Wall clock time and date at job start Wed Apr 1 2020 05:05:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30852 * 125.41675 * 2 1
4 4 C 1.33318 * 109.68129 * 179.78667 * 3 2 1
5 5 C 1.50698 * 126.10808 * 180.27719 * 4 3 2
6 6 C 1.36663 * 107.79056 * 0.38015 * 4 3 2
7 7 C 1.46761 * 126.84723 * 179.89863 * 6 4 3
8 8 O 1.21670 * 120.00375 * 28.09900 * 7 6 4
9 9 N 1.34784 * 119.99612 * 208.10116 * 7 6 4
10 10 C 1.47075 * 120.88318 * 4.70159 * 9 7 6
11 11 C 1.53244 * 108.52250 * 231.16631 * 10 9 7
12 12 N 1.46898 * 109.33561 * 306.16846 * 11 10 9
13 13 C 1.46897 * 110.99925 * 187.24968 * 12 11 10
14 14 H 1.08999 * 110.89371 * 303.88951 * 13 12 11
15 15 C 1.55157 * 111.00669 * 180.02562 * 13 12 11
16 16 C 1.54324 * 102.94134 * 206.42723 * 15 13 12
17 17 N 1.47022 * 107.27583 * 22.19619 * 16 15 13
18 18 C 1.36929 * 125.64886 * 181.02334 * 17 16 15
19 19 H 1.08008 * 119.99633 * 171.64249 * 18 17 16
20 20 C 1.38808 * 120.00262 * 351.63791 * 18 17 16
21 21 N 1.31627 * 119.99868 * 151.67511 * 20 18 17
22 22 Si 1.86802 * 120.00152 * 331.67911 * 20 18 17
23 23 H 1.48493 * 109.47041 * 84.74582 * 22 20 18
24 24 H 1.48505 * 109.46889 * 324.74527 * 22 20 18
25 25 H 1.48500 * 109.46967 * 204.74805 * 22 20 18
26 26 C 1.47420 * 108.69883 * 1.28421 * 17 16 15
27 27 C 1.46904 * 111.26791 * 63.10871 * 12 11 10
28 28 C 1.47082 * 120.87720 * 184.68485 * 9 7 6
29 29 N 1.34496 * 125.41518 * 180.02562 * 2 1 3
30 30 H 0.96997 * 126.47587 * 0.02562 * 29 2 1
31 31 H 1.08998 * 109.47145 * 269.97678 * 1 2 3
32 32 H 1.09003 * 109.47271 * 29.97287 * 1 2 3
33 33 H 1.09000 * 109.47347 * 149.97529 * 1 2 3
34 34 H 1.08994 * 109.47432 * 270.12289 * 5 4 3
35 35 H 1.09010 * 109.47131 * 30.11889 * 5 4 3
36 36 H 1.08999 * 109.47660 * 150.11762 * 5 4 3
37 37 H 1.08995 * 109.62801 * 111.45528 * 10 9 7
38 38 H 1.08999 * 109.63013 * 350.87313 * 10 9 7
39 39 H 1.08998 * 109.48953 * 186.20891 * 11 10 9
40 40 H 1.08998 * 109.51611 * 66.14155 * 11 10 9
41 41 H 1.08998 * 110.72051 * 88.06787 * 15 13 12
42 42 H 1.08999 * 110.71914 * 324.78984 * 15 13 12
43 43 H 1.08998 * 109.88581 * 262.77461 * 16 15 13
44 44 H 1.09009 * 109.88016 * 141.61456 * 16 15 13
45 45 H 0.96993 * 119.99912 * 5.02611 * 21 20 18
46 46 H 1.08997 * 110.36849 * 94.48443 * 26 17 16
47 47 H 1.09008 * 110.36807 * 216.80866 * 26 17 16
48 48 H 1.08998 * 109.49405 * 56.84897 * 27 12 11
49 49 H 1.09005 * 109.48921 * 176.93156 * 27 12 11
50 50 H 1.09000 * 109.62281 * 248.54286 * 28 9 7
51 51 H 1.09001 * 109.63081 * 9.12415 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2653 1.0664 0.0000
4 6 3.5485 0.7048 0.0047
5 6 4.7335 1.6359 0.0122
6 6 3.5976 -0.6609 -0.0009
7 6 4.8028 -1.4983 -0.0007
8 8 5.8313 -1.0842 0.5005
9 7 4.7704 -2.7261 -0.5557
10 6 3.5699 -3.2061 -1.2569
11 6 3.1963 -4.5825 -0.6961
12 7 4.3613 -5.4735 -0.7778
13 6 3.9988 -6.8489 -0.4107
14 1 3.5511 -6.8810 0.5826
15 6 5.2293 -7.7901 -0.4962
16 6 4.5915 -9.1692 -0.7660
17 7 3.2607 -8.9295 -1.3431
18 6 2.3621 -9.8968 -1.7060
19 1 1.3588 -9.6207 -1.9953
20 6 2.7406 -11.2323 -1.7021
21 7 1.8411 -12.1706 -1.4943
22 14 4.5263 -11.6980 -1.9916
23 1 5.2710 -11.6250 -0.7090
24 1 5.1308 -10.7576 -2.9692
25 1 4.5966 -13.0813 -2.5269
26 6 3.0566 -7.4752 -1.4722
27 6 5.4680 -4.9812 0.0534
28 6 5.9347 -3.6213 -0.4766
29 7 2.2864 -1.0961 -0.0005
30 1 1.9849 -2.0180 -0.0013
31 1 -0.3633 -0.0004 1.0276
32 1 -0.3634 0.8902 -0.5134
33 1 -0.3634 -0.8897 -0.5142
34 1 5.0223 1.8647 -1.0136
35 1 4.4677 2.5581 0.5290
36 1 5.5675 1.1585 0.5266
37 1 3.7777 -3.2895 -2.3236
38 1 2.7477 -2.5092 -1.0945
39 1 2.3759 -5.0019 -1.2784
40 1 2.8887 -4.4804 0.3446
41 1 5.7766 -7.7961 0.4464
42 1 5.8811 -7.4989 -1.3200
43 1 4.4962 -9.7228 0.1681
44 1 5.2056 -9.7302 -1.4707
45 1 0.9035 -11.9349 -1.4166
46 1 3.3326 -7.1406 -2.4722
47 1 2.0195 -7.2171 -1.2576
48 1 5.1290 -4.8732 1.0837
49 1 6.2952 -5.6901 0.0147
50 1 6.3698 -3.7445 -1.4683
51 1 6.6760 -3.1988 0.2017
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046063199.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:05:15
Heat of formation + Delta-G solvation = 59.026153 kcal
Electronic energy + Delta-G solvation = -31397.232510 eV
Core-core repulsion = 27333.238047 eV
Total energy + Delta-G solvation = -4063.994463 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-43.53323 -41.17523 -39.96255 -38.33383 -35.93958 -34.59536 -34.15591 -33.43539
-32.24490 -31.26730 -30.12515 -29.95995 -28.38557 -26.83406 -25.58849 -24.80795
-23.39436 -22.46953 -22.31539 -21.68348 -21.08450 -20.37877 -19.53009 -18.94999
-17.80890 -17.22965 -17.15925 -17.03487 -16.66407 -16.25831 -16.02840 -15.74492
-15.55381 -15.24610 -15.09557 -14.93090 -14.46726 -14.45616 -14.12337 -14.08665
-13.93110 -13.65092 -13.58902 -13.34767 -13.18810 -13.06756 -12.99636 -12.95892
-12.69706 -12.46680 -12.29574 -12.25975 -11.88249 -11.65977 -11.60516 -11.50543
-11.11535 -11.07122 -10.97097 -10.57589 -10.04775 -9.49532 -9.35215 -9.17839
-8.66020 -5.41477 0.15898 1.39585 1.51451 1.53558 1.62065 1.70607
1.83546 2.16113 2.50994 2.59677 3.06659 3.19874 3.36655 3.42862
3.53520 3.67653 3.82385 3.86259 3.94481 3.97736 4.08844 4.11790
4.12657 4.27856 4.35122 4.44899 4.50582 4.51584 4.62846 4.66731
4.70283 4.71820 4.74354 4.76599 4.78682 4.89624 4.92286 4.94183
4.97686 5.00539 5.09971 5.11460 5.21490 5.27270 5.49431 5.55941
5.90393 5.96572 6.09912 6.11991 6.18905 6.81023 6.82012 6.87970
7.48532 8.12600 8.83891
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.020224 B = 0.002372 C = 0.002157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1384.179862 B =11803.317334 C =12977.695397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.249 3.751
3 N -0.525 5.525
4 C 0.079 3.921
5 C -0.078 4.078
6 C -0.107 4.107
7 C 0.598 3.402
8 O -0.556 6.556
9 N -0.608 5.608
10 C 0.105 3.895
11 C 0.037 3.963
12 N -0.525 5.525
13 C 0.087 3.913
14 H 0.050 0.950
15 C -0.108 4.108
16 C 0.107 3.893
17 N -0.631 5.631
18 C -0.321 4.321
19 H 0.047 0.953
20 C -0.077 4.077
21 N -0.952 5.952
22 Si 1.109 2.891
23 H -0.270 1.270
24 H -0.277 1.277
25 H -0.307 1.307
26 C 0.146 3.854
27 C 0.044 3.956
28 C 0.122 3.878
29 N -0.545 5.545
30 H 0.435 0.565
31 H 0.100 0.900
32 H 0.101 0.899
33 H 0.104 0.896
34 H 0.080 0.920
35 H 0.081 0.919
36 H 0.078 0.922
37 H 0.090 0.910
38 H 0.099 0.901
39 H 0.098 0.902
40 H 0.042 0.958
41 H 0.096 0.904
42 H 0.091 0.909
43 H 0.026 0.974
44 H 0.024 0.976
45 H 0.249 0.751
46 H 0.035 0.965
47 H 0.035 0.965
48 H 0.035 0.965
49 H 0.106 0.894
50 H 0.086 0.914
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.283 26.494 3.274 26.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.015 4.015
3 N -0.247 5.247
4 C -0.055 4.055
5 C -0.136 4.136
6 C -0.222 4.222
7 C 0.387 3.613
8 O -0.434 6.434
9 N -0.341 5.341
10 C -0.019 4.019
11 C -0.092 4.092
12 N -0.250 5.250
13 C -0.022 4.022
14 H 0.067 0.933
15 C -0.146 4.146
16 C -0.018 4.018
17 N -0.359 5.359
18 C -0.449 4.449
19 H 0.065 0.935
20 C -0.272 4.272
21 N -0.596 5.596
22 Si 0.937 3.063
23 H -0.196 1.196
24 H -0.204 1.204
25 H -0.236 1.236
26 C 0.021 3.979
27 C -0.084 4.084
28 C 0.001 3.999
29 N -0.158 5.158
30 H 0.282 0.718
31 H 0.118 0.882
32 H 0.119 0.881
33 H 0.122 0.878
34 H 0.099 0.901
35 H 0.100 0.900
36 H 0.097 0.903
37 H 0.108 0.892
38 H 0.116 0.884
39 H 0.116 0.884
40 H 0.060 0.940
41 H 0.114 0.886
42 H 0.110 0.890
43 H 0.044 0.956
44 H 0.041 0.959
45 H 0.058 0.942
46 H 0.053 0.947
47 H 0.054 0.946
48 H 0.053 0.947
49 H 0.124 0.876
50 H 0.105 0.895
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 4.701 26.171 2.986 26.757
hybrid contribution -1.809 -0.504 0.667 1.993
sum 2.893 25.667 3.653 26.087
Atomic orbital electron populations
1.20566 0.81100 1.06196 1.05496 1.24269 0.97375 0.80958 0.98868
1.70113 1.01716 1.29719 1.23126 1.21360 0.93848 0.90765 0.99503
1.20293 0.92521 0.97441 1.03349 1.20623 0.84475 0.95152 1.21988
1.17002 0.86183 0.80546 0.77565 1.90783 1.32517 1.72258 1.47852
1.48162 1.16770 1.14448 1.54671 1.22298 0.87057 0.94431 0.98083
1.22579 0.93809 0.92452 1.00319 1.61874 1.07939 1.00636 1.54596
1.22587 0.95953 0.87370 0.96302 0.93257 1.22611 0.96760 0.91758
1.03495 1.21809 0.86224 0.97921 0.95877 1.44868 1.15678 1.02063
1.73315 1.19899 0.91957 0.88249 1.44810 0.93476 1.26969 1.09613
0.91475 0.99105 1.71044 1.02329 1.35898 1.50298 0.83202 0.71652
0.73713 0.77714 1.19598 1.20398 1.23580 1.21629 0.96690 0.82778
0.96796 1.22543 0.95280 0.96369 0.94254 1.21789 0.87371 0.87579
1.03209 1.43854 1.05015 1.10837 1.56072 0.71769 0.88156 0.88073
0.87757 0.90127 0.90049 0.90298 0.89183 0.88397 0.88402 0.94026
0.88600 0.89029 0.95619 0.95854 0.94169 0.94742 0.94629 0.94713
0.87570 0.89546 0.88749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.46 10.51 71.24 0.75 0.29 16
2 C 0.25 3.78 8.12 138.20 1.12 4.90 16
3 N -0.53 -11.36 11.20 -175.58 -1.97 -13.33 16
4 C 0.08 1.79 7.14 41.96 0.30 2.09 16
5 C -0.08 -1.54 10.17 71.24 0.72 -0.82 16
6 C -0.11 -2.23 6.42 40.01 0.26 -1.97 16
7 C 0.60 13.58 7.57 86.47 0.65 14.24 16
8 O -0.56 -15.71 14.66 -4.25 -0.06 -15.77 16
9 N -0.61 -11.20 3.01 -822.56 -2.48 -13.68 16
10 C 0.10 1.50 6.23 86.35 0.54 2.04 16
11 C 0.04 0.62 5.52 86.39 0.48 1.09 16
12 N -0.53 -10.87 4.53 -861.44 -3.90 -14.76 16
13 C 0.09 2.37 2.73 46.39 0.13 2.50 16
14 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
15 C -0.11 -3.02 5.03 31.78 0.16 -2.86 16
16 C 0.11 4.30 4.91 86.73 0.43 4.73 16
17 N -0.63 -29.70 3.30 -691.53 -2.28 -31.98 16
18 C -0.32 -18.31 10.42 84.03 0.88 -17.44 16
19 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16
20 C -0.08 -4.56 5.42 84.86 0.46 -4.10 16
21 N -0.95 -60.57 13.70 21.65 0.30 -60.28 16
22 Si 1.11 53.56 24.66 68.60 1.69 55.25 16
23 H -0.27 -11.87 6.68 99.48 0.66 -11.21 16
24 H -0.28 -12.50 6.73 99.48 0.67 -11.83 16
25 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16
26 C 0.15 5.30 5.96 86.94 0.52 5.81 16
27 C 0.04 0.77 5.43 86.38 0.47 1.24 16
28 C 0.12 2.15 6.58 86.35 0.57 2.72 16
29 N -0.55 -7.86 4.92 -176.12 -0.87 -8.72 16
30 H 0.44 4.02 6.58 -92.71 -0.61 3.41 16
31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16
32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
33 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16
34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16
36 H 0.08 1.73 6.40 -2.39 -0.02 1.71 16
37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
38 H 0.10 1.10 3.38 -2.39 -0.01 1.09 16
39 H 0.10 1.63 7.05 -2.39 -0.02 1.61 16
40 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16
41 H 0.10 2.15 7.96 -2.39 -0.02 2.13 16
42 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16
43 H 0.03 1.11 7.72 -2.39 -0.02 1.09 16
44 H 0.02 1.00 3.89 -2.38 -0.01 0.99 16
45 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16
46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
47 H 0.04 1.29 7.87 -2.38 -0.02 1.27 16
48 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16
49 H 0.11 1.68 6.64 -2.38 -0.02 1.67 16
50 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16
51 H 0.09 1.77 7.09 -2.39 -0.02 1.75 16
Total: -1.00 -77.86 387.69 -0.91 -78.77
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: 0.23 Total: 10.04 kcal
Atomic # 6 Polarization: 6.03 SS G_CDS: 8.42 Total: 14.45 kcal
Atomic # 7 Polarization: -131.56 SS G_CDS: -11.19 Total: -142.75 kcal
Atomic # 8 Polarization: -15.71 SS G_CDS: -0.06 Total: -15.77 kcal
Atomic # 14 Polarization: 53.56 SS G_CDS: 1.69 Total: 55.25 kcal
Total: -77.86 -0.91 -78.77 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046063199.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.797 kcal
(2) G-P(sol) polarization free energy of solvation -77.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.940 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds