Wall clock time and date at job start Wed Apr 1 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35322 * 126.12481 * 2 1 4 4 C 1.39873 * 107.91681 * 179.97438 * 3 2 1 5 5 N 1.30841 * 108.20257 * 359.73797 * 4 3 2 6 6 N 1.34942 * 126.12735 * 179.97438 * 2 1 3 7 7 C 1.46502 * 126.03974 * 359.97438 * 6 2 1 8 8 C 1.50705 * 109.46857 * 90.00093 * 7 6 2 9 9 O 1.21280 * 120.00246 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00085 * 180.02562 * 8 7 6 11 11 C 1.47084 * 120.88338 * 179.97438 * 10 8 7 12 12 C 1.53231 * 108.52125 * 231.16343 * 11 10 8 13 13 N 1.46897 * 109.34282 * 306.16801 * 12 11 10 14 14 C 1.46899 * 111.00299 * 187.25155 * 13 12 11 15 15 H 1.09004 * 110.88975 * 297.78215 * 14 13 12 16 16 C 1.55156 * 111.00086 * 61.70215 * 14 13 12 17 17 C 1.54331 * 102.94145 * 153.57517 * 16 14 13 18 18 N 1.47017 * 107.27127 * 337.80772 * 17 16 14 19 19 C 1.36932 * 125.64795 * 178.97189 * 18 17 16 20 20 H 1.07997 * 120.00438 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99993 * 359.97438 * 19 18 17 22 22 N 1.31615 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47291 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47410 * 119.99851 * 23 21 19 26 26 H 1.48498 * 109.47306 * 239.99733 * 23 21 19 27 27 C 1.47431 * 108.70386 * 358.94193 * 18 17 16 28 28 C 1.46906 * 111.26788 * 63.10902 * 13 12 11 29 29 C 1.47083 * 120.87999 * 359.97438 * 10 8 7 30 30 H 1.09005 * 109.47016 * 270.02310 * 1 2 3 31 31 H 1.09002 * 109.47282 * 30.02080 * 1 2 3 32 32 H 1.08996 * 109.47319 * 150.02618 * 1 2 3 33 33 H 1.07989 * 126.04168 * 359.97438 * 3 2 1 34 34 H 1.07996 * 125.89806 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47290 * 330.00724 * 7 6 2 36 36 H 1.08996 * 109.47439 * 209.99925 * 7 6 2 37 37 H 1.08998 * 109.62267 * 111.45053 * 11 10 8 38 38 H 1.08999 * 109.78414 * 350.96993 * 11 10 8 39 39 H 1.08998 * 109.49244 * 186.21159 * 12 11 10 40 40 H 1.08997 * 109.49785 * 66.13162 * 12 11 10 41 41 H 1.08999 * 110.71995 * 35.21639 * 16 14 13 42 42 H 1.09000 * 110.72337 * 271.94203 * 16 14 13 43 43 H 1.09001 * 109.88166 * 218.38640 * 17 16 14 44 44 H 1.09006 * 109.87817 * 97.22896 * 17 16 14 45 45 H 0.96994 * 120.00290 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.36566 * 142.96624 * 27 18 17 47 47 H 1.08996 * 110.36287 * 265.18015 * 27 18 17 48 48 H 1.09002 * 109.49240 * 56.85241 * 28 13 12 49 49 H 1.09001 * 109.49431 * 176.93586 * 28 13 12 50 50 H 1.08997 * 109.63219 * 248.54317 * 29 10 8 51 51 H 1.08995 * 109.62695 * 9.13451 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 7 3.6334 -0.6524 0.0066 6 7 2.3026 -1.0899 0.0005 7 6 1.8539 -2.4846 0.0016 8 6 1.6996 -2.9637 -1.4188 9 8 1.9411 -2.2143 -2.3413 10 7 1.2933 -4.2251 -1.6642 11 6 1.1356 -4.7129 -3.0428 12 6 -0.2555 -5.3403 -3.1810 13 7 -0.4360 -6.3584 -2.1376 14 6 -1.6861 -7.1030 -2.3391 15 1 -2.5488 -6.4403 -2.2694 16 6 -1.6716 -7.8575 -3.6947 17 6 -2.6314 -9.0396 -3.4427 18 7 -2.6938 -9.2488 -1.9888 19 6 -3.4529 -10.1927 -1.3502 20 1 -3.4290 -10.2667 -0.2731 21 6 -4.2532 -11.0547 -2.0874 22 7 -4.2828 -10.9643 -3.4001 23 14 -5.2882 -12.3429 -1.2164 24 1 -5.0787 -12.2375 0.2500 25 1 -6.7228 -12.1191 -1.5283 26 1 -4.8865 -13.6958 -1.6783 27 6 -1.8032 -8.2744 -1.3323 28 6 -0.3896 -5.7608 -0.7963 29 6 0.9957 -5.1505 -0.5603 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.9741 2.1210 -0.0004 34 1 4.5084 1.2892 0.0004 35 1 0.8956 -2.5575 0.5158 36 1 2.5900 -3.1027 0.5156 37 1 1.8981 -5.4622 -3.2554 38 1 1.2338 -3.8821 -3.7415 39 1 -0.3490 -5.8049 -4.1625 40 1 -1.0159 -4.5672 -3.0703 41 1 -0.6688 -8.2174 -3.9250 42 1 -2.0469 -7.2199 -4.4951 43 1 -2.2504 -9.9369 -3.9304 44 1 -3.6233 -8.7997 -3.8257 45 1 -4.8423 -11.5663 -3.9153 46 1 -2.2432 -7.9284 -0.3971 47 1 -0.8247 -8.7184 -1.1489 48 1 -1.1481 -4.9818 -0.7188 49 1 -0.5803 -6.5305 -0.0484 50 1 1.7446 -5.9420 -0.5340 51 1 1.0000 -4.6069 0.3844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046070254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:27 Heat of formation + Delta-G solvation = 95.142542 kcal Electronic energy + Delta-G solvation = -30908.020534 eV Core-core repulsion = 26845.592195 eV Total energy + Delta-G solvation = -4062.428339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.59900 -40.34632 -38.65407 -36.76224 -34.43793 -33.80933 -32.41433 -32.02204 -31.48346 -29.43265 -28.35851 -27.58403 -27.21624 -25.85712 -24.30803 -23.62659 -22.08012 -21.35433 -20.34066 -19.97287 -19.73408 -19.11107 -17.85332 -17.07949 -16.93941 -16.13856 -15.98375 -15.53031 -15.05581 -14.98206 -14.74485 -14.60625 -14.51855 -14.16423 -14.03808 -13.79952 -13.38391 -13.25121 -13.03471 -12.98228 -12.68313 -12.55841 -12.34403 -12.32756 -12.12867 -11.88114 -11.71758 -11.44780 -11.32067 -10.91951 -10.86979 -10.85131 -10.42032 -10.19684 -10.12179 -10.04708 -9.99598 -9.71249 -9.44896 -9.03403 -8.73845 -8.63566 -8.25913 -6.86635 -5.74544 -3.08356 1.52703 2.04811 2.18223 2.63998 2.71356 3.37009 3.42233 3.44993 3.81329 3.96587 4.14181 4.32032 4.47407 4.54213 4.62495 4.70438 4.74778 4.85849 4.89903 5.00558 5.09848 5.16653 5.20297 5.38717 5.40438 5.42965 5.44132 5.49617 5.51875 5.55419 5.62239 5.69025 5.75896 5.80863 5.88933 5.89416 6.12409 6.22711 6.41116 6.42601 6.46586 6.58235 6.66656 6.68895 7.00000 7.08204 7.29044 7.47303 7.52813 7.60236 7.75202 7.79587 8.22517 9.18518 9.78935 10.44586 11.37154 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.001931 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.657408 B =14496.036853 C =14879.671955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.275 4.275 4 C 0.050 3.950 5 N -0.290 5.290 6 N -0.357 5.357 7 C 0.115 3.885 8 C 0.498 3.502 9 O -0.524 6.524 10 N -0.608 5.608 11 C 0.119 3.881 12 C 0.043 3.957 13 N -0.526 5.526 14 C 0.068 3.932 15 H 0.047 0.953 16 C -0.134 4.134 17 C 0.179 3.821 18 N -0.606 5.606 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.039 3.961 29 C 0.108 3.892 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.252 0.748 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.036 0.964 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.544 20.982 7.133 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.304 4.304 4 C -0.136 4.136 5 N -0.110 5.110 6 N -0.140 5.140 7 C -0.011 4.011 8 C 0.284 3.716 9 O -0.399 6.399 10 N -0.343 5.343 11 C -0.004 4.004 12 C -0.086 4.086 13 N -0.251 5.251 14 C -0.041 4.041 15 H 0.065 0.935 16 C -0.173 4.173 17 C 0.054 3.946 18 N -0.332 5.332 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.022 3.978 28 C -0.090 4.090 29 C -0.015 4.015 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.200 0.800 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.054 0.946 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.585 19.689 6.550 24.268 hybrid contribution -1.775 0.462 0.393 1.875 sum 10.810 20.151 6.943 23.898 Atomic orbital electron populations 1.20470 0.87436 1.04140 1.03207 1.21079 0.94635 0.87238 1.00305 1.21201 0.92349 0.98835 1.18040 1.23826 0.98160 0.92124 0.99539 1.77377 0.96081 1.13246 1.24271 1.47947 1.04190 1.04324 1.57526 1.21483 1.03189 0.80434 0.95977 1.20752 0.77637 0.81867 0.91364 1.90761 1.49336 1.54256 1.45592 1.48195 1.66534 1.11215 1.08374 1.21765 0.97268 0.99112 0.82213 1.22452 0.95576 0.93507 0.97078 1.61970 1.36899 1.24979 1.01243 1.22894 0.88007 0.94489 0.98690 0.93528 1.22939 1.01155 0.98529 0.94666 1.21137 0.95796 0.92941 0.84743 1.44418 1.49910 1.36956 1.01953 1.19083 1.17621 1.07871 0.91009 0.90397 1.24815 1.00294 0.99734 0.95690 1.69968 1.42895 1.40065 1.03962 0.86042 0.79892 0.81331 0.78467 1.20508 1.21795 1.21721 1.21465 0.94231 0.88694 0.93421 1.22470 0.95165 0.98524 0.92839 1.21990 0.97967 0.92968 0.88527 0.90010 0.89382 0.91385 0.83548 0.79995 0.86150 0.85666 0.90364 0.88885 0.88932 0.94723 0.91416 0.92652 0.93776 0.93701 0.93782 0.94918 0.95275 0.94571 0.88631 0.89628 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.90 36.01 0.36 -0.27 16 2 C 0.09 0.93 6.93 -82.26 -0.57 0.36 16 3 C -0.28 -2.64 10.72 -40.01 -0.43 -3.07 16 4 C 0.05 0.51 12.03 -17.36 -0.21 0.31 16 5 N -0.29 -3.67 12.58 30.63 0.39 -3.28 16 6 N -0.36 -3.97 3.10 -58.31 -0.18 -4.16 16 7 C 0.11 0.97 4.91 -5.19 -0.03 0.94 16 8 C 0.50 5.64 7.78 -10.98 -0.09 5.55 16 9 O -0.52 -8.19 15.89 5.56 0.09 -8.10 16 10 N -0.61 -6.12 3.01 -172.48 -0.52 -6.63 16 11 C 0.12 1.29 6.59 -3.60 -0.02 1.27 16 12 C 0.04 0.50 5.48 -3.71 -0.02 0.48 16 13 N -0.53 -6.80 4.53 -223.80 -1.01 -7.81 16 14 C 0.07 1.11 2.71 -65.57 -0.18 0.93 16 15 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.13 -2.40 5.32 -24.89 -0.13 -2.54 16 17 C 0.18 4.25 5.37 -3.06 -0.02 4.23 16 18 N -0.61 -15.08 3.39 -170.07 -0.58 -15.66 16 19 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.15 2.90 5.66 -2.53 -0.01 2.89 16 28 C 0.04 0.40 5.48 -3.71 -0.02 0.38 16 29 C 0.11 0.86 6.50 -3.62 -0.02 0.83 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.48 7.72 -51.93 -0.40 0.08 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 0.64 7.18 -51.93 -0.37 0.26 16 36 H 0.13 0.84 8.00 -51.93 -0.42 0.43 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.09 7.07 -51.93 -0.37 0.72 16 39 H 0.09 1.08 6.86 -51.93 -0.36 0.72 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.90 7.94 -51.93 -0.41 0.48 16 43 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 44 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.61 7.85 -51.93 -0.41 0.21 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 0.99 6.80 -51.93 -0.35 0.64 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.40 6.02 -51.93 -0.31 0.09 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -35.45 400.68 -10.24 -45.69 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.37 Total: -2.23 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.64 Total: 5.58 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -1.33 Total: -63.73 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.45 -10.24 -45.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046070254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.833 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds