Wall clock time and date at job start Wed Apr 1 2020 04:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47898 * 110.99887 * 2 1 4 4 C 1.53992 * 107.05851 * 145.84403 * 3 2 1 5 5 C 1.54591 * 105.13673 * 358.77648 * 4 3 2 6 6 C 1.48527 * 110.99801 * 117.39587 * 2 1 3 7 7 H 1.08995 * 110.66984 * 318.71159 * 6 2 1 8 8 C 1.50701 * 110.66714 * 81.67864 * 6 2 1 9 9 C 1.35359 * 126.38243 * 233.54348 * 8 6 2 10 10 C 1.41506 * 105.50517 * 179.97438 * 9 8 6 11 11 C 1.47710 * 126.52458 * 179.97438 * 10 9 8 12 12 O 1.21565 * 119.99413 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99715 * 180.02562 * 13 11 10 15 15 C 1.52993 * 110.64316 * 56.86054 * 14 13 11 16 16 C 1.55159 * 110.71790 * 180.02562 * 14 13 11 17 17 C 1.54903 * 101.58349 * 82.85925 * 16 14 13 18 18 N 1.47424 * 104.83424 * 37.00954 * 17 16 14 19 19 C 1.36934 * 125.65070 * 155.82613 * 18 17 16 20 20 H 1.08004 * 120.00101 * 341.97783 * 19 18 17 21 21 C 1.38812 * 120.00044 * 161.99165 * 19 18 17 22 22 N 1.31623 * 120.00301 * 156.26701 * 21 19 18 23 23 Si 1.86799 * 119.99813 * 336.25654 * 21 19 18 24 24 H 1.48501 * 109.46770 * 84.67205 * 23 21 19 25 25 H 1.48499 * 109.47346 * 204.67108 * 23 21 19 26 26 H 1.48497 * 109.47467 * 324.67347 * 23 21 19 27 27 C 1.47021 * 108.70302 * 335.87155 * 18 17 16 28 28 N 1.31814 * 106.95817 * 0.02562 * 10 9 8 29 29 N 1.28464 * 110.07522 * 359.71880 * 28 10 9 30 30 H 0.96999 * 124.88985 * 180.29287 * 29 28 10 31 31 H 1.08999 * 109.47297 * 60.12131 * 1 2 3 32 32 H 1.08996 * 109.47550 * 180.12723 * 1 2 3 33 33 H 1.09002 * 109.46698 * 300.12673 * 1 2 3 34 34 H 1.09000 * 109.91943 * 26.49170 * 3 2 1 35 35 H 1.09009 * 110.08297 * 265.29078 * 3 2 1 36 36 H 1.09002 * 110.30784 * 117.68999 * 4 3 2 37 37 H 1.08998 * 110.31215 * 239.85802 * 4 3 2 38 38 H 1.08998 * 110.72715 * 96.40397 * 5 4 3 39 39 H 1.09005 * 110.72162 * 219.68478 * 5 4 3 40 40 H 1.08003 * 127.25610 * 0.02562 * 9 8 6 41 41 H 0.97006 * 120.00503 * 0.02562 * 13 11 10 42 42 H 1.08998 * 109.47092 * 60.69702 * 15 14 13 43 43 H 1.08997 * 109.47748 * 180.70038 * 15 14 13 44 44 H 1.08999 * 109.47128 * 300.70299 * 15 14 13 45 45 H 1.09000 * 110.99938 * 200.93447 * 16 14 13 46 46 H 1.09004 * 111.00265 * 324.77890 * 16 14 13 47 47 H 1.09006 * 110.36419 * 155.84502 * 17 16 14 48 48 H 1.08993 * 110.36732 * 278.05530 * 17 16 14 49 49 H 0.96996 * 119.99977 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.88357 * 241.64625 * 27 18 17 51 51 H 1.08996 * 109.88633 * 120.47267 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0929 1.3153 6 6 2.0013 -0.6380 1.2311 7 1 1.4238 -0.3322 2.1034 8 6 2.0014 -2.1389 1.0949 9 6 1.4397 -3.0229 1.9524 10 6 1.6992 -4.3006 1.4022 11 6 1.2893 -5.6016 1.9691 12 8 0.6637 -5.6406 3.0107 13 7 1.6081 -6.7450 1.3310 14 6 1.2010 -8.0354 1.8930 15 6 -0.3158 -8.0850 2.0864 16 6 1.6782 -9.2028 0.9892 17 6 3.1423 -9.3835 1.4615 18 7 3.1019 -9.1450 2.9158 19 6 4.0024 -9.6253 3.8287 20 1 4.6455 -10.4532 3.5687 21 6 4.0886 -9.0484 5.0883 22 7 4.5691 -9.7422 6.0985 23 14 3.5229 -7.2875 5.3497 24 1 2.0576 -7.2689 5.5901 25 1 4.2246 -6.7114 6.5249 26 1 3.8367 -6.4822 4.1422 27 6 1.9339 -8.3069 3.2238 28 7 2.3772 -4.1090 0.2882 29 7 2.5569 -2.8522 0.0920 30 1 3.0261 -2.4706 -0.6664 31 1 -0.3634 0.5119 -0.8910 32 1 -0.3634 -1.0276 0.0023 33 1 -0.3633 0.5158 0.8889 34 1 1.2759 2.0561 0.4571 35 1 2.2117 1.7001 -1.0204 36 1 4.1470 1.6455 0.2023 37 1 3.2137 2.0429 1.6766 38 1 4.1115 -0.6540 0.6562 39 1 3.8123 -0.1198 2.3427 40 1 0.9052 -2.8002 2.8641 41 1 2.1070 -6.7138 0.4997 42 1 -0.8093 -7.9602 1.1226 43 1 -0.5961 -9.0467 2.5162 44 1 -0.6228 -7.2835 2.7583 45 1 1.0938 -10.1041 1.1743 46 1 1.6389 -8.9230 -0.0636 47 1 3.4859 -10.3967 1.2527 48 1 3.7908 -8.6557 0.9739 49 1 4.6296 -9.3389 6.9785 50 1 2.2594 -7.3655 3.6664 51 1 1.2712 -8.8326 3.9112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046330751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:41 Heat of formation + Delta-G solvation = 83.342093 kcal Electronic energy + Delta-G solvation = -31565.605255 eV Core-core repulsion = 27502.665211 eV Total energy + Delta-G solvation = -4062.940045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.80595 -39.83659 -39.32231 -37.38843 -33.98890 -32.72934 -32.42586 -31.96970 -31.67425 -30.25454 -28.94002 -28.14738 -26.05957 -25.92874 -24.39786 -23.54193 -22.38486 -21.40034 -21.18463 -20.56074 -19.94337 -19.20787 -17.91893 -17.04922 -16.64890 -16.54663 -16.16237 -15.79862 -15.40291 -14.78390 -14.62348 -14.39912 -14.27245 -14.07661 -13.77820 -13.65725 -13.45631 -13.27139 -12.95265 -12.92427 -12.66922 -12.26053 -12.19721 -11.99490 -11.94285 -11.87477 -11.64543 -11.43736 -11.24341 -11.20327 -11.01886 -10.92755 -10.74878 -10.39554 -10.30854 -9.85023 -9.59371 -9.39369 -9.21663 -9.17458 -9.04009 -8.63606 -8.48110 -6.94681 -5.85560 -3.13615 1.60463 1.97160 2.75469 3.33126 3.47454 3.55609 3.62623 3.65682 3.71313 4.07103 4.11877 4.41844 4.44221 4.55357 4.68301 4.72310 4.86185 4.91605 4.95868 5.01059 5.06486 5.19298 5.22427 5.33913 5.35427 5.38089 5.38975 5.48076 5.50151 5.55320 5.58150 5.63742 5.69597 5.90454 5.95824 6.06243 6.11909 6.23349 6.27564 6.30963 6.42392 6.44247 6.57031 6.61869 6.79443 6.83396 6.88613 7.05979 7.68716 7.80524 7.95608 8.40057 8.51982 8.93283 9.79916 10.28660 11.30494 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.002889 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.539292 B = 9689.748007 C =10578.791479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.131 3.869 7 H 0.084 0.916 8 C 0.031 3.969 9 C -0.173 4.173 10 C -0.005 4.005 11 C 0.602 3.398 12 O -0.526 6.526 13 N -0.699 5.699 14 C 0.159 3.841 15 C -0.153 4.153 16 C -0.132 4.132 17 C 0.131 3.869 18 N -0.610 5.610 19 C -0.242 4.242 20 H 0.093 0.907 21 C 0.023 3.977 22 N -0.908 5.908 23 Si 0.886 3.114 24 H -0.280 1.280 25 H -0.307 1.307 26 H -0.283 1.283 27 C 0.118 3.882 28 N -0.255 5.255 29 N -0.364 5.364 30 H 0.446 0.554 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.160 0.840 41 H 0.403 0.597 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.042 0.958 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 22.631 -16.649 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.092 4.092 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.022 3.978 7 H 0.102 0.898 8 C -0.096 4.096 9 C -0.202 4.202 10 C -0.166 4.166 11 C 0.386 3.614 12 O -0.400 6.400 13 N -0.350 5.350 14 C 0.073 3.927 15 C -0.212 4.212 16 C -0.171 4.171 17 C 0.006 3.994 18 N -0.337 5.337 19 C -0.369 4.369 20 H 0.110 0.890 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.235 1.235 26 H -0.210 1.210 27 C -0.008 4.008 28 N -0.091 5.091 29 N -0.078 5.078 30 H 0.290 0.710 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.238 0.762 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.436 21.642 -16.968 28.488 hybrid contribution -0.332 2.238 0.801 2.400 sum -7.768 23.880 -16.167 29.866 Atomic orbital electron populations 1.22536 0.86981 1.02796 1.01003 1.64623 1.08972 1.15162 1.35886 1.22878 0.95973 0.89297 1.01075 1.22425 0.97868 0.96799 0.99890 1.22562 0.94955 0.95595 1.02617 1.21244 0.96846 0.86817 0.92935 0.89848 1.20835 1.02694 0.94062 0.92023 1.21501 1.06073 0.90166 1.02456 1.21989 1.04302 0.95403 0.94913 1.16845 0.79225 0.81769 0.83556 1.90771 1.40368 1.86606 1.22272 1.45823 1.57157 1.04997 1.27011 1.21364 0.94573 0.81865 0.94857 1.22079 0.93415 1.03570 1.02109 1.23082 0.98665 0.97398 0.97925 1.21617 0.93005 0.98974 0.85828 1.44794 1.26632 1.60476 1.01826 1.18626 1.14732 1.11511 0.91988 0.88978 1.24929 0.99113 0.98066 0.95478 1.69865 1.49958 1.35593 0.99798 0.86935 0.78047 0.87372 0.75802 1.20655 1.23546 1.21008 1.22041 0.89460 0.95415 0.93850 1.73571 1.17741 0.98972 1.18850 1.43137 1.41445 1.02911 1.20299 0.70967 0.91059 0.90928 0.94860 0.93290 0.89938 0.90513 0.90983 0.90722 0.89900 0.82196 0.76152 0.92844 0.91413 0.90211 0.89522 0.90957 0.93094 0.95977 0.92818 0.94023 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.30 60.07 0.56 0.66 16 2 N -0.52 -3.67 5.23 -232.21 -1.22 -4.88 16 3 C 0.04 0.19 6.70 -2.76 -0.02 0.17 16 4 C -0.13 -0.65 6.93 -25.38 -0.18 -0.83 16 5 C -0.12 -0.79 6.49 -24.87 -0.16 -0.95 16 6 C 0.13 1.03 2.78 -66.94 -0.19 0.85 16 7 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 8 C 0.03 0.33 5.90 -82.21 -0.49 -0.16 16 9 C -0.17 -2.39 10.72 -39.36 -0.42 -2.82 16 10 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 11 C 0.60 11.41 7.04 -12.39 -0.09 11.32 16 12 O -0.53 -11.46 13.92 5.31 0.07 -11.39 16 13 N -0.70 -12.28 5.14 -46.88 -0.24 -12.52 16 14 C 0.16 2.95 0.81 -129.98 -0.10 2.84 16 15 C -0.15 -2.52 8.38 37.15 0.31 -2.21 16 16 C -0.13 -2.12 6.07 -24.58 -0.15 -2.27 16 17 C 0.13 2.63 7.21 -2.53 -0.02 2.61 16 18 N -0.61 -15.59 3.21 -170.08 -0.55 -16.14 16 19 C -0.24 -7.20 10.56 -15.06 -0.16 -7.36 16 20 H 0.09 2.85 8.06 -52.48 -0.42 2.42 16 21 C 0.02 0.71 5.43 -17.43 -0.09 0.61 16 22 N -0.91 -29.32 13.97 55.49 0.78 -28.55 16 23 Si 0.89 25.35 24.40 -169.99 -4.15 21.20 16 24 H -0.28 -8.03 6.84 56.52 0.39 -7.64 16 25 H -0.31 -8.74 7.11 56.52 0.40 -8.34 16 26 H -0.28 -8.21 6.88 56.52 0.39 -7.82 16 27 C 0.12 2.85 4.12 -3.06 -0.01 2.83 16 28 N -0.25 -3.55 11.92 33.42 0.40 -3.16 16 29 N -0.36 -3.90 6.83 33.50 0.23 -3.68 16 30 H 0.45 3.49 8.96 -190.44 -1.71 1.78 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.58 8.00 -51.93 -0.42 0.17 16 33 H 0.03 0.20 8.00 -51.93 -0.42 -0.21 16 34 H 0.05 0.24 7.73 -51.93 -0.40 -0.16 16 35 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.40 6.21 8.21 -40.82 -0.34 5.87 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 44 H 0.08 1.47 6.03 -51.93 -0.31 1.15 16 45 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 46 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.26 8.06 8.31 -40.82 -0.34 7.73 16 50 H 0.04 1.13 2.29 -51.93 -0.12 1.01 16 51 H 0.05 1.20 7.81 -51.93 -0.41 0.79 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -36.84 397.86 -10.07 -46.91 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.59 Total: 1.56 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.80 Total: 4.64 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.60 Total: -68.92 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.15 Total: 21.20 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.84 -10.07 -46.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046330751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.248 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds