Wall clock time and date at job start Wed Apr 1 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36594 * 126.58237 * 2 1 4 4 C 1.47529 * 125.76568 * 0.03784 * 3 2 1 5 5 O 1.21593 * 120.00424 * 359.71559 * 4 3 2 6 6 N 1.34783 * 119.99545 * 179.71854 * 4 3 2 7 7 C 1.46498 * 119.99646 * 180.27533 * 6 4 3 8 8 H 1.08996 * 109.32462 * 49.65708 * 7 6 4 9 9 C 1.53028 * 109.32371 * 290.18218 * 7 6 4 10 10 C 1.53970 * 108.83432 * 295.14535 * 9 7 6 11 11 H 1.09001 * 113.67852 * 168.56257 * 10 9 7 12 12 C 1.55427 * 106.41504 * 293.82900 * 10 9 7 13 13 C 1.55170 * 100.35630 * 73.36985 * 12 10 9 14 14 H 1.08995 * 112.48612 * 163.34464 * 13 12 10 15 15 C 1.52994 * 109.32178 * 169.29731 * 7 6 4 16 16 N 1.47793 * 104.25115 * 40.54886 * 13 12 10 17 17 C 1.36936 * 125.85452 * 153.51007 * 16 13 12 18 18 H 1.07999 * 120.00299 * 152.19380 * 17 16 13 19 19 C 1.38812 * 120.00026 * 332.19375 * 17 16 13 20 20 N 1.31623 * 120.00387 * 157.63238 * 19 17 16 21 21 Si 1.86801 * 119.99955 * 337.63668 * 19 17 16 22 22 H 1.48500 * 109.47538 * 91.26294 * 21 19 17 23 23 H 1.48502 * 109.47229 * 211.26314 * 21 19 17 24 24 H 1.48505 * 109.47105 * 331.26100 * 21 19 17 25 25 C 1.47077 * 108.29235 * 333.54106 * 16 13 12 26 26 N 1.34390 * 108.45925 * 179.77564 * 3 2 1 27 27 N 1.28762 * 109.52416 * 0.22742 * 26 3 2 28 28 N 1.34811 * 126.57643 * 180.16885 * 2 1 3 29 29 C 1.46493 * 126.59777 * 359.97438 * 28 2 1 30 30 C 1.53003 * 109.47085 * 120.25063 * 29 28 2 31 31 C 1.53003 * 109.47526 * 240.24829 * 29 28 2 32 32 H 1.09005 * 109.47354 * 90.02269 * 1 2 3 33 33 H 1.09002 * 109.47390 * 210.02611 * 1 2 3 34 34 H 1.09006 * 109.47440 * 330.02633 * 1 2 3 35 35 H 0.97001 * 119.99669 * 359.97438 * 6 4 3 36 36 H 1.08995 * 109.58255 * 54.95141 * 9 7 6 37 37 H 1.09003 * 109.57602 * 175.34808 * 9 7 6 38 38 H 1.08999 * 111.23572 * 315.59384 * 12 10 9 39 39 H 1.09000 * 111.23872 * 191.14636 * 12 10 9 40 40 H 1.09001 * 109.52985 * 185.05801 * 15 7 6 41 41 H 1.09005 * 109.53302 * 305.28790 * 15 7 6 42 42 H 0.97000 * 120.00453 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.97785 * 241.74310 * 25 16 13 44 44 H 1.09003 * 110.01399 * 120.47088 * 25 16 13 45 45 H 1.09002 * 109.47460 * 0.25252 * 29 28 2 46 46 H 1.09004 * 109.46786 * 299.99662 * 30 29 28 47 47 H 1.08993 * 109.47043 * 59.99882 * 30 29 28 48 48 H 1.09002 * 109.46957 * 180.02562 * 30 29 28 49 49 H 1.08995 * 109.46636 * 60.00363 * 31 29 28 50 50 H 1.09000 * 109.47208 * 180.02562 * 31 29 28 51 51 H 1.08993 * 109.47054 * 300.00394 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7628 -0.0037 6 7 2.7817 3.4987 0.0064 7 6 2.3375 4.8947 0.0133 8 1 1.5932 5.0325 0.7975 9 6 1.7100 5.2331 -1.3407 10 6 2.7963 5.1436 -2.4283 11 1 2.4023 5.1750 -3.4441 12 6 3.8113 6.2822 -2.1301 13 6 4.5282 5.6976 -0.8842 14 1 5.4736 6.1977 -0.6744 15 6 3.5357 5.8059 0.2868 16 7 4.6908 4.2626 -1.1980 17 6 5.6638 3.4379 -0.6998 18 1 5.4761 2.3789 -0.6018 19 6 6.8916 3.9630 -0.3207 20 7 7.6490 3.3127 0.5372 21 14 7.4688 5.5928 -1.0278 22 1 7.0313 6.7003 -0.1406 23 1 8.9506 5.5929 -1.1256 24 1 6.8836 5.7808 -2.3797 25 6 3.6288 3.8723 -2.1377 26 7 3.5983 0.6788 0.0050 27 7 3.6298 -0.6084 0.0033 28 7 2.3103 -1.0826 -0.0032 29 6 1.8863 -2.4848 -0.0068 30 6 2.4338 -3.1800 -1.2550 31 6 2.4243 -3.1837 1.2435 32 1 -0.3634 -0.0004 -1.0277 33 1 -0.3634 -0.8897 0.5142 34 1 -0.3634 0.8903 0.5134 35 1 3.7293 3.2912 0.0104 36 1 0.9128 4.5234 -1.5615 37 1 1.3040 6.2443 -1.3126 38 1 3.2997 7.2143 -1.8900 39 1 4.5068 6.4180 -2.9582 40 1 3.1952 6.8370 0.3819 41 1 4.0259 5.4962 1.2099 42 1 8.5068 3.6799 0.8024 43 1 2.9958 3.1075 -1.6875 44 1 4.0680 3.4956 -3.0615 45 1 0.7974 -2.5352 -0.0111 46 1 2.0505 -2.6822 -2.1457 47 1 3.5226 -3.1297 -1.2507 48 1 2.1179 -4.2232 -1.2579 49 1 2.0342 -2.6884 2.1326 50 1 2.1091 -4.2271 1.2405 51 1 3.5130 -3.1333 1.2477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047172625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:06 Heat of formation + Delta-G solvation = 115.601223 kcal Electronic energy + Delta-G solvation = -33515.729058 eV Core-core repulsion = 29454.187875 eV Total energy + Delta-G solvation = -4061.541184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.27826 -42.26890 -39.45098 -37.31303 -35.46207 -34.79612 -33.85667 -33.11758 -32.27019 -31.77551 -29.82788 -28.49344 -28.28236 -27.17712 -24.96512 -24.62161 -24.38219 -22.79701 -21.72411 -21.30381 -20.97167 -20.47540 -18.77357 -18.34697 -17.77448 -17.21326 -17.17246 -16.74963 -16.17418 -15.79407 -15.43799 -15.21368 -15.02180 -14.83678 -14.74758 -14.46299 -14.13278 -14.00569 -13.91972 -13.90512 -13.73054 -13.57074 -13.32171 -13.19812 -13.18853 -12.92641 -12.87770 -12.82684 -12.58881 -12.51906 -12.34921 -12.28548 -12.01388 -11.81515 -11.61232 -11.45396 -11.17096 -11.06602 -10.94638 -10.79512 -10.47655 -10.10414 -9.24875 -8.80690 -8.12271 -5.44712 0.22545 0.79308 1.18514 1.26613 1.40003 1.49655 2.40529 2.43678 2.50559 3.08929 3.32178 3.33746 3.41233 3.67070 3.72008 3.82166 3.85839 3.90046 3.92825 4.00414 4.19284 4.23983 4.31774 4.36771 4.48265 4.58966 4.61820 4.65802 4.68959 4.73526 4.74624 4.78405 4.79769 4.85856 4.88971 4.97308 5.03036 5.08077 5.14437 5.17590 5.19387 5.22204 5.25223 5.40200 5.43582 5.49246 5.67939 5.82825 5.89665 6.26690 6.83226 6.87518 7.15936 7.44577 7.59209 8.17440 9.06909 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.004347 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.145187 B = 6439.819427 C = 7875.345455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.125 3.875 3 C -0.138 4.138 4 C 0.585 3.415 5 O -0.568 6.568 6 N -0.697 5.697 7 C 0.154 3.846 8 H 0.075 0.925 9 C -0.111 4.111 10 C -0.090 4.090 11 H 0.109 0.891 12 C -0.122 4.122 13 C 0.117 3.883 14 H 0.053 0.947 15 C -0.133 4.133 16 N -0.606 5.606 17 C -0.242 4.242 18 H 0.077 0.923 19 C -0.024 4.024 20 N -0.945 5.945 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.317 1.317 24 H -0.265 1.265 25 C 0.101 3.899 26 N -0.224 5.224 27 N -0.100 5.100 28 N -0.348 5.348 29 C 0.131 3.869 30 C -0.159 4.159 31 C -0.160 4.160 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.431 0.569 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.260 0.740 43 H 0.060 0.940 44 H -0.003 1.003 45 H 0.148 0.852 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.117 0.883 49 H 0.058 0.942 50 H 0.117 0.883 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.889 -6.660 -2.746 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.015 4.015 3 C -0.279 4.279 4 C 0.369 3.631 5 O -0.449 6.449 6 N -0.361 5.361 7 C 0.050 3.950 8 H 0.093 0.907 9 C -0.149 4.149 10 C -0.109 4.109 11 H 0.127 0.873 12 C -0.160 4.160 13 C 0.012 3.988 14 H 0.070 0.930 15 C -0.172 4.172 16 N -0.334 5.334 17 C -0.370 4.370 18 H 0.095 0.905 19 C -0.220 4.220 20 N -0.591 5.591 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.246 1.246 24 H -0.190 1.190 25 C -0.023 4.023 26 N -0.096 5.096 27 N -0.079 5.079 28 N -0.135 5.135 29 C 0.032 3.968 30 C -0.216 4.216 31 C -0.217 4.217 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.285 0.715 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.015 0.985 45 H 0.165 0.835 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.136 0.864 49 H 0.077 0.923 50 H 0.136 0.864 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.918 -7.008 -2.632 20.345 hybrid contribution 1.203 0.520 -0.084 1.314 sum -17.714 -6.488 -2.716 19.059 Atomic orbital electron populations 1.20807 0.81763 1.06176 1.05676 1.22428 0.97557 0.85590 0.95878 1.21656 0.89352 0.96582 1.20261 1.16977 0.85726 0.83337 0.77022 1.90617 1.15964 1.84179 1.54174 1.47808 1.13452 1.05711 1.69101 1.20902 0.95574 0.80143 0.98413 0.90661 1.22026 0.96849 1.03288 0.92739 1.22561 0.95132 0.93568 0.99650 0.87288 1.23068 0.97761 0.98695 0.96443 1.22184 0.96094 0.85158 0.95378 0.93003 1.22384 0.95808 1.00481 0.98570 1.45252 1.31249 1.06759 1.50106 1.18762 0.91523 0.92420 1.34316 0.90530 1.25799 0.96352 1.00960 0.98840 1.69996 1.13400 1.42308 1.33376 0.85981 0.75239 0.81545 0.80362 1.19628 1.24600 1.19009 1.22449 0.90509 0.98487 0.90859 1.74886 1.20297 1.04632 1.09779 1.81913 0.98320 1.03223 1.24473 1.51064 1.05203 1.08551 1.48700 1.22192 1.02503 0.73232 0.98836 1.22156 1.01643 1.02636 0.95190 1.22168 1.01728 1.02636 0.95198 0.87651 0.87189 0.88461 0.71548 0.91460 0.87901 0.87148 0.92538 0.87275 0.93942 0.93137 0.92285 0.98474 0.83484 0.92322 0.93298 0.86447 0.92323 0.86437 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.40 71.24 0.67 -0.94 16 2 C 0.13 3.69 7.02 41.72 0.29 3.98 16 3 C -0.14 -5.46 6.94 40.82 0.28 -5.17 16 4 C 0.58 23.34 6.10 86.69 0.53 23.86 16 5 O -0.57 -21.43 13.45 -4.01 -0.05 -21.49 16 6 N -0.70 -28.92 2.76 -445.67 -1.23 -30.15 16 7 C 0.15 5.29 2.72 45.00 0.12 5.41 16 8 H 0.08 2.46 8.03 -2.39 -0.02 2.44 16 9 C -0.11 -3.17 5.15 30.93 0.16 -3.01 16 10 C -0.09 -2.83 4.33 -9.05 -0.04 -2.87 16 11 H 0.11 2.87 8.14 -2.39 -0.02 2.86 16 12 C -0.12 -3.83 6.18 32.17 0.20 -3.63 16 13 C 0.12 4.74 3.10 45.79 0.14 4.88 16 14 H 0.05 2.32 3.00 -2.39 -0.01 2.32 16 15 C -0.13 -4.68 5.42 30.89 0.17 -4.51 16 16 N -0.61 -28.87 1.43 -664.44 -0.95 -29.82 16 17 C -0.24 -13.97 8.78 84.03 0.74 -13.24 16 18 H 0.08 4.92 7.31 -2.91 -0.02 4.90 16 19 C -0.02 -1.41 5.43 84.86 0.46 -0.95 16 20 N -0.95 -60.83 13.97 21.65 0.30 -60.53 16 21 Si 0.94 47.41 24.91 68.60 1.71 49.12 16 22 H -0.27 -12.70 6.55 99.48 0.65 -12.05 16 23 H -0.32 -16.48 7.11 99.48 0.71 -15.77 16 24 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 25 C 0.10 4.26 5.76 86.85 0.50 4.76 16 26 N -0.22 -10.27 11.42 -50.00 -0.57 -10.84 16 27 N -0.10 -4.02 13.67 37.02 0.51 -3.51 16 28 N -0.35 -9.85 3.28 -313.40 -1.03 -10.88 16 29 C 0.13 2.14 3.68 44.99 0.17 2.31 16 30 C -0.16 -2.40 9.47 71.98 0.68 -1.72 16 31 C -0.16 -2.42 9.47 71.98 0.68 -1.74 16 32 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.11 1.14 7.20 -2.39 -0.02 1.13 16 34 H 0.10 2.20 6.43 -2.38 -0.02 2.19 16 35 H 0.43 20.70 3.53 -92.71 -0.33 20.38 16 36 H 0.07 2.05 6.81 -2.39 -0.02 2.04 16 37 H 0.10 2.22 7.97 -2.39 -0.02 2.20 16 38 H 0.11 2.59 7.75 -2.39 -0.02 2.57 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 2.89 8.00 -2.39 -0.02 2.87 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.06 2.61 3.95 -15.16 -0.06 2.55 16 44 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.15 1.21 6.79 -2.39 -0.02 1.19 16 46 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -80.25 379.23 4.96 -75.29 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.52 Total: 35.37 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.75 Total: 7.44 kcal Atomic # 7 Polarization: -142.76 SS G_CDS: -2.97 Total: -145.73 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.71 Total: 49.12 kcal Total: -80.25 4.96 -75.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047172625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.890 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds