Wall clock time and date at job start Wed Apr 1 2020 05:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30852 * 125.41675 * 2 1
4 4 C 1.33318 * 109.68129 * 179.78667 * 3 2 1
5 5 C 1.50698 * 126.10808 * 180.27719 * 4 3 2
6 6 C 1.36663 * 107.79056 * 0.38015 * 4 3 2
7 7 C 1.46761 * 126.84723 * 179.89863 * 6 4 3
8 8 O 1.21670 * 120.00375 * 28.09900 * 7 6 4
9 9 N 1.34784 * 119.99612 * 208.10116 * 7 6 4
10 10 C 1.47075 * 120.88318 * 4.70159 * 9 7 6
11 11 C 1.53244 * 108.52250 * 231.16631 * 10 9 7
12 12 N 1.46898 * 109.33561 * 306.16846 * 11 10 9
13 13 C 1.46897 * 110.99925 * 187.24968 * 12 11 10
14 14 H 1.08999 * 110.89371 * 303.88951 * 13 12 11
15 15 C 1.55157 * 111.00669 * 180.02562 * 13 12 11
16 16 C 1.54324 * 102.94134 * 206.42723 * 15 13 12
17 17 N 1.47022 * 107.27583 * 22.19619 * 16 15 13
18 18 C 1.36929 * 125.64886 * 181.02334 * 17 16 15
19 19 H 1.08008 * 119.99633 * 171.64249 * 18 17 16
20 20 C 1.38808 * 120.00262 * 351.63791 * 18 17 16
21 21 N 1.31627 * 119.99868 * 151.67511 * 20 18 17
22 22 Si 1.86802 * 120.00152 * 331.67911 * 20 18 17
23 23 H 1.48493 * 109.47041 * 84.74582 * 22 20 18
24 24 H 1.48505 * 109.46889 * 324.74527 * 22 20 18
25 25 H 1.48500 * 109.46967 * 204.74805 * 22 20 18
26 26 C 1.47420 * 108.69883 * 1.28421 * 17 16 15
27 27 C 1.46904 * 111.26791 * 63.10871 * 12 11 10
28 28 C 1.47082 * 120.87720 * 184.68485 * 9 7 6
29 29 N 1.34496 * 125.41518 * 180.02562 * 2 1 3
30 30 H 0.96997 * 126.47587 * 0.02562 * 29 2 1
31 31 H 1.08998 * 109.47145 * 269.97678 * 1 2 3
32 32 H 1.09003 * 109.47271 * 29.97287 * 1 2 3
33 33 H 1.09000 * 109.47347 * 149.97529 * 1 2 3
34 34 H 1.08994 * 109.47432 * 270.12289 * 5 4 3
35 35 H 1.09010 * 109.47131 * 30.11889 * 5 4 3
36 36 H 1.08999 * 109.47660 * 150.11762 * 5 4 3
37 37 H 1.08995 * 109.62801 * 111.45528 * 10 9 7
38 38 H 1.08999 * 109.63013 * 350.87313 * 10 9 7
39 39 H 1.08998 * 109.48953 * 186.20891 * 11 10 9
40 40 H 1.08998 * 109.51611 * 66.14155 * 11 10 9
41 41 H 1.08998 * 110.72051 * 88.06787 * 15 13 12
42 42 H 1.08999 * 110.71914 * 324.78984 * 15 13 12
43 43 H 1.08998 * 109.88581 * 262.77461 * 16 15 13
44 44 H 1.09009 * 109.88016 * 141.61456 * 16 15 13
45 45 H 0.96993 * 119.99912 * 5.02611 * 21 20 18
46 46 H 1.08997 * 110.36849 * 94.48443 * 26 17 16
47 47 H 1.09008 * 110.36807 * 216.80866 * 26 17 16
48 48 H 1.08998 * 109.49405 * 56.84897 * 27 12 11
49 49 H 1.09005 * 109.48921 * 176.93156 * 27 12 11
50 50 H 1.09000 * 109.62281 * 248.54286 * 28 9 7
51 51 H 1.09001 * 109.63081 * 9.12415 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2653 1.0664 0.0000
4 6 3.5485 0.7048 0.0047
5 6 4.7335 1.6359 0.0122
6 6 3.5976 -0.6609 -0.0009
7 6 4.8028 -1.4983 -0.0007
8 8 5.8313 -1.0842 0.5005
9 7 4.7704 -2.7261 -0.5557
10 6 3.5699 -3.2061 -1.2569
11 6 3.1963 -4.5825 -0.6961
12 7 4.3613 -5.4735 -0.7778
13 6 3.9988 -6.8489 -0.4107
14 1 3.5511 -6.8810 0.5826
15 6 5.2293 -7.7901 -0.4962
16 6 4.5915 -9.1692 -0.7660
17 7 3.2607 -8.9295 -1.3431
18 6 2.3621 -9.8968 -1.7060
19 1 1.3588 -9.6207 -1.9953
20 6 2.7406 -11.2323 -1.7021
21 7 1.8411 -12.1706 -1.4943
22 14 4.5263 -11.6980 -1.9916
23 1 5.2710 -11.6250 -0.7090
24 1 5.1308 -10.7576 -2.9692
25 1 4.5966 -13.0813 -2.5269
26 6 3.0566 -7.4752 -1.4722
27 6 5.4680 -4.9812 0.0534
28 6 5.9347 -3.6213 -0.4766
29 7 2.2864 -1.0961 -0.0005
30 1 1.9849 -2.0180 -0.0013
31 1 -0.3633 -0.0004 1.0276
32 1 -0.3634 0.8902 -0.5134
33 1 -0.3634 -0.8897 -0.5142
34 1 5.0223 1.8647 -1.0136
35 1 4.4677 2.5581 0.5290
36 1 5.5675 1.1585 0.5266
37 1 3.7777 -3.2895 -2.3236
38 1 2.7477 -2.5092 -1.0945
39 1 2.3759 -5.0019 -1.2784
40 1 2.8887 -4.4804 0.3446
41 1 5.7766 -7.7961 0.4464
42 1 5.8811 -7.4989 -1.3200
43 1 4.4962 -9.7228 0.1681
44 1 5.2056 -9.7302 -1.4707
45 1 0.9035 -11.9349 -1.4166
46 1 3.3326 -7.1406 -2.4722
47 1 2.0195 -7.2171 -1.2576
48 1 5.1290 -4.8732 1.0837
49 1 6.2952 -5.6901 0.0147
50 1 6.3698 -3.7445 -1.4683
51 1 6.6760 -3.1988 0.2017
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046063199.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:05:17
Heat of formation + Delta-G solvation = 84.287648 kcal
Electronic energy + Delta-G solvation = -31396.137090 eV
Core-core repulsion = 27333.238047 eV
Total energy + Delta-G solvation = -4062.899042 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-42.80227 -40.27868 -38.79450 -37.09275 -34.78733 -33.69501 -32.80561 -32.28510
-31.42703 -29.72446 -29.50342 -28.66494 -27.32367 -25.84535 -24.39248 -23.43218
-22.50988 -21.74761 -20.99966 -20.35800 -19.95344 -19.58517 -18.14478 -17.50660
-16.92690 -16.34162 -16.16917 -15.76474 -15.53479 -15.25233 -15.14443 -14.58684
-14.33608 -14.24672 -14.07697 -13.61990 -13.43134 -13.35735 -13.24848 -13.00462
-12.88896 -12.79043 -12.58911 -12.41777 -12.37717 -12.29443 -11.84516 -11.66162
-11.34567 -11.17263 -11.09632 -10.72106 -10.68409 -10.44004 -10.31038 -10.27660
-10.14775 -9.62107 -9.24345 -9.15282 -8.70179 -8.47842 -8.41835 -7.15649
-6.38931 -3.21829 0.93792 2.26567 2.41109 2.57518 2.95843 3.39025
3.48778 3.59152 3.68427 3.84463 4.07570 4.42407 4.48264 4.49755
4.56208 4.70813 4.74001 4.82461 4.93309 4.96248 5.01291 5.02797
5.08075 5.22663 5.27559 5.33696 5.35277 5.40647 5.41005 5.46716
5.50118 5.51622 5.52877 5.68721 5.71801 5.77733 5.79908 6.02532
6.07198 6.11561 6.25393 6.32216 6.42618 6.48731 6.73077 6.75016
6.88502 6.92432 7.07908 7.55212 7.65156 7.73421 8.28799 8.98691
9.55152 10.21206 11.10197
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.020224 B = 0.002372 C = 0.002157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1384.179862 B =11803.317334 C =12977.695397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.240 3.760
3 N -0.493 5.493
4 C 0.097 3.903
5 C -0.082 4.082
6 C -0.092 4.092
7 C 0.599 3.401
8 O -0.525 6.525
9 N -0.610 5.610
10 C 0.097 3.903
11 C 0.038 3.962
12 N -0.524 5.524
13 C 0.067 3.933
14 H 0.052 0.948
15 C -0.121 4.121
16 C 0.118 3.882
17 N -0.609 5.609
18 C -0.333 4.333
19 H 0.076 0.924
20 C -0.019 4.019
21 N -0.916 5.916
22 Si 1.068 2.932
23 H -0.293 1.293
24 H -0.293 1.293
25 H -0.299 1.299
26 C 0.149 3.851
27 C 0.039 3.961
28 C 0.120 3.880
29 N -0.554 5.554
30 H 0.425 0.575
31 H 0.087 0.913
32 H 0.096 0.904
33 H 0.079 0.921
34 H 0.072 0.928
35 H 0.074 0.926
36 H 0.090 0.910
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.096 0.904
40 H 0.035 0.965
41 H 0.065 0.935
42 H 0.077 0.923
43 H 0.040 0.960
44 H 0.030 0.970
45 H 0.263 0.737
46 H 0.033 0.967
47 H 0.038 0.962
48 H 0.037 0.963
49 H 0.095 0.905
50 H 0.080 0.920
51 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.377 24.937 3.096 25.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.024 4.024
3 N -0.215 5.215
4 C -0.037 4.037
5 C -0.139 4.139
6 C -0.207 4.207
7 C 0.387 3.613
8 O -0.401 6.401
9 N -0.344 5.344
10 C -0.027 4.027
11 C -0.092 4.092
12 N -0.249 5.249
13 C -0.041 4.041
14 H 0.070 0.930
15 C -0.159 4.159
16 C -0.008 4.008
17 N -0.337 5.337
18 C -0.460 4.460
19 H 0.094 0.906
20 C -0.220 4.220
21 N -0.556 5.556
22 Si 0.901 3.099
23 H -0.221 1.221
24 H -0.221 1.221
25 H -0.227 1.227
26 C 0.022 3.978
27 C -0.090 4.090
28 C -0.002 4.002
29 N -0.166 5.166
30 H 0.270 0.730
31 H 0.105 0.895
32 H 0.115 0.885
33 H 0.098 0.902
34 H 0.091 0.909
35 H 0.093 0.907
36 H 0.109 0.891
37 H 0.105 0.895
38 H 0.100 0.900
39 H 0.114 0.886
40 H 0.054 0.946
41 H 0.084 0.916
42 H 0.095 0.905
43 H 0.058 0.942
44 H 0.047 0.953
45 H 0.073 0.927
46 H 0.051 0.949
47 H 0.056 0.944
48 H 0.055 0.945
49 H 0.113 0.887
50 H 0.098 0.902
51 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 3.797 24.580 2.807 25.030
hybrid contribution -1.383 -0.137 0.740 1.574
sum 2.415 24.443 3.547 24.817
Atomic orbital electron populations
1.20343 0.84045 1.04771 1.04244 1.23505 0.95955 0.81588 1.01334
1.70100 1.01568 1.28277 1.21517 1.21047 0.93242 0.90085 0.99328
1.20322 0.93193 0.97470 1.02952 1.20754 0.83776 0.95352 1.20803
1.16880 0.86300 0.80204 0.77917 1.90803 1.31376 1.71499 1.46394
1.48102 1.16197 1.14884 1.55203 1.22278 0.87171 0.94914 0.98294
1.22518 0.94467 0.92406 0.99766 1.61930 1.06835 1.01846 1.54261
1.22942 0.97369 0.85766 0.98047 0.92980 1.22644 0.96678 0.95244
1.01357 1.21633 0.87393 0.94637 0.97093 1.44759 1.15029 1.00608
1.73285 1.19978 0.92199 0.86978 1.46827 0.90582 1.25771 1.06526
0.91024 0.98704 1.70937 1.02724 1.35054 1.46909 0.83740 0.75388
0.74216 0.76513 1.22129 1.22083 1.22719 1.21503 0.95631 0.85274
0.95376 1.22532 0.95659 0.96068 0.94723 1.21794 0.87477 0.88025
1.02913 1.43931 1.06004 1.10239 1.56426 0.73041 0.89469 0.88493
0.90184 0.90889 0.90701 0.89141 0.89468 0.89961 0.88606 0.94633
0.91642 0.90456 0.94207 0.95268 0.92709 0.94909 0.94352 0.94509
0.88654 0.90213 0.88440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.34 10.51 36.01 0.38 0.04 16
2 C 0.24 2.07 8.12 -155.62 -1.26 0.80 16
3 N -0.49 -5.63 11.20 -6.85 -0.08 -5.70 16
4 C 0.10 1.13 7.14 -82.52 -0.59 0.54 16
5 C -0.08 -0.81 10.17 36.00 0.37 -0.44 16
6 C -0.09 -1.01 6.42 -82.14 -0.53 -1.54 16
7 C 0.60 7.17 7.57 -12.81 -0.10 7.07 16
8 O -0.52 -7.54 14.66 5.22 0.08 -7.46 16
9 N -0.61 -6.28 3.01 -173.98 -0.52 -6.81 16
10 C 0.10 0.83 6.23 -3.60 -0.02 0.81 16
11 C 0.04 0.37 5.52 -3.70 -0.02 0.35 16
12 N -0.52 -6.27 4.53 -223.63 -1.01 -7.29 16
13 C 0.07 1.02 2.73 -65.44 -0.18 0.84 16
14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
15 C -0.12 -1.91 5.03 -24.90 -0.13 -2.04 16
16 C 0.12 2.51 4.91 -3.06 -0.02 2.49 16
17 N -0.61 -14.59 3.30 -169.93 -0.56 -15.15 16
18 C -0.33 -9.37 10.42 -15.06 -0.16 -9.52 16
19 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16
20 C -0.02 -0.56 5.42 -17.43 -0.09 -0.66 16
21 N -0.92 -28.32 13.70 55.49 0.76 -27.56 16
22 Si 1.07 26.61 24.66 -169.99 -4.19 22.42 16
23 H -0.29 -6.87 6.68 56.52 0.38 -6.49 16
24 H -0.29 -7.01 6.73 56.52 0.38 -6.63 16
25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16
26 C 0.15 2.81 5.96 -2.41 -0.01 2.80 16
27 C 0.04 0.41 5.43 -3.70 -0.02 0.39 16
28 C 0.12 1.20 6.58 -3.60 -0.02 1.18 16
29 N -0.55 -4.59 4.92 -7.02 -0.03 -4.63 16
30 H 0.42 2.56 6.58 -40.82 -0.27 2.29 16
31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16
32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16
36 H 0.09 0.97 6.40 -51.93 -0.33 0.64 16
37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
38 H 0.08 0.58 3.38 -51.93 -0.18 0.40 16
39 H 0.10 0.93 7.05 -51.93 -0.37 0.56 16
40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
41 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16
42 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16
43 H 0.04 0.89 7.72 -51.93 -0.40 0.49 16
44 H 0.03 0.66 3.89 -51.92 -0.20 0.46 16
45 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16
46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
47 H 0.04 0.71 7.87 -51.92 -0.41 0.31 16
48 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16
49 H 0.10 0.96 6.64 -51.93 -0.34 0.61 16
50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
51 H 0.10 1.01 7.09 -51.93 -0.37 0.64 16
LS Contribution 387.69 15.07 5.84 5.84
Total: -1.00 -34.97 387.69 -10.10 -45.07
By element:
Atomic # 1 Polarization: 6.13 SS G_CDS: -7.97 Total: -1.84 kcal
Atomic # 6 Polarization: 5.50 SS G_CDS: -2.40 Total: 3.10 kcal
Atomic # 7 Polarization: -65.68 SS G_CDS: -1.45 Total: -67.13 kcal
Atomic # 8 Polarization: -7.54 SS G_CDS: 0.08 Total: -7.46 kcal
Atomic # 14 Polarization: 26.61 SS G_CDS: -4.19 Total: 22.42 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -34.97 -10.10 -45.07 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046063199.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.356 kcal
(2) G-P(sol) polarization free energy of solvation -34.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds