Wall clock time and date at job start Wed Apr 1 2020 05:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34126 * 125.99371 * 2 1 4 4 C 1.30493 * 109.25909 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.70193 * 359.77058 * 4 3 2 6 6 H 0.97004 * 126.39805 * 180.26995 * 5 4 3 7 7 C 1.34672 * 125.98708 * 180.02562 * 2 1 3 8 8 C 1.50699 * 126.59511 * 359.95459 * 7 2 1 9 9 C 1.50700 * 109.46907 * 85.00153 * 8 7 2 10 10 O 1.21279 * 120.00266 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.47081 * 120.88300 * 180.02562 * 11 9 8 13 13 C 1.53234 * 108.52059 * 231.20500 * 12 11 9 14 14 N 1.46895 * 109.34290 * 306.16710 * 13 12 11 15 15 C 1.46903 * 111.00149 * 187.25030 * 14 13 12 16 16 H 1.08995 * 110.64225 * 298.31528 * 15 14 13 17 17 C 1.55154 * 110.71882 * 174.97808 * 15 14 13 18 18 C 1.54910 * 101.58031 * 206.13764 * 17 15 14 19 19 N 1.47426 * 104.83209 * 37.01037 * 18 17 15 20 20 C 1.36932 * 125.64638 * 155.89300 * 19 18 17 21 21 H 1.08001 * 119.99867 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00333 * 359.97290 * 20 19 18 23 23 N 1.31623 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00071 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47007 * 90.00170 * 24 22 20 26 26 H 1.48501 * 109.46993 * 210.00274 * 24 22 20 27 27 H 1.48499 * 109.47317 * 330.00050 * 24 22 20 28 28 C 1.47019 * 108.70209 * 335.87354 * 19 18 17 29 29 C 1.46908 * 111.26676 * 63.10905 * 14 13 12 30 30 C 1.47081 * 120.88167 * 0.02562 * 11 9 8 31 31 H 1.09007 * 109.47077 * 269.99540 * 1 2 3 32 32 H 1.09004 * 109.47446 * 29.99092 * 1 2 3 33 33 H 1.09005 * 109.47787 * 149.99701 * 1 2 3 34 34 H 1.08001 * 125.65065 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47151 * 325.01031 * 8 7 2 36 36 H 1.08995 * 109.47190 * 205.00541 * 8 7 2 37 37 H 1.08998 * 109.62655 * 111.49505 * 12 11 9 38 38 H 1.08999 * 109.62739 * 350.91935 * 12 11 9 39 39 H 1.08998 * 109.49537 * 186.20526 * 13 12 11 40 40 H 1.09004 * 109.49485 * 66.13208 * 13 12 11 41 41 H 1.09002 * 111.00945 * 88.06571 * 17 15 14 42 42 H 1.08999 * 111.00353 * 324.21109 * 17 15 14 43 43 H 1.08998 * 110.36709 * 278.17139 * 18 17 15 44 44 H 1.09005 * 110.36466 * 155.84673 * 18 17 15 45 45 H 0.96997 * 120.00161 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.88389 * 120.48020 * 28 19 18 47 47 H 1.09004 * 109.87600 * 241.48978 * 28 19 18 48 48 H 1.09000 * 109.49706 * 56.85132 * 29 14 13 49 49 H 1.09000 * 109.49136 * 176.93769 * 29 14 13 50 50 H 1.08994 * 109.63092 * 248.50216 * 30 11 9 51 51 H 1.09000 * 109.62848 * 9.08777 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5448 0.7095 -0.0006 5 7 3.5912 -0.6402 0.0042 6 1 4.3913 -1.1887 0.0086 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5276 -0.0002 9 6 1.5778 -2.9698 -1.4154 10 8 1.7369 -2.1940 -2.3339 11 7 1.1600 -4.2275 -1.6605 12 6 0.8919 -4.6798 -3.0341 13 6 -0.5026 -5.3137 -3.0744 14 7 -0.5911 -6.3603 -2.0475 15 6 -1.8498 -7.1086 -2.1655 16 1 -2.7045 -6.4490 -2.0160 17 6 -1.8817 -8.2910 -1.1614 18 6 -2.8461 -9.2747 -1.8699 19 7 -2.5372 -9.1382 -3.3050 20 6 -2.7699 -10.0865 -4.2651 21 1 -2.5069 -9.8892 -5.2938 22 6 -3.3438 -11.3013 -3.9161 23 7 -3.6648 -11.5416 -2.6625 24 14 -3.6619 -12.5945 -5.2261 25 1 -2.4728 -13.4751 -5.3513 26 1 -4.8426 -13.4088 -4.8413 27 1 -3.9233 -11.9277 -6.5269 28 6 -1.9383 -7.8153 -3.5346 29 6 -0.4376 -5.7981 -0.6989 30 6 0.9601 -5.1842 -0.5614 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8901 -0.5137 33 1 -0.3635 -0.8900 -0.5139 34 1 4.4004 1.3686 -0.0003 35 1 0.9355 -2.6222 0.5897 36 1 2.6273 -3.1530 0.4337 37 1 1.6381 -5.4176 -3.3288 38 1 0.9268 -3.8281 -3.7134 39 1 -0.6743 -5.7529 -4.0570 40 1 -1.2553 -4.5494 -2.8807 41 1 -2.2836 -7.9753 -0.1986 42 1 -0.8913 -8.7310 -1.0443 43 1 -3.8819 -8.9959 -1.6766 44 1 -2.6586 -10.2956 -1.5369 45 1 -4.0655 -12.3906 -2.4186 46 1 -0.9406 -7.9285 -3.9586 47 1 -2.5659 -7.2371 -4.2128 48 1 -1.1911 -5.0270 -0.5383 49 1 -0.5620 -6.5887 0.0411 50 1 1.7128 -5.9704 -0.6188 51 1 1.0400 -4.6660 0.3942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046082419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:25 Heat of formation + Delta-G solvation = 42.887200 kcal Electronic energy + Delta-G solvation = -30890.539460 eV Core-core repulsion = 26825.845159 eV Total energy + Delta-G solvation = -4064.694300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.04721 -41.22794 -39.84498 -38.02437 -35.60047 -34.06152 -34.02686 -33.60651 -32.29066 -30.96161 -30.16300 -29.14154 -27.50813 -26.76163 -25.75257 -24.60160 -22.91161 -22.42637 -21.82239 -21.14059 -20.65232 -19.92847 -18.93129 -18.60404 -18.35032 -17.14496 -16.85312 -16.74235 -16.45867 -16.00778 -15.87040 -15.85212 -15.52253 -15.25860 -14.89124 -14.60850 -14.36379 -14.19264 -14.16549 -13.75165 -13.65415 -13.46298 -13.40746 -13.30287 -13.07847 -13.04123 -12.91075 -12.70839 -12.59660 -12.47351 -12.24463 -11.99129 -11.81670 -11.70450 -11.54434 -11.37946 -10.99726 -10.92691 -10.73392 -10.72313 -9.81575 -9.24816 -9.15210 -8.87198 -7.76533 -5.20595 1.01802 1.47246 1.48905 1.57421 1.58308 1.94035 2.19918 2.33368 2.49182 2.83458 3.33626 3.52947 3.66426 3.71799 3.78426 3.85993 3.98873 4.03461 4.08059 4.15426 4.25030 4.30220 4.36137 4.38495 4.45158 4.47123 4.48956 4.58788 4.69940 4.75791 4.76845 4.83536 4.88849 4.92746 4.99145 5.04285 5.06324 5.07831 5.13077 5.16528 5.25111 5.42528 5.47411 5.67825 5.82052 5.82369 6.06334 6.14363 6.33366 6.41026 6.60572 7.12505 7.13043 7.16491 7.79647 8.42984 9.25208 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.001884 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.091732 B =14861.374113 C =15067.623122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.016 4.016 3 N -0.540 5.540 4 C 0.192 3.808 5 N -0.554 5.554 6 H 0.434 0.566 7 C -0.012 4.012 8 C -0.057 4.057 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.125 3.875 13 C 0.046 3.954 14 N -0.529 5.529 15 C 0.091 3.909 16 H 0.044 0.956 17 C -0.112 4.112 18 C 0.152 3.848 19 N -0.626 5.626 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.947 5.947 24 Si 0.980 3.020 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.144 3.856 29 C 0.035 3.965 30 C 0.113 3.887 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.243 0.757 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.072 0.928 43 H -0.015 1.015 44 H 0.075 0.925 45 H 0.247 0.753 46 H 0.032 0.968 47 H 0.011 0.989 48 H 0.040 0.960 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.813 19.349 11.917 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 N -0.261 5.261 4 C -0.093 4.093 5 N -0.158 5.158 6 H 0.275 0.725 7 C -0.128 4.128 8 C -0.097 4.097 9 C 0.303 3.697 10 O -0.459 6.459 11 N -0.344 5.344 12 C 0.002 3.998 13 C -0.083 4.083 14 N -0.255 5.255 15 C -0.018 4.018 16 H 0.062 0.938 17 C -0.151 4.151 18 C 0.027 3.973 19 N -0.352 5.352 20 C -0.367 4.367 21 H 0.095 0.905 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.019 3.981 29 C -0.093 4.093 30 C -0.009 4.009 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.003 0.997 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.058 0.942 49 H 0.121 0.879 50 H 0.106 0.894 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.889 20.073 11.326 27.994 hybrid contribution -0.640 -1.280 -1.052 1.777 sum 15.249 18.792 10.273 26.291 Atomic orbital electron populations 1.20017 0.87552 1.02100 1.02625 1.20807 0.97204 0.88641 1.07753 1.70124 1.02293 1.31909 1.21790 1.25585 0.97411 0.82686 1.03574 1.43129 1.08070 1.08687 1.55944 0.72546 1.20418 0.84575 0.95942 1.11861 1.20162 1.06124 0.89956 0.93475 1.21048 0.76021 0.80690 0.91964 1.90726 1.53742 1.53535 1.47927 1.48291 1.66076 1.11577 1.08411 1.21539 0.95756 0.98782 0.83736 1.22411 0.96512 0.92663 0.96722 1.61962 1.33985 1.25164 1.04366 1.22365 0.89796 0.94047 0.95582 0.93797 1.22854 1.00153 0.94762 0.97283 1.21752 0.93206 0.99510 0.82867 1.44748 1.72057 1.13239 1.05162 1.19416 1.33607 0.94151 0.89533 0.90487 1.25613 1.01562 1.00019 0.98741 1.70036 1.48970 1.24013 1.16688 0.85062 0.77013 0.78828 0.78313 1.21108 1.21935 1.19801 1.21339 0.95641 0.85881 0.95278 1.22631 0.97128 0.99088 0.90434 1.22143 0.96428 0.92237 0.90070 0.89864 0.92441 0.91722 0.74093 0.84311 0.84506 0.90429 0.90080 0.90161 0.95033 0.89593 0.90933 0.99696 0.90719 0.94294 0.94988 0.97067 0.94210 0.87917 0.89428 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.13 71.23 0.72 -0.52 16 2 C -0.02 -0.35 7.09 41.39 0.29 -0.05 16 3 N -0.54 -12.82 11.25 -188.32 -2.12 -14.94 16 4 C 0.19 2.93 13.04 180.26 2.35 5.28 16 5 N -0.55 -6.97 6.15 -186.49 -1.15 -8.12 16 6 H 0.43 2.30 8.96 -92.71 -0.83 1.47 16 7 C -0.01 -0.19 5.73 40.95 0.23 0.04 16 8 C -0.06 -0.61 4.18 29.10 0.12 -0.49 16 9 C 0.51 9.74 7.70 87.66 0.68 10.41 16 10 O -0.58 -16.76 15.49 -3.03 -0.05 -16.81 16 11 N -0.61 -10.55 3.01 -817.89 -2.46 -13.01 16 12 C 0.13 2.68 6.60 86.35 0.57 3.25 16 13 C 0.05 1.09 5.45 86.38 0.47 1.57 16 14 N -0.53 -13.17 4.45 -863.02 -3.84 -17.02 16 15 C 0.09 2.92 2.65 46.10 0.12 3.04 16 16 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 17 C -0.11 -3.83 5.38 31.99 0.17 -3.66 16 18 C 0.15 7.33 5.89 86.86 0.51 7.85 16 19 N -0.63 -32.33 3.39 -691.99 -2.35 -34.68 16 20 C -0.24 -13.45 10.27 84.03 0.86 -12.58 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 23 N -0.95 -56.01 10.09 21.65 0.22 -55.79 16 24 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.14 5.94 5.70 86.73 0.49 6.44 16 29 C 0.04 0.60 5.47 86.39 0.47 1.08 16 30 C 0.11 1.31 6.51 86.36 0.56 1.87 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.18 7.89 -2.38 -0.02 1.16 16 34 H 0.24 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.14 0.90 7.55 -2.39 -0.02 0.88 16 36 H 0.14 0.50 8.00 -2.39 -0.02 0.48 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.96 7.06 -2.39 -0.02 1.94 16 39 H 0.08 2.10 6.78 -2.39 -0.02 2.08 16 40 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 2.41 7.93 -2.39 -0.02 2.39 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.07 4.12 5.87 -2.38 -0.01 4.10 16 45 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.03 1.34 7.70 -2.39 -0.02 1.32 16 47 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 48 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 1.60 6.80 -2.39 -0.02 1.59 16 50 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.13 0.48 6.02 -2.39 -0.01 0.47 16 Total: -1.00 -81.83 398.17 -0.51 -82.34 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.11 Total: 10.14 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 9.10 Total: 20.19 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -11.70 Total: -143.55 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -81.83 -0.51 -82.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046082419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.222 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds