Wall clock time and date at job start Wed Apr 1 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47898 * 110.99887 * 2 1 4 4 C 1.53992 * 107.05851 * 145.84403 * 3 2 1 5 5 C 1.54591 * 105.13673 * 358.77648 * 4 3 2 6 6 C 1.48527 * 110.99801 * 117.39587 * 2 1 3 7 7 H 1.08995 * 110.66984 * 318.71159 * 6 2 1 8 8 C 1.50701 * 110.66714 * 81.67864 * 6 2 1 9 9 C 1.35359 * 126.38243 * 233.54348 * 8 6 2 10 10 C 1.41506 * 105.50517 * 179.97438 * 9 8 6 11 11 C 1.47710 * 126.52458 * 179.97438 * 10 9 8 12 12 O 1.21565 * 119.99413 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99715 * 180.02562 * 13 11 10 15 15 C 1.52993 * 110.64316 * 56.86054 * 14 13 11 16 16 C 1.55159 * 110.71790 * 180.02562 * 14 13 11 17 17 C 1.54903 * 101.58349 * 82.85925 * 16 14 13 18 18 N 1.47424 * 104.83424 * 37.00954 * 17 16 14 19 19 C 1.36934 * 125.65070 * 155.82613 * 18 17 16 20 20 H 1.08004 * 120.00101 * 341.97783 * 19 18 17 21 21 C 1.38812 * 120.00044 * 161.99165 * 19 18 17 22 22 N 1.31623 * 120.00301 * 156.26701 * 21 19 18 23 23 Si 1.86799 * 119.99813 * 336.25654 * 21 19 18 24 24 H 1.48501 * 109.46770 * 84.67205 * 23 21 19 25 25 H 1.48499 * 109.47346 * 204.67108 * 23 21 19 26 26 H 1.48497 * 109.47467 * 324.67347 * 23 21 19 27 27 C 1.47021 * 108.70302 * 335.87155 * 18 17 16 28 28 N 1.31814 * 106.95817 * 0.02562 * 10 9 8 29 29 N 1.28464 * 110.07522 * 359.71880 * 28 10 9 30 30 H 0.96999 * 124.88985 * 180.29287 * 29 28 10 31 31 H 1.08999 * 109.47297 * 60.12131 * 1 2 3 32 32 H 1.08996 * 109.47550 * 180.12723 * 1 2 3 33 33 H 1.09002 * 109.46698 * 300.12673 * 1 2 3 34 34 H 1.09000 * 109.91943 * 26.49170 * 3 2 1 35 35 H 1.09009 * 110.08297 * 265.29078 * 3 2 1 36 36 H 1.09002 * 110.30784 * 117.68999 * 4 3 2 37 37 H 1.08998 * 110.31215 * 239.85802 * 4 3 2 38 38 H 1.08998 * 110.72715 * 96.40397 * 5 4 3 39 39 H 1.09005 * 110.72162 * 219.68478 * 5 4 3 40 40 H 1.08003 * 127.25610 * 0.02562 * 9 8 6 41 41 H 0.97006 * 120.00503 * 0.02562 * 13 11 10 42 42 H 1.08998 * 109.47092 * 60.69702 * 15 14 13 43 43 H 1.08997 * 109.47748 * 180.70038 * 15 14 13 44 44 H 1.08999 * 109.47128 * 300.70299 * 15 14 13 45 45 H 1.09000 * 110.99938 * 200.93447 * 16 14 13 46 46 H 1.09004 * 111.00265 * 324.77890 * 16 14 13 47 47 H 1.09006 * 110.36419 * 155.84502 * 17 16 14 48 48 H 1.08993 * 110.36732 * 278.05530 * 17 16 14 49 49 H 0.96996 * 119.99977 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.88357 * 241.64625 * 27 18 17 51 51 H 1.08996 * 109.88633 * 120.47267 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0929 1.3153 6 6 2.0013 -0.6380 1.2311 7 1 1.4238 -0.3322 2.1034 8 6 2.0014 -2.1389 1.0949 9 6 1.4397 -3.0229 1.9524 10 6 1.6992 -4.3006 1.4022 11 6 1.2893 -5.6016 1.9691 12 8 0.6637 -5.6406 3.0107 13 7 1.6081 -6.7450 1.3310 14 6 1.2010 -8.0354 1.8930 15 6 -0.3158 -8.0850 2.0864 16 6 1.6782 -9.2028 0.9892 17 6 3.1423 -9.3835 1.4615 18 7 3.1019 -9.1450 2.9158 19 6 4.0024 -9.6253 3.8287 20 1 4.6455 -10.4532 3.5687 21 6 4.0886 -9.0484 5.0883 22 7 4.5691 -9.7422 6.0985 23 14 3.5229 -7.2875 5.3497 24 1 2.0576 -7.2689 5.5901 25 1 4.2246 -6.7114 6.5249 26 1 3.8367 -6.4822 4.1422 27 6 1.9339 -8.3069 3.2238 28 7 2.3772 -4.1090 0.2882 29 7 2.5569 -2.8522 0.0920 30 1 3.0261 -2.4706 -0.6664 31 1 -0.3634 0.5119 -0.8910 32 1 -0.3634 -1.0276 0.0023 33 1 -0.3633 0.5158 0.8889 34 1 1.2759 2.0561 0.4571 35 1 2.2117 1.7001 -1.0204 36 1 4.1470 1.6455 0.2023 37 1 3.2137 2.0429 1.6766 38 1 4.1115 -0.6540 0.6562 39 1 3.8123 -0.1198 2.3427 40 1 0.9052 -2.8002 2.8641 41 1 2.1070 -6.7138 0.4997 42 1 -0.8093 -7.9602 1.1226 43 1 -0.5961 -9.0467 2.5162 44 1 -0.6228 -7.2835 2.7583 45 1 1.0938 -10.1041 1.1743 46 1 1.6389 -8.9230 -0.0636 47 1 3.4859 -10.3967 1.2527 48 1 3.7908 -8.6557 0.9739 49 1 4.6296 -9.3389 6.9785 50 1 2.2594 -7.3655 3.6664 51 1 1.2712 -8.8326 3.9112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046330751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:40 Heat of formation + Delta-G solvation = 53.876568 kcal Electronic energy + Delta-G solvation = -31566.882976 eV Core-core repulsion = 27502.665211 eV Total energy + Delta-G solvation = -4064.217766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.82110 -41.30488 -39.90030 -39.00716 -35.78277 -34.14014 -33.30007 -33.06731 -32.86861 -31.77061 -30.59035 -28.85261 -27.78132 -26.56644 -25.86964 -25.17844 -23.18421 -22.37833 -22.08804 -21.82495 -21.26508 -20.69836 -19.02794 -18.74552 -18.16946 -17.82481 -17.05276 -16.86523 -16.57532 -16.14968 -15.96568 -15.65874 -15.33716 -15.17727 -15.13063 -14.85480 -14.73091 -14.53702 -14.31069 -14.21871 -14.10825 -13.42545 -13.33465 -13.27935 -13.16003 -12.88904 -12.72164 -12.58801 -12.53802 -12.46602 -12.17959 -12.12429 -12.04165 -11.96325 -11.81163 -11.54220 -11.47216 -10.98999 -10.79465 -10.52255 -10.12856 -10.09505 -9.59038 -9.10113 -8.26647 -5.47477 0.44371 0.95796 1.22135 1.28300 1.36521 1.77938 2.13556 2.30600 2.31955 2.85593 2.95827 3.26684 3.31555 3.49701 3.52321 3.60008 3.81404 3.87709 4.01697 4.04474 4.08001 4.25255 4.36518 4.42928 4.45574 4.48198 4.53172 4.54438 4.63550 4.71362 4.73261 4.79420 4.80704 4.89712 4.90169 4.97541 4.99238 5.00680 5.04075 5.08454 5.18220 5.24918 5.28118 5.30493 5.53899 5.65136 5.74122 5.89884 6.03163 6.04409 6.44403 6.71160 6.81815 7.14318 7.49607 8.07395 8.93659 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.002889 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.539292 B = 9689.748007 C =10578.791479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.035 3.965 4 C -0.125 4.125 5 C -0.120 4.120 6 C 0.130 3.870 7 H 0.087 0.913 8 C 0.055 3.945 9 C -0.197 4.197 10 C -0.036 4.036 11 C 0.595 3.405 12 O -0.564 6.564 13 N -0.692 5.692 14 C 0.164 3.836 15 C -0.147 4.147 16 C -0.112 4.112 17 C 0.122 3.878 18 N -0.627 5.627 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.027 4.027 22 N -0.947 5.947 23 Si 0.944 3.056 24 H -0.291 1.291 25 H -0.307 1.307 26 H -0.293 1.293 27 C 0.111 3.889 28 N -0.256 5.256 29 N -0.345 5.345 30 H 0.460 0.540 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.415 0.585 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.262 0.738 50 H 0.014 0.986 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 24.597 -19.926 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.092 4.092 4 C -0.163 4.163 5 C -0.158 4.158 6 C 0.021 3.979 7 H 0.105 0.895 8 C -0.072 4.072 9 C -0.226 4.226 10 C -0.195 4.195 11 C 0.381 3.619 12 O -0.442 6.442 13 N -0.343 5.343 14 C 0.078 3.922 15 C -0.205 4.205 16 C -0.150 4.150 17 C -0.002 4.002 18 N -0.354 5.354 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.222 4.222 22 N -0.595 5.595 23 Si 0.778 3.222 24 H -0.219 1.219 25 H -0.236 1.236 26 H -0.221 1.221 27 C -0.014 4.014 28 N -0.094 5.094 29 N -0.062 5.062 30 H 0.308 0.692 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.175 0.825 41 H 0.252 0.748 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.137 0.863 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.954 23.623 -20.327 32.164 hybrid contribution -0.143 1.655 1.704 2.380 sum -8.097 25.278 -18.623 32.425 Atomic orbital electron populations 1.22532 0.86886 1.01977 1.01878 1.64604 1.09133 1.16367 1.35041 1.22943 0.96184 0.88244 1.01803 1.22412 0.98070 0.95593 1.00262 1.22583 0.93761 0.96775 1.02717 1.21319 0.98127 0.84815 0.93674 0.89531 1.21115 1.00353 0.95216 0.90548 1.21630 1.07438 0.90149 1.03386 1.21743 1.06488 0.94866 0.96410 1.17269 0.78572 0.82928 0.83134 1.90745 1.42128 1.87338 1.23958 1.45759 1.57004 1.04401 1.27178 1.21316 0.95164 0.83246 0.92522 1.22023 0.91941 1.03099 1.03422 1.23075 0.95317 0.96805 0.99761 1.21919 0.96267 0.99601 0.82459 1.44976 1.26244 1.60218 1.03971 1.18716 1.13841 1.10199 0.92525 0.90680 1.25365 1.00734 1.00263 0.95884 1.69933 1.52667 1.36637 1.00215 0.86003 0.76738 0.84521 0.74911 1.21901 1.23622 1.22108 1.22076 0.89074 0.93340 0.96935 1.73486 1.17489 1.00367 1.18063 1.43201 1.40353 1.02125 1.20488 0.69159 0.89871 0.92582 0.94334 0.92594 0.89047 0.89468 0.90193 0.90789 0.90030 0.82464 0.74767 0.89520 0.90611 0.92690 0.87974 0.86295 0.92222 0.95088 0.92871 0.96871 0.95767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.30 127.69 1.19 1.37 16 2 N -0.53 -6.14 5.23 -888.59 -4.65 -10.79 16 3 C 0.04 0.27 6.70 86.45 0.58 0.85 16 4 C -0.13 -0.88 6.93 31.47 0.22 -0.66 16 5 C -0.12 -1.32 6.49 31.80 0.21 -1.12 16 6 C 0.13 1.81 2.78 44.52 0.12 1.94 16 7 H 0.09 1.19 7.96 -2.39 -0.02 1.17 16 8 C 0.06 1.12 5.90 41.40 0.24 1.37 16 9 C -0.20 -5.44 10.72 22.41 0.24 -5.20 16 10 C -0.04 -1.15 7.13 42.46 0.30 -0.85 16 11 C 0.60 22.60 7.04 86.75 0.61 23.21 16 12 O -0.56 -25.31 13.92 -3.92 -0.05 -25.37 16 13 N -0.69 -23.33 5.14 -420.52 -2.16 -25.49 16 14 C 0.16 5.79 0.81 4.79 0.00 5.79 16 15 C -0.15 -4.57 8.38 71.98 0.60 -3.96 16 16 C -0.11 -3.15 6.07 31.98 0.19 -2.95 16 17 C 0.12 4.59 7.21 86.85 0.63 5.21 16 18 N -0.63 -31.89 3.21 -692.01 -2.22 -34.11 16 19 C -0.22 -13.54 10.56 84.03 0.89 -12.65 16 20 H 0.08 4.72 8.06 -2.91 -0.02 4.70 16 21 C -0.03 -1.74 5.43 84.86 0.46 -1.28 16 22 N -0.95 -62.82 13.97 21.65 0.30 -62.52 16 23 Si 0.94 55.01 24.40 68.60 1.67 56.69 16 24 H -0.29 -17.25 6.84 99.48 0.68 -16.57 16 25 H -0.31 -17.61 7.11 99.48 0.71 -16.91 16 26 H -0.29 -17.28 6.88 99.48 0.68 -16.60 16 27 C 0.11 5.41 4.12 86.73 0.36 5.77 16 28 N -0.26 -6.79 11.92 -48.17 -0.57 -7.37 16 29 N -0.35 -6.78 6.83 -47.93 -0.33 -7.11 16 30 H 0.46 6.04 8.96 -220.00 -1.97 4.07 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.83 8.00 -2.39 -0.02 0.81 16 33 H 0.04 0.40 8.00 -2.39 -0.02 0.38 16 34 H 0.06 0.38 7.73 -2.39 -0.02 0.36 16 35 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 0.83 8.05 -2.39 -0.02 0.81 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.42 11.78 8.21 -92.70 -0.76 11.01 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 44 H 0.05 2.02 6.03 -2.39 -0.01 2.00 16 45 H 0.10 2.65 8.05 -2.39 -0.02 2.63 16 46 H 0.12 2.35 8.07 -2.39 -0.02 2.33 16 47 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.26 16.61 8.31 -92.71 -0.77 15.84 16 50 H 0.01 0.76 2.29 -2.39 -0.01 0.75 16 51 H 0.02 1.27 7.81 -2.39 -0.02 1.25 16 Total: -1.00 -83.27 397.86 -2.99 -86.26 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -1.83 Total: 12.97 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.85 Total: 16.83 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -9.63 Total: -147.38 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.67 Total: 56.69 kcal Total: -83.27 -2.99 -86.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046330751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.136 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds