Wall clock time and date at job start Wed Apr 1 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30449 * 125.99137 * 2 1 4 4 N 1.39931 * 108.89853 * 180.02562 * 3 2 1 5 5 H 0.97006 * 125.75766 * 180.02562 * 4 3 2 6 6 C 1.34266 * 108.49379 * 359.75123 * 4 3 2 7 7 C 1.50700 * 126.29279 * 180.24322 * 6 4 3 8 8 C 1.38035 * 107.41250 * 0.39394 * 6 4 3 9 9 C 1.47430 * 126.41597 * 179.86843 * 8 6 4 10 10 O 1.21602 * 120.00539 * 269.71874 * 9 8 6 11 11 N 1.34781 * 119.99944 * 89.71504 * 9 8 6 12 12 C 1.47081 * 120.88285 * 180.02562 * 11 9 8 13 13 C 1.53242 * 108.51624 * 231.20456 * 12 11 9 14 14 N 1.46900 * 109.34121 * 306.16610 * 13 12 11 15 15 C 1.46901 * 110.99715 * 187.25472 * 14 13 12 16 16 H 1.08993 * 110.88870 * 303.88181 * 15 14 13 17 17 C 1.55159 * 111.00165 * 180.02562 * 15 14 13 18 18 C 1.54317 * 102.94199 * 206.42361 * 17 15 14 19 19 N 1.47025 * 107.27002 * 22.19766 * 18 17 15 20 20 C 1.36941 * 125.64343 * 181.02591 * 19 18 17 21 21 H 1.08004 * 119.99682 * 185.86217 * 20 19 18 22 22 C 1.38809 * 120.00409 * 5.85194 * 20 19 18 23 23 N 1.31621 * 120.00091 * 7.32909 * 22 20 19 24 24 Si 1.86797 * 120.00086 * 187.32322 * 22 20 19 25 25 H 1.48496 * 109.47097 * 84.99270 * 24 22 20 26 26 H 1.48507 * 109.47357 * 324.99550 * 24 22 20 27 27 H 1.48499 * 109.47352 * 204.99398 * 24 22 20 28 28 C 1.47420 * 108.70274 * 1.28135 * 19 18 17 29 29 C 1.46898 * 111.26758 * 63.10945 * 14 13 12 30 30 C 1.47082 * 120.87924 * 0.02562 * 11 9 8 31 31 H 1.09002 * 109.46640 * 269.95754 * 1 2 3 32 32 H 1.09002 * 109.46891 * 29.95246 * 1 2 3 33 33 H 1.08993 * 109.47349 * 149.95568 * 1 2 3 34 34 H 1.08992 * 109.46916 * 270.17925 * 7 6 4 35 35 H 1.08996 * 109.47076 * 30.17951 * 7 6 4 36 36 H 1.09001 * 109.47059 * 150.17701 * 7 6 4 37 37 H 1.08995 * 109.62740 * 111.49780 * 12 11 9 38 38 H 1.08996 * 109.62758 * 350.91324 * 12 11 9 39 39 H 1.08999 * 109.48910 * 186.21104 * 13 12 11 40 40 H 1.08994 * 109.49129 * 66.12991 * 13 12 11 41 41 H 1.09007 * 110.72052 * 88.05956 * 17 15 14 42 42 H 1.09005 * 110.87317 * 324.86137 * 17 15 14 43 43 H 1.09000 * 109.88893 * 262.77491 * 18 17 15 44 44 H 1.09003 * 110.00922 * 141.68160 * 18 17 15 45 45 H 0.97001 * 120.00005 * 179.97438 * 23 22 20 46 46 H 1.09005 * 110.36516 * 94.48830 * 28 19 18 47 47 H 1.09001 * 110.36560 * 216.80828 * 28 19 18 48 48 H 1.09005 * 109.49511 * 56.84985 * 29 14 13 49 49 H 1.08994 * 109.49370 * 176.93516 * 29 14 13 50 50 H 1.09003 * 109.62803 * 248.50739 * 30 11 9 51 51 H 1.09009 * 109.62955 * 9.08639 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3843 1.2300 -0.0004 6 6 3.6439 -0.6981 0.0046 7 6 4.8800 -1.5601 0.0111 8 6 2.3373 -1.1432 -0.0006 9 6 1.8915 -2.5485 -0.0004 10 8 1.7074 -3.1282 -1.0534 11 7 1.6880 -3.1908 1.1669 12 6 1.2438 -4.5928 1.1897 13 6 0.0215 -4.7011 2.1076 14 7 0.3479 -4.1315 3.4217 15 6 -0.7371 -4.3699 4.3829 16 1 -1.6814 -3.9742 4.0091 17 6 -0.3928 -3.7677 5.7708 18 6 -1.2103 -4.6461 6.7411 19 7 -1.4858 -5.9161 6.0535 20 6 -2.2047 -6.9622 6.5674 21 1 -2.2724 -7.8911 6.0206 22 6 -2.8462 -6.8288 7.7911 23 7 -2.8859 -5.6570 8.3892 24 14 -3.6534 -8.3124 8.5891 25 1 -2.6389 -9.0706 9.3643 26 1 -4.2288 -9.1886 7.5371 27 1 -4.7342 -7.8576 9.5003 28 6 -0.8549 -5.8791 4.7217 29 6 0.6556 -2.6987 3.3199 30 6 1.9042 -2.5083 2.4517 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3634 -0.8895 -0.5145 34 1 5.1825 -1.7691 -1.0150 35 1 5.6848 -1.0373 0.5278 36 1 4.6667 -2.4973 0.5251 37 1 2.0456 -5.2247 1.5716 38 1 0.9739 -4.9078 0.1818 39 1 -0.2542 -5.7492 2.2239 40 1 -0.8119 -4.1518 1.6698 41 1 -0.7126 -2.7273 5.8299 42 1 0.6739 -3.8541 5.9779 43 1 -2.1475 -4.1490 6.9913 44 1 -0.6363 -4.8329 7.6488 45 1 -3.3346 -5.5638 9.2441 46 1 0.1321 -6.3406 4.7565 47 1 -1.4849 -6.3838 3.9893 48 1 -0.1867 -2.1772 2.8651 49 1 0.8397 -2.2946 4.3152 50 1 2.7695 -2.9402 2.9546 51 1 2.0710 -1.4451 2.2781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046070975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:20 Heat of formation + Delta-G solvation = 53.758186 kcal Electronic energy + Delta-G solvation = -31519.326703 eV Core-core repulsion = 27455.103804 eV Total energy + Delta-G solvation = -4064.222899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.57509 -40.92909 -39.68883 -37.98432 -35.54259 -34.55787 -33.86278 -32.92655 -32.06935 -30.94171 -29.71295 -29.01775 -28.25913 -27.34621 -25.92173 -24.73701 -23.66778 -21.85615 -21.68067 -21.18184 -21.05299 -19.80795 -18.90705 -18.62931 -17.86801 -16.99387 -16.87085 -16.55204 -16.24381 -16.01716 -15.91548 -15.83248 -15.32571 -14.94566 -14.81069 -14.60282 -14.35571 -14.23963 -14.08288 -13.86049 -13.82475 -13.50818 -13.40580 -13.35051 -13.29519 -12.97343 -12.86113 -12.73079 -12.60202 -12.35576 -12.22170 -11.97968 -11.87080 -11.80129 -11.64946 -11.57120 -11.46570 -10.99362 -10.70491 -10.40089 -9.81772 -9.63904 -9.25814 -8.86572 -7.81363 -5.20052 0.67565 1.32843 1.47147 1.49494 1.49826 1.57309 1.73498 2.10486 2.49652 2.82749 3.34605 3.42756 3.55864 3.66917 3.80319 3.88256 3.99248 4.02659 4.07600 4.17632 4.27627 4.29195 4.32308 4.38303 4.44406 4.57434 4.62018 4.65528 4.67069 4.68947 4.76409 4.79097 4.85104 4.91180 4.94461 4.98495 5.00577 5.03553 5.05759 5.12975 5.24162 5.38996 5.45720 5.48896 5.62937 5.81447 6.04926 6.12205 6.25073 6.26518 6.39472 6.55460 7.11741 7.12652 7.79674 8.44114 9.26285 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.002223 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.478957 B =12591.960520 C =12930.251354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.107 3.893 3 N -0.316 5.316 4 N -0.449 5.449 5 H 0.457 0.543 6 C 0.146 3.854 7 C -0.098 4.098 8 C -0.308 4.308 9 C 0.605 3.395 10 O -0.580 6.580 11 N -0.599 5.599 12 C 0.123 3.877 13 C 0.045 3.955 14 N -0.523 5.523 15 C 0.088 3.912 16 H 0.038 0.962 17 C -0.114 4.114 18 C 0.179 3.821 19 N -0.627 5.627 20 C -0.241 4.241 21 H 0.081 0.919 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.977 3.023 25 H -0.286 1.286 26 H -0.269 1.269 27 H -0.295 1.295 28 C 0.148 3.852 29 C 0.040 3.960 30 C 0.126 3.874 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.026 0.974 44 H -0.005 1.005 45 H 0.247 0.753 46 H 0.034 0.966 47 H 0.035 0.965 48 H 0.033 0.967 49 H 0.099 0.901 50 H 0.089 0.911 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.058 13.272 -17.142 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 N -0.139 5.139 4 N -0.157 5.157 5 H 0.305 0.695 6 C 0.012 3.988 7 C -0.156 4.156 8 C -0.323 4.323 9 C 0.393 3.607 10 O -0.460 6.460 11 N -0.331 5.331 12 C 0.001 3.999 13 C -0.084 4.084 14 N -0.248 5.248 15 C -0.021 4.021 16 H 0.056 0.944 17 C -0.153 4.153 18 C 0.053 3.947 19 N -0.354 5.354 20 C -0.371 4.371 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.806 3.194 25 H -0.213 1.213 26 H -0.194 1.194 27 H -0.221 1.221 28 C 0.022 3.978 29 C -0.088 4.088 30 C 0.004 3.996 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.013 0.987 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.117 0.883 50 H 0.108 0.892 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.269 13.963 -17.361 28.189 hybrid contribution -1.252 -0.925 0.518 1.640 sum 16.017 13.039 -16.843 26.650 Atomic orbital electron populations 1.20294 0.85611 1.03762 1.04065 1.22531 0.97585 0.88861 0.96982 1.77062 0.87288 1.22374 1.27165 1.45988 1.07407 1.04858 1.57459 0.69493 1.21757 0.96289 0.85340 0.95381 1.20712 0.91613 0.98292 1.05024 1.19779 0.93446 0.93318 1.25771 1.17531 0.75617 0.84914 0.82641 1.90747 1.53791 1.68927 1.32536 1.48219 1.65814 1.12977 1.06120 1.21693 0.96540 0.81611 1.00072 1.22461 0.96325 1.01041 0.88560 1.61938 1.39988 1.15026 1.07827 1.22562 0.91502 0.96065 0.91995 0.94381 1.22719 1.00485 0.98639 0.93420 1.20986 0.95910 0.85544 0.92242 1.44736 1.61057 1.15627 1.13968 1.19425 1.23163 0.92162 1.02302 0.90126 1.25651 1.01657 0.99683 0.98958 1.70173 1.48926 1.23126 1.17602 0.85110 0.77465 0.78666 0.78195 1.21252 1.19393 1.22129 1.21618 0.95660 0.94323 0.86152 1.22550 0.97150 0.87886 1.01238 1.21845 0.97790 0.98173 0.81835 0.89049 0.89386 0.91303 0.88655 0.87137 0.89733 0.89396 0.89357 0.89253 0.95200 0.90375 0.90164 0.95620 0.98690 0.94420 0.94818 0.94713 0.94837 0.88309 0.89239 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.28 71.23 0.73 -0.65 16 2 C 0.11 2.20 7.16 43.52 0.31 2.51 16 3 N -0.32 -6.19 12.63 -46.67 -0.59 -6.78 16 4 N -0.45 -5.82 7.29 -46.80 -0.34 -6.16 16 5 H 0.46 2.51 8.96 -213.42 -1.91 0.60 16 6 C 0.15 2.08 7.29 42.14 0.31 2.39 16 7 C -0.10 -0.74 10.25 71.24 0.73 0.00 16 8 C -0.31 -6.25 3.90 -20.15 -0.08 -6.32 16 9 C 0.60 14.48 6.87 86.66 0.60 15.07 16 10 O -0.58 -18.28 16.56 -4.04 -0.07 -18.34 16 11 N -0.60 -12.36 3.01 -821.72 -2.47 -14.83 16 12 C 0.12 2.62 6.60 86.35 0.57 3.19 16 13 C 0.04 1.06 5.52 86.38 0.48 1.54 16 14 N -0.52 -13.31 4.52 -861.42 -3.90 -17.21 16 15 C 0.09 2.91 2.73 46.38 0.13 3.03 16 16 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.11 -3.98 5.03 31.78 0.16 -3.82 16 18 C 0.18 8.77 5.45 86.73 0.47 9.24 16 19 N -0.63 -32.39 3.39 -691.56 -2.35 -34.74 16 20 C -0.24 -13.64 10.26 84.03 0.86 -12.78 16 21 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 22 C -0.07 -3.81 5.45 84.86 0.46 -3.34 16 23 N -0.95 -57.36 10.45 21.65 0.23 -57.13 16 24 Si 0.98 45.97 29.56 68.60 2.03 48.00 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 28 C 0.15 5.98 5.96 86.93 0.52 6.50 16 29 C 0.04 0.83 5.43 86.39 0.47 1.30 16 30 C 0.13 2.15 6.50 86.36 0.56 2.71 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.08 0.78 7.96 -2.39 -0.02 0.76 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.03 7.06 -2.39 -0.02 2.01 16 39 H 0.09 2.17 7.05 -2.39 -0.02 2.16 16 40 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.08 2.39 7.96 -2.38 -0.02 2.37 16 42 H 0.08 2.59 8.10 -2.38 -0.02 2.58 16 43 H 0.03 1.43 6.88 -2.39 -0.02 1.41 16 44 H -0.01 -0.28 7.97 -2.39 -0.02 -0.30 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.03 1.38 7.87 -2.39 -0.02 1.37 16 48 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.10 1.92 6.64 -2.39 -0.02 1.91 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.09 1.49 6.32 -2.38 -0.02 1.47 16 Total: -1.00 -76.15 401.76 -1.16 -77.31 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -0.98 Total: 9.33 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.28 Total: 20.55 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -9.42 Total: -136.85 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.07 Total: -18.34 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.15 -1.16 -77.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046070975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.066 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds