 0.0213 36 1 8.9073 -2.2193 1.5594 37 1 7.3309 -2.2718 2.3848 38 1 8.3173 1.5069 4.4079 39 1 9.1936 1.8655 2.8839 40 1 10.2848 1.0716 5.5777 41 1 11.0416 2.0628 4.2996 42 1 14.3574 -1.1240 5.9492 43 1 10.7008 -0.3474 1.9990 44 1 10.5087 -1.7721 3.0659 45 1 6.2307 -0.2422 3.0096 46 1 6.9833 1.3316 2.6529 47 1 6.5971 1.0258 0.2555 48 1 5.0574 0.7665 1.1172 49 1 1.6399 -2.8131 1.0119 50 1 0.9141 -2.5681 -0.5948 51 1 2.6005 -3.1202 -0.4547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046054435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:44 Heat of formation + Delta-G solvation = 74.092981 kcal Electronic energy + Delta-G solvation = -31291.613936 eV Core-core repulsion = 27228.272820 eV Total energy + Delta-G solvation = -4063.341116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.43605 -41.17003 -39.94670 -38.29861 -35.98940 -35.02123 -34.24873 -33.26185 -32.17045 -31.21993 -30.16368 -28.82468 -27.84413 -27.57033 -25.54120 -24.72129 -23.97012 -22.44996 -22.17946 -21.49207 -21.00158 -20.28148 -19.55393 -18.36804 -17.79162 -17.33966 -17.16321 -17.09088 -16.86558 -16.21826 -15.98460 -15.65070 -15.57128 -15.18392 -15.15034 -14.96742 -14.62151 -14.39760 -14.28878 -14.21897 -13.98669 -13.73645 -13.60373 -13.38588 -13.27768 -13.19952 -12.98710 -12.87017 -12.54218 -12.33652 -12.33083 -12.06415 -11.71165 -11.62202 -11.48718 -11.42432 -10.98461 -10.93451 -10.76352 -10.63490 -9.98797 -9.51475 -9.34186 -9.12568 -8.65299 -5.43546 0.19141 1.30721 1.41774 1.53132 1.68728 1.73909 2.05092 2.11168 2.55715 2.66133 3.14519 3.28377 3.40184 3.43796 3.58255 3.79158 3.83541 3.87337 3.89780 3.99198 4.12920 4.17849 4.26033 4.26240 4.27519 4.34698 4.37179 4.45804 4.56204 4.57409 4.65892 4.69639 4.71730 4.73280 4.80410 4.83791 4.92148 4.94821 5.00980 5.04231 5.09181 5.12439 5.25061 5.31277 5.42168 5.51667 5.94092 6.01267 6.01740 6.09758 6.21765 6.78583 6.83411 6.94413 7.46718 8.10436 8.87080 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002201 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.528597 B =12720.884699 C =13471.964764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.230 3.770 3 N -0.523 5.523 4 C 0.032 3.968 5 C -0.112 4.112 6 C 0.594 3.406 7 O -0.582 6.582 8 N -0.596 5.596 9 C 0.128 3.872 10 C 0.046 3.954 11 N -0.524 5.524 12 C 0.085 3.915 13 H 0.044 0.956 14 C -0.106 4.106 15 C 0.099 3.901 16 N -0.635 5.635 17 C -0.314 4.314 18 H 0.044 0.956 19 C -0.086 4.086 20 N -0.962 5.962 21 Si 1.110 2.890 22 H -0.242 1.242 23 H -0.284 1.284 24 H -0.314 1.314 25 C 0.147 3.853 26 C 0.039 3.961 27 C 0.088 3.912 28 N -0.431 5.431 29 C 0.058 3.942 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.245 0.755 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.123 0.877 49 H 0.090 0.910 50 H 0.120 0.880 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.663 1.586 -14.631 35.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.032 4.032 3 N -0.242 5.242 4 C -0.122 4.122 5 C -0.228 4.228 6 C 0.384 3.616 7 O -0.464 6.464 8 N -0.327 5.327 9 C 0.005 3.995 10 C -0.083 4.083 11 N -0.249 5.249 12 C -0.024 4.024 13 H 0.062 0.938 14 C -0.144 4.144 15 C -0.026 4.026 16 N -0.363 5.363 17 C -0.443 4.443 18 H 0.062 0.938 19 C -0.279 4.279 20 N -0.607 5.607 21 Si 0.937 3.063 22 H -0.166 1.166 23 H -0.212 1.212 24 H -0.243 1.243 25 C 0.022 3.978 26 C -0.089 4.089 27 C -0.033 4.033 28 N -0.112 5.112 29 C -0.083 4.083 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.131 0.869 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.108 0.892 50 H 0.138 0.862 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -32.405 3.086 -14.279 35.546 hybrid contribution 0.833 -3.426 -0.135 3.528 sum -31.572 -0.339 -14.413 34.708 Atomic orbital electron populations 1.20503 0.81364 1.05835 1.05298 1.24298 0.97533 0.80553 1.00783 1.70202 1.02593 1.29112 1.22303 1.23503 0.95844 0.91402 1.01485 1.20641 0.85571 0.95302 1.21309 1.16987 0.82431 0.85293 0.76921 1.90741 1.85941 1.18433 1.51244 1.47874 1.06263 1.17249 1.61325 1.21704 0.83567 0.97220 0.96981 1.22434 1.00628 0.89299 0.95964 1.61940 1.15494 1.15572 1.31856 1.22590 0.92359 0.97198 0.90244 0.93776 1.22633 0.95390 0.95737 1.00614 1.22175 0.93386 0.89307 0.97698 1.44870 1.17492 1.29566 1.44405 1.20007 0.95173 1.05811 1.23287 0.93828 1.27173 0.97212 1.09063 0.94421 1.71049 1.35857 1.15972 1.37774 0.83432 0.76322 0.70880 0.75659 1.16639 1.21192 1.24300 1.21609 0.89761 0.95019 0.91453 1.22620 0.88362 1.01279 0.96629 1.22876 1.03276 0.82235 0.94936 1.45323 1.04688 1.09398 1.51755 1.22481 1.03245 0.77467 1.05111 0.88164 0.88325 0.88135 0.77174 0.89164 0.89307 0.89502 0.95307 0.88231 0.88536 0.94589 0.95391 0.94584 0.94593 0.95440 0.95105 0.86900 0.87991 0.85930 0.89174 0.86191 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.00 71.23 0.71 0.29 16 2 C 0.23 3.54 7.88 138.19 1.09 4.63 16 3 N -0.52 -10.17 11.20 -187.40 -2.10 -12.27 16 4 C 0.03 0.56 9.62 84.10 0.81 1.37 16 5 C -0.11 -2.26 6.59 40.01 0.26 -2.00 16 6 C 0.59 13.71 7.62 86.47 0.66 14.37 16 7 O -0.58 -16.60 14.39 -4.28 -0.06 -16.66 16 8 N -0.60 -11.70 3.01 -822.55 -2.48 -14.18 16 9 C 0.13 2.60 6.61 86.35 0.57 3.17 16 10 C 0.05 1.03 5.52 86.38 0.48 1.51 16 11 N -0.52 -12.03 4.52 -861.46 -3.90 -15.92 16 12 C 0.09 2.52 2.73 46.38 0.13 2.64 16 13 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 14 C -0.11 -2.98 5.03 31.78 0.16 -2.82 16 15 C 0.10 4.01 4.58 86.73 0.40 4.41 16 16 N -0.64 -31.00 3.36 -691.55 -2.32 -33.32 16 17 C -0.31 -18.65 10.53 84.03 0.89 -17.76 16 18 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 19 C -0.09 -5.25 5.49 84.86 0.47 -4.78 16 20 N -0.96 -63.15 13.70 21.65 0.30 -62.85 16 21 Si 1.11 53.84 24.55 68.60 1.68 55.52 16 22 H -0.24 -10.11 5.23 99.48 0.52 -9.59 16 23 H -0.28 -13.00 6.88 99.48 0.68 -12.32 16 24 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 25 C 0.15 5.75 5.96 86.93 0.52 6.26 16 26 C 0.04 0.68 5.43 86.38 0.47 1.15 16 27 C 0.09 1.28 5.30 86.35 0.46 1.74 16 28 N -0.43 -7.29 3.17 -524.96 -1.67 -8.96 16 29 C 0.06 0.66 10.49 127.77 1.34 2.00 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.15 7.79 -2.38 -0.02 0.13 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.21 2.61 5.56 -2.91 -0.02 2.60 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.97 7.04 -2.38 -0.02 1.95 16 36 H 0.09 2.09 7.05 -2.39 -0.02 2.07 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.10 2.19 7.96 -2.38 -0.02 2.17 16 39 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 40 H 0.04 1.54 6.37 -2.39 -0.02 1.53 16 41 H 0.03 1.18 4.33 -2.39 -0.01 1.17 16 42 H 0.24 16.20 8.73 -92.71 -0.81 15.39 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.03 1.12 7.87 -2.39 -0.02 1.10 16 45 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 1.60 6.64 -2.38 -0.02 1.58 16 47 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.12 1.53 3.75 -2.39 -0.01 1.52 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.12 0.54 7.86 -2.38 -0.02 0.52 16 51 H 0.09 1.45 6.13 -2.39 -0.01 1.44 16 Total: -1.00 -82.08 383.04 -0.45 -82.52 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.69 Total: 9.91 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 9.40 Total: 16.20 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -12.16 Total: -147.50 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.06 Total: -16.66 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 1.68 Total: 55.52 kcal Total: -82.08 -0.45 -82.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046054435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.617 kcal (2) G-P(sol) polarization free energy of solvation -82.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds