Wall clock time and date at job start Wed Apr 1 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36594 * 126.58237 * 2 1 4 4 C 1.47529 * 125.76568 * 0.03784 * 3 2 1 5 5 O 1.21593 * 120.00424 * 359.71559 * 4 3 2 6 6 N 1.34783 * 119.99545 * 179.71854 * 4 3 2 7 7 C 1.46498 * 119.99646 * 180.27533 * 6 4 3 8 8 H 1.08996 * 109.32462 * 49.65708 * 7 6 4 9 9 C 1.53028 * 109.32371 * 290.18218 * 7 6 4 10 10 C 1.53970 * 108.83432 * 295.14535 * 9 7 6 11 11 H 1.09001 * 113.67852 * 168.56257 * 10 9 7 12 12 C 1.55427 * 106.41504 * 293.82900 * 10 9 7 13 13 C 1.55170 * 100.35630 * 73.36985 * 12 10 9 14 14 H 1.08995 * 112.48612 * 163.34464 * 13 12 10 15 15 C 1.52994 * 109.32178 * 169.29731 * 7 6 4 16 16 N 1.47793 * 104.25115 * 40.54886 * 13 12 10 17 17 C 1.36936 * 125.85452 * 153.51007 * 16 13 12 18 18 H 1.07999 * 120.00299 * 152.19380 * 17 16 13 19 19 C 1.38812 * 120.00026 * 332.19375 * 17 16 13 20 20 N 1.31623 * 120.00387 * 157.63238 * 19 17 16 21 21 Si 1.86801 * 119.99955 * 337.63668 * 19 17 16 22 22 H 1.48500 * 109.47538 * 91.26294 * 21 19 17 23 23 H 1.48502 * 109.47229 * 211.26314 * 21 19 17 24 24 H 1.48505 * 109.47105 * 331.26100 * 21 19 17 25 25 C 1.47077 * 108.29235 * 333.54106 * 16 13 12 26 26 N 1.34390 * 108.45925 * 179.77564 * 3 2 1 27 27 N 1.28762 * 109.52416 * 0.22742 * 26 3 2 28 28 N 1.34811 * 126.57643 * 180.16885 * 2 1 3 29 29 C 1.46493 * 126.59777 * 359.97438 * 28 2 1 30 30 C 1.53003 * 109.47085 * 120.25063 * 29 28 2 31 31 C 1.53003 * 109.47526 * 240.24829 * 29 28 2 32 32 H 1.09005 * 109.47354 * 90.02269 * 1 2 3 33 33 H 1.09002 * 109.47390 * 210.02611 * 1 2 3 34 34 H 1.09006 * 109.47440 * 330.02633 * 1 2 3 35 35 H 0.97001 * 119.99669 * 359.97438 * 6 4 3 36 36 H 1.08995 * 109.58255 * 54.95141 * 9 7 6 37 37 H 1.09003 * 109.57602 * 175.34808 * 9 7 6 38 38 H 1.08999 * 111.23572 * 315.59384 * 12 10 9 39 39 H 1.09000 * 111.23872 * 191.14636 * 12 10 9 40 40 H 1.09001 * 109.52985 * 185.05801 * 15 7 6 41 41 H 1.09005 * 109.53302 * 305.28790 * 15 7 6 42 42 H 0.97000 * 120.00453 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.97785 * 241.74310 * 25 16 13 44 44 H 1.09003 * 110.01399 * 120.47088 * 25 16 13 45 45 H 1.09002 * 109.47460 * 0.25252 * 29 28 2 46 46 H 1.09004 * 109.46786 * 299.99662 * 30 29 28 47 47 H 1.08993 * 109.47043 * 59.99882 * 30 29 28 48 48 H 1.09002 * 109.46957 * 180.02562 * 30 29 28 49 49 H 1.08995 * 109.46636 * 60.00363 * 31 29 28 50 50 H 1.09000 * 109.47208 * 180.02562 * 31 29 28 51 51 H 1.08993 * 109.47054 * 300.00394 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7628 -0.0037 6 7 2.7817 3.4987 0.0064 7 6 2.3375 4.8947 0.0133 8 1 1.5932 5.0325 0.7975 9 6 1.7100 5.2331 -1.3407 10 6 2.7963 5.1436 -2.4283 11 1 2.4023 5.1750 -3.4441 12 6 3.8113 6.2822 -2.1301 13 6 4.5282 5.6976 -0.8842 14 1 5.4736 6.1977 -0.6744 15 6 3.5357 5.8059 0.2868 16 7 4.6908 4.2626 -1.1980 17 6 5.6638 3.4379 -0.6998 18 1 5.4761 2.3789 -0.6018 19 6 6.8916 3.9630 -0.3207 20 7 7.6490 3.3127 0.5372 21 14 7.4688 5.5928 -1.0278 22 1 7.0313 6.7003 -0.1406 23 1 8.9506 5.5929 -1.1256 24 1 6.8836 5.7808 -2.3797 25 6 3.6288 3.8723 -2.1377 26 7 3.5983 0.6788 0.0050 27 7 3.6298 -0.6084 0.0033 28 7 2.3103 -1.0826 -0.0032 29 6 1.8863 -2.4848 -0.0068 30 6 2.4338 -3.1800 -1.2550 31 6 2.4243 -3.1837 1.2435 32 1 -0.3634 -0.0004 -1.0277 33 1 -0.3634 -0.8897 0.5142 34 1 -0.3634 0.8903 0.5134 35 1 3.7293 3.2912 0.0104 36 1 0.9128 4.5234 -1.5615 37 1 1.3040 6.2443 -1.3126 38 1 3.2997 7.2143 -1.8900 39 1 4.5068 6.4180 -2.9582 40 1 3.1952 6.8370 0.3819 41 1 4.0259 5.4962 1.2099 42 1 8.5068 3.6799 0.8024 43 1 2.9958 3.1075 -1.6875 44 1 4.0680 3.4956 -3.0615 45 1 0.7974 -2.5352 -0.0111 46 1 2.0505 -2.6822 -2.1457 47 1 3.5226 -3.1297 -1.2507 48 1 2.1179 -4.2232 -1.2579 49 1 2.0342 -2.6884 2.1326 50 1 2.1091 -4.2271 1.2405 51 1 3.5130 -3.1333 1.2477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047172625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:07 Heat of formation + Delta-G solvation = 137.555996 kcal Electronic energy + Delta-G solvation = -33514.777028 eV Core-core repulsion = 29454.187875 eV Total energy + Delta-G solvation = -4060.589153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.98246 -40.76969 -37.96667 -36.34460 -33.74643 -33.20669 -32.68383 -31.33681 -30.70127 -30.50903 -28.41069 -27.59902 -27.28528 -25.40438 -23.78066 -23.13143 -22.85745 -21.37908 -20.18960 -19.93451 -19.62055 -19.02823 -17.43074 -16.69125 -16.17614 -15.98187 -15.81904 -15.18182 -14.63671 -14.56703 -14.22251 -13.94830 -13.54727 -13.32576 -13.23541 -13.09709 -12.99743 -12.95602 -12.72252 -12.50500 -12.46025 -12.35857 -12.13530 -12.02681 -11.75262 -11.73035 -11.72215 -11.31390 -11.27046 -11.15723 -10.91090 -10.67766 -10.63926 -10.23543 -10.06687 -9.92859 -9.73235 -9.50565 -9.38621 -9.17810 -8.78077 -8.47055 -7.72099 -6.89343 -5.93217 -3.30663 1.42881 2.21611 2.25307 3.31032 3.49184 3.53095 3.86336 3.88382 4.23026 4.42815 4.55049 4.55181 4.64979 4.83015 4.92962 5.09706 5.13462 5.17589 5.23327 5.29289 5.36373 5.38171 5.42879 5.43420 5.45704 5.57131 5.72018 5.74482 5.77870 5.80008 5.86479 5.93826 5.96062 5.98078 6.09395 6.15025 6.22294 6.30548 6.41478 6.49858 6.50263 6.66545 6.69067 6.71790 6.87335 6.91771 6.99183 7.30831 7.85163 8.29886 8.39534 8.61489 8.93684 9.03674 9.70574 10.21150 11.21435 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.004347 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.145187 B = 6439.819427 C = 7875.345455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.108 3.892 3 C -0.100 4.100 4 C 0.586 3.414 5 O -0.568 6.568 6 N -0.681 5.681 7 C 0.162 3.838 8 H 0.067 0.933 9 C -0.122 4.122 10 C -0.103 4.103 11 H 0.081 0.919 12 C -0.132 4.132 13 C 0.135 3.865 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.597 5.597 17 C -0.265 4.265 18 H 0.113 0.887 19 C 0.036 3.964 20 N -0.893 5.893 21 Si 0.873 3.127 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.106 3.894 26 N -0.173 5.173 27 N -0.066 5.066 28 N -0.365 5.365 29 C 0.146 3.854 30 C -0.162 4.162 31 C -0.163 4.163 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.443 0.557 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.079 0.921 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.810 -7.506 -1.612 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 C -0.240 4.240 4 C 0.370 3.630 5 O -0.449 6.449 6 N -0.347 5.347 7 C 0.057 3.943 8 H 0.085 0.915 9 C -0.161 4.161 10 C -0.122 4.122 11 H 0.099 0.901 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.090 0.910 15 C -0.180 4.180 16 N -0.324 5.324 17 C -0.392 4.392 18 H 0.130 0.870 19 C -0.164 4.164 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.196 1.196 25 C -0.019 4.019 26 N -0.046 5.046 27 N -0.045 5.045 28 N -0.152 5.152 29 C 0.044 3.956 30 C -0.220 4.220 31 C -0.221 4.221 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.301 0.699 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.122 0.878 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.097 0.903 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.791 -7.863 -1.479 16.816 hybrid contribution 0.078 1.004 -0.467 1.110 sum -14.713 -6.859 -1.946 16.349 Atomic orbital electron populations 1.20632 0.85333 1.04798 1.04130 1.21809 0.95870 0.86675 0.98599 1.21371 0.89103 0.95579 1.17911 1.16878 0.85743 0.83058 0.77306 1.90647 1.16412 1.83967 1.53902 1.47691 1.14002 1.04362 1.68629 1.20663 0.95642 0.81372 0.96660 0.91461 1.22080 0.97821 1.01297 0.94888 1.22538 0.95524 0.96387 0.97733 0.90064 1.23068 0.98083 0.97185 0.98741 1.21947 0.95834 0.86941 0.92393 0.91010 1.22444 0.96385 0.97992 1.01142 1.45265 1.31950 1.05807 1.49386 1.18940 0.90822 0.93083 1.36317 0.87005 1.25242 0.95937 0.97265 0.97983 1.69852 1.12786 1.39863 1.30958 0.87048 0.76828 0.84870 0.80816 1.21347 1.23205 1.19640 1.22362 0.90849 0.96128 0.92538 1.74913 1.18336 1.03372 1.08005 1.82051 0.95587 1.03823 1.23025 1.50673 1.06740 1.06787 1.51036 1.21519 1.00041 0.75927 0.98075 1.22146 1.03450 1.00489 0.95917 1.22156 1.03531 1.00484 0.95916 0.89586 0.91385 0.87087 0.69933 0.90849 0.91764 0.91390 0.91899 0.91516 0.91041 0.92727 0.91619 0.96414 0.87754 0.91817 0.90536 0.90271 0.91827 0.90267 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.40 36.01 0.34 -0.64 16 2 C 0.11 1.63 7.02 -81.88 -0.57 1.05 16 3 C -0.10 -1.91 6.94 -83.55 -0.58 -2.49 16 4 C 0.59 11.51 6.10 -12.47 -0.08 11.44 16 5 O -0.57 -10.96 13.45 5.28 0.07 -10.89 16 6 N -0.68 -13.87 2.76 -54.84 -0.15 -14.02 16 7 C 0.16 2.92 2.72 -67.92 -0.18 2.73 16 8 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 9 C -0.12 -1.98 5.15 -26.21 -0.14 -2.12 16 10 C -0.10 -1.77 4.33 -87.92 -0.38 -2.15 16 11 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.13 -2.34 6.18 -24.29 -0.15 -2.49 16 13 C 0.13 2.83 3.10 -65.61 -0.20 2.63 16 14 H 0.07 1.65 3.00 -51.93 -0.16 1.50 16 15 C -0.14 -2.59 5.42 -26.27 -0.14 -2.73 16 16 N -0.60 -13.95 1.43 -161.37 -0.23 -14.18 16 17 C -0.27 -7.25 8.78 -15.06 -0.13 -7.38 16 18 H 0.11 3.30 7.31 -52.49 -0.38 2.91 16 19 C 0.04 1.04 5.43 -17.43 -0.09 0.95 16 20 N -0.89 -27.03 13.97 55.49 0.78 -26.26 16 21 Si 0.87 22.12 24.91 -169.99 -4.23 17.89 16 22 H -0.28 -6.96 6.55 56.52 0.37 -6.59 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.11 2.22 5.76 -2.82 -0.02 2.20 16 26 N -0.17 -3.69 11.42 32.85 0.38 -3.31 16 27 N -0.07 -1.23 13.67 60.35 0.82 -0.40 16 28 N -0.37 -5.19 3.28 -50.41 -0.17 -5.35 16 29 C 0.15 1.35 3.68 -67.93 -0.25 1.10 16 30 C -0.16 -1.36 9.47 37.16 0.35 -1.01 16 31 C -0.16 -1.36 9.47 37.16 0.35 -1.01 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.52 7.20 -51.93 -0.37 0.15 16 34 H 0.11 1.38 6.43 -51.93 -0.33 1.05 16 35 H 0.44 10.15 3.53 -40.82 -0.14 10.01 16 36 H 0.07 1.24 6.81 -51.93 -0.35 0.89 16 37 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 38 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 1.42 3.95 -58.40 -0.23 1.19 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.68 6.79 -51.93 -0.35 0.33 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -32.85 379.23 -6.69 -39.54 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.79 Total: 11.21 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.88 Total: 0.07 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: 1.43 Total: -63.53 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.23 Total: 17.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.85 -6.69 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047172625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.092 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds