Wall clock time and date at job start Wed Apr 1 2020 05:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36604 * 126.57559 * 2 1 4 4 C 1.47512 * 125.77360 * 359.95731 * 3 2 1 5 5 O 1.21602 * 119.99946 * 5.48060 * 4 3 2 6 6 N 1.34776 * 120.00364 * 185.47636 * 4 3 2 7 7 C 1.47852 * 122.22623 * 354.50294 * 6 4 3 8 8 C 1.52719 * 111.06365 * 127.49411 * 7 6 4 9 9 C 1.53866 * 111.51954 * 48.53354 * 8 7 6 10 10 C 1.51086 * 107.40044 * 303.03501 * 9 8 7 11 11 H 1.09004 * 108.73286 * 308.57887 * 10 9 8 12 12 C 1.45726 * 122.23032 * 174.48228 * 6 4 3 13 13 H 1.09008 * 111.06860 * 119.49474 * 12 6 4 14 14 C 1.53435 * 116.37039 * 350.99023 * 12 6 4 15 15 C 1.55474 * 101.66982 * 207.28328 * 14 12 6 16 16 N 1.45426 * 120.14630 * 184.08368 * 10 9 8 17 17 C 1.36934 * 126.02333 * 29.02620 * 16 10 9 18 18 H 1.08003 * 120.00259 * 0.88021 * 17 16 10 19 19 C 1.38813 * 120.00168 * 180.87648 * 17 16 10 20 20 N 1.31615 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00141 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47279 * 89.99611 * 21 19 17 23 23 H 1.48502 * 109.46867 * 209.99922 * 21 19 17 24 24 H 1.48504 * 109.46856 * 329.99809 * 21 19 17 25 25 N 1.34399 * 108.45104 * 180.22442 * 3 2 1 26 26 N 1.28756 * 109.52942 * 359.58446 * 25 3 2 27 27 N 1.34807 * 126.58467 * 179.97438 * 2 1 3 28 28 C 1.46511 * 126.59239 * 0.05536 * 27 2 1 29 29 C 1.52996 * 109.47092 * 119.99777 * 28 27 2 30 30 C 1.53000 * 109.46822 * 240.00177 * 28 27 2 31 31 H 1.08993 * 109.47401 * 90.02520 * 1 2 3 32 32 H 1.09003 * 109.46424 * 210.02689 * 1 2 3 33 33 H 1.09000 * 109.47210 * 330.01839 * 1 2 3 34 34 H 1.09001 * 109.15741 * 7.09051 * 7 6 4 35 35 H 1.08993 * 109.16304 * 247.90816 * 7 6 4 36 36 H 1.08996 * 109.06867 * 288.00481 * 8 7 6 37 37 H 1.09002 * 109.01451 * 169.01954 * 8 7 6 38 38 H 1.08994 * 109.89106 * 62.53238 * 9 8 7 39 39 H 1.09001 * 109.88098 * 183.54684 * 9 8 7 40 40 H 1.09000 * 110.98707 * 325.37940 * 14 12 6 41 41 H 1.08999 * 110.98425 * 89.18958 * 14 12 6 42 42 H 1.09003 * 109.95518 * 141.97896 * 15 14 12 43 43 H 1.09000 * 109.96064 * 263.18082 * 15 14 12 44 44 H 0.96998 * 119.99784 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.46983 * 359.97438 * 28 27 2 46 46 H 1.08995 * 109.47126 * 179.97438 * 29 28 27 47 47 H 1.08998 * 109.47411 * 299.99968 * 29 28 27 48 48 H 1.09008 * 109.47353 * 60.00068 * 29 28 27 49 49 H 1.08997 * 109.47568 * 59.99868 * 30 28 27 50 50 H 1.09001 * 109.46803 * 180.02562 * 30 28 27 51 51 H 1.09008 * 109.46884 * 299.99480 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6904 2.7643 0.0989 6 7 2.7766 3.4972 -0.1122 7 6 4.2331 3.2429 -0.1165 8 6 4.9002 3.8931 -1.3267 9 6 4.4636 5.3592 -1.4919 10 6 2.9568 5.3724 -1.6019 11 1 2.6558 4.6613 -2.3712 12 6 2.3823 4.8945 -0.2367 13 1 2.7752 5.4876 0.5892 14 6 0.8869 5.1643 -0.4498 15 6 0.9176 6.5143 -1.2203 16 7 2.2540 6.6198 -1.8565 17 6 2.7476 7.6966 -2.5435 18 1 3.7411 7.6587 -2.9653 19 6 1.9711 8.8368 -2.6978 20 7 0.7606 8.8831 -2.1833 21 14 2.6443 10.3055 -3.6355 22 1 2.2974 10.1759 -5.0735 23 1 2.0498 11.5536 -3.0933 24 1 4.1209 10.3543 -3.4849 25 7 3.5983 0.6789 -0.0050 26 7 3.6299 -0.6082 0.0007 27 7 2.3105 -1.0825 0.0005 28 6 1.8865 -2.4849 0.0000 29 6 2.4302 -3.1816 -1.2489 30 6 2.4283 -3.1819 1.2496 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3632 -0.8898 0.5143 33 1 -0.3634 0.8901 0.5135 34 1 4.4084 2.1675 -0.1462 35 1 4.6701 3.6506 0.7949 36 1 4.6288 3.3373 -2.2242 37 1 5.9820 3.8559 -1.1985 38 1 4.7770 5.9395 -0.6241 39 1 4.9049 5.7777 -2.3965 40 1 0.4310 4.3801 -1.0542 41 1 0.3697 5.2707 0.5037 42 1 0.1400 6.5245 -1.9841 43 1 0.7686 7.3420 -0.5269 44 1 0.2178 9.6797 -2.2914 45 1 0.7977 -2.5352 -0.0004 46 1 2.1151 -4.2250 -1.2491 47 1 2.0442 -2.6850 -2.1391 48 1 3.5191 -3.1313 -1.2482 49 1 2.0409 -2.6855 2.1393 50 1 2.1132 -4.2254 1.2490 51 1 3.5172 -3.1315 1.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049814791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:47 Heat of formation + Delta-G solvation = 104.072642 kcal Electronic energy + Delta-G solvation = -32198.266281 eV Core-core repulsion = 28136.225180 eV Total energy + Delta-G solvation = -4062.041100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.45735 -39.98470 -37.61242 -36.76063 -35.25589 -33.25740 -32.44487 -32.19617 -31.05442 -28.96484 -28.11097 -27.89262 -27.79332 -24.84029 -24.41065 -24.16748 -22.51323 -21.35729 -20.77558 -20.40424 -19.55083 -18.86622 -17.33859 -16.54326 -16.34772 -16.13549 -15.47284 -15.05173 -14.91405 -14.61914 -14.46826 -14.17244 -13.91568 -13.76238 -13.62930 -13.42083 -13.29545 -13.17717 -12.84732 -12.76515 -12.72531 -12.35672 -12.11831 -12.08853 -12.05262 -11.88138 -11.65653 -11.48772 -11.26602 -10.85851 -10.78729 -10.49212 -10.38621 -10.35498 -10.12237 -9.98595 -9.76587 -9.73965 -9.54371 -9.18701 -9.05239 -8.52587 -8.07055 -6.74563 -5.63009 -2.96473 1.01388 1.70935 1.78400 3.23350 3.45180 3.47471 3.50008 3.51800 3.87621 4.02911 4.24416 4.35549 4.40096 4.56279 4.59374 4.82166 4.95786 4.96550 5.09544 5.13562 5.17447 5.27672 5.33068 5.40892 5.46155 5.50521 5.56516 5.59613 5.64885 5.66575 5.74829 5.78519 5.89875 5.96945 6.17393 6.22628 6.28682 6.31188 6.43884 6.52061 6.58054 6.67443 6.84120 6.90401 6.98648 7.28418 7.65152 7.71870 7.77308 7.89577 7.92978 8.32549 8.47369 9.27356 9.90785 10.58815 11.49084 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002648 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.239233 B =10573.224282 C =11182.438907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.120 3.880 3 C -0.094 4.094 4 C 0.603 3.397 5 O -0.533 6.533 6 N -0.581 5.581 7 C 0.076 3.924 8 C -0.124 4.124 9 C -0.116 4.116 10 C 0.159 3.841 11 H 0.017 0.983 12 C 0.117 3.883 13 H 0.080 0.920 14 C -0.128 4.128 15 C 0.174 3.826 16 N -0.594 5.594 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 N -0.206 5.206 26 N -0.070 5.070 27 N -0.357 5.357 28 C 0.144 3.856 29 C -0.163 4.163 30 C -0.163 4.163 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -26.315 6.613 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.017 4.017 3 C -0.233 4.233 4 C 0.388 3.612 5 O -0.410 6.410 6 N -0.312 5.312 7 C -0.047 4.047 8 C -0.163 4.163 9 C -0.154 4.154 10 C 0.050 3.950 11 H 0.035 0.965 12 C 0.013 3.987 13 H 0.097 0.903 14 C -0.166 4.166 15 C 0.050 3.950 16 N -0.318 5.318 17 C -0.352 4.352 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 N -0.078 5.078 26 N -0.049 5.049 27 N -0.144 5.144 28 C 0.042 3.958 29 C -0.220 4.220 30 C -0.221 4.221 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.884 -26.405 6.597 27.369 hybrid contribution -0.481 1.023 -0.532 1.250 sum 2.403 -25.382 6.064 26.207 Atomic orbital electron populations 1.20751 0.84763 1.05428 1.04686 1.21907 0.96241 0.86225 0.97302 1.21397 0.88729 0.95710 1.17481 1.16704 0.85286 0.82029 0.77144 1.90755 1.16001 1.82802 1.51400 1.47781 1.06734 1.06425 1.70229 1.22618 0.78698 1.05327 0.98058 1.21848 0.99716 0.96540 0.98224 1.21433 0.97076 0.94854 1.02078 1.20848 0.91495 0.89775 0.92931 0.96512 1.22471 0.98273 0.78957 0.99008 0.90259 1.22925 0.93008 0.99707 1.01000 1.21723 0.86732 0.91710 0.94851 1.44234 1.12311 1.12637 1.62662 1.19016 0.99024 0.91123 1.26015 0.90405 1.24795 0.96516 0.98122 1.01074 1.69945 1.09181 1.28365 1.49372 0.86158 0.77966 0.82480 0.79405 1.21723 1.21754 1.20750 1.74172 1.18864 1.03577 1.11142 1.81902 0.96537 1.03728 1.22695 1.50578 1.06275 1.07142 1.50419 1.21635 1.00495 0.75374 0.98256 1.22155 1.03217 1.00821 0.95855 1.22161 1.03233 1.00829 0.95833 0.89089 0.90964 0.86533 0.85073 0.92173 0.92175 0.91089 0.91893 0.91680 0.90313 0.91883 0.94261 0.92630 0.93809 0.87296 0.89958 0.91647 0.90682 0.91709 0.89965 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.47 36.01 0.34 -0.51 16 2 C 0.12 1.39 7.02 -81.87 -0.57 0.82 16 3 C -0.09 -1.37 6.80 -83.55 -0.57 -1.94 16 4 C 0.60 10.35 7.63 -12.48 -0.10 10.25 16 5 O -0.53 -9.86 11.65 5.28 0.06 -9.80 16 6 N -0.58 -10.18 2.91 -165.13 -0.48 -10.66 16 7 C 0.08 1.15 6.30 -3.44 -0.02 1.13 16 8 C -0.12 -1.87 5.93 -26.42 -0.16 -2.03 16 9 C -0.12 -2.14 5.50 -27.24 -0.15 -2.29 16 10 C 0.16 3.47 2.61 -68.07 -0.18 3.30 16 11 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 12 C 0.12 2.35 3.28 -66.72 -0.22 2.13 16 13 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 14 C -0.13 -2.75 4.98 -25.19 -0.13 -2.88 16 15 C 0.17 4.47 5.48 -1.69 -0.01 4.46 16 16 N -0.59 -15.61 3.36 -162.90 -0.55 -16.16 16 17 C -0.22 -6.30 9.95 -15.06 -0.15 -6.45 16 18 H 0.08 2.11 7.36 -52.48 -0.39 1.73 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.65 10.46 55.49 0.58 -27.07 16 21 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 N -0.21 -2.95 8.74 32.84 0.29 -2.66 16 26 N -0.07 -0.89 13.67 60.35 0.82 -0.07 16 27 N -0.36 -3.57 3.28 -50.40 -0.17 -3.74 16 28 C 0.14 0.83 3.68 -67.93 -0.25 0.58 16 29 C -0.16 -0.82 9.47 37.16 0.35 -0.47 16 30 C -0.16 -0.78 9.47 37.16 0.35 -0.43 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.40 7.19 -51.93 -0.37 0.02 16 33 H 0.12 1.26 6.33 -51.93 -0.33 0.93 16 34 H 0.13 1.92 3.84 -98.54 -0.38 1.54 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 39 H 0.06 1.24 7.74 -51.93 -0.40 0.84 16 40 H 0.08 1.74 6.32 -51.93 -0.33 1.41 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 43 H 0.06 1.55 7.19 -51.93 -0.37 1.17 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.11 0.40 6.79 -51.93 -0.35 0.04 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -33.56 390.75 -8.50 -42.06 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.38 Total: -0.58 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.55 Total: 5.31 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.50 Total: -60.36 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.56 -8.50 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049814791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.134 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds