Wall clock time and date at job start Wed Apr 1 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36604 * 126.57559 * 2 1 4 4 C 1.47512 * 125.77360 * 359.95731 * 3 2 1 5 5 O 1.21602 * 119.99946 * 5.48060 * 4 3 2 6 6 N 1.34776 * 120.00364 * 185.47636 * 4 3 2 7 7 C 1.47852 * 122.22623 * 354.50294 * 6 4 3 8 8 C 1.52719 * 111.06365 * 127.49411 * 7 6 4 9 9 C 1.53866 * 111.51954 * 48.53354 * 8 7 6 10 10 C 1.51086 * 107.40044 * 303.03501 * 9 8 7 11 11 H 1.09004 * 108.73286 * 308.57887 * 10 9 8 12 12 C 1.45726 * 122.23032 * 174.48228 * 6 4 3 13 13 H 1.09008 * 111.06860 * 119.49474 * 12 6 4 14 14 C 1.53435 * 116.37039 * 350.99023 * 12 6 4 15 15 C 1.55474 * 101.66982 * 207.28328 * 14 12 6 16 16 N 1.45426 * 120.14630 * 184.08368 * 10 9 8 17 17 C 1.36934 * 126.02333 * 29.02620 * 16 10 9 18 18 H 1.08003 * 120.00259 * 0.88021 * 17 16 10 19 19 C 1.38813 * 120.00168 * 180.87648 * 17 16 10 20 20 N 1.31615 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00141 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47279 * 89.99611 * 21 19 17 23 23 H 1.48502 * 109.46867 * 209.99922 * 21 19 17 24 24 H 1.48504 * 109.46856 * 329.99809 * 21 19 17 25 25 N 1.34399 * 108.45104 * 180.22442 * 3 2 1 26 26 N 1.28756 * 109.52942 * 359.58446 * 25 3 2 27 27 N 1.34807 * 126.58467 * 179.97438 * 2 1 3 28 28 C 1.46511 * 126.59239 * 0.05536 * 27 2 1 29 29 C 1.52996 * 109.47092 * 119.99777 * 28 27 2 30 30 C 1.53000 * 109.46822 * 240.00177 * 28 27 2 31 31 H 1.08993 * 109.47401 * 90.02520 * 1 2 3 32 32 H 1.09003 * 109.46424 * 210.02689 * 1 2 3 33 33 H 1.09000 * 109.47210 * 330.01839 * 1 2 3 34 34 H 1.09001 * 109.15741 * 7.09051 * 7 6 4 35 35 H 1.08993 * 109.16304 * 247.90816 * 7 6 4 36 36 H 1.08996 * 109.06867 * 288.00481 * 8 7 6 37 37 H 1.09002 * 109.01451 * 169.01954 * 8 7 6 38 38 H 1.08994 * 109.89106 * 62.53238 * 9 8 7 39 39 H 1.09001 * 109.88098 * 183.54684 * 9 8 7 40 40 H 1.09000 * 110.98707 * 325.37940 * 14 12 6 41 41 H 1.08999 * 110.98425 * 89.18958 * 14 12 6 42 42 H 1.09003 * 109.95518 * 141.97896 * 15 14 12 43 43 H 1.09000 * 109.96064 * 263.18082 * 15 14 12 44 44 H 0.96998 * 119.99784 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.46983 * 359.97438 * 28 27 2 46 46 H 1.08995 * 109.47126 * 179.97438 * 29 28 27 47 47 H 1.08998 * 109.47411 * 299.99968 * 29 28 27 48 48 H 1.09008 * 109.47353 * 60.00068 * 29 28 27 49 49 H 1.08997 * 109.47568 * 59.99868 * 30 28 27 50 50 H 1.09001 * 109.46803 * 180.02562 * 30 28 27 51 51 H 1.09008 * 109.46884 * 299.99480 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6904 2.7643 0.0989 6 7 2.7766 3.4972 -0.1122 7 6 4.2331 3.2429 -0.1165 8 6 4.9002 3.8931 -1.3267 9 6 4.4636 5.3592 -1.4919 10 6 2.9568 5.3724 -1.6019 11 1 2.6558 4.6613 -2.3712 12 6 2.3823 4.8945 -0.2367 13 1 2.7752 5.4876 0.5892 14 6 0.8869 5.1643 -0.4498 15 6 0.9176 6.5143 -1.2203 16 7 2.2540 6.6198 -1.8565 17 6 2.7476 7.6966 -2.5435 18 1 3.7411 7.6587 -2.9653 19 6 1.9711 8.8368 -2.6978 20 7 0.7606 8.8831 -2.1833 21 14 2.6443 10.3055 -3.6355 22 1 2.2974 10.1759 -5.0735 23 1 2.0498 11.5536 -3.0933 24 1 4.1209 10.3543 -3.4849 25 7 3.5983 0.6789 -0.0050 26 7 3.6299 -0.6082 0.0007 27 7 2.3105 -1.0825 0.0005 28 6 1.8865 -2.4849 0.0000 29 6 2.4302 -3.1816 -1.2489 30 6 2.4283 -3.1819 1.2496 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3632 -0.8898 0.5143 33 1 -0.3634 0.8901 0.5135 34 1 4.4084 2.1675 -0.1462 35 1 4.6701 3.6506 0.7949 36 1 4.6288 3.3373 -2.2242 37 1 5.9820 3.8559 -1.1985 38 1 4.7770 5.9395 -0.6241 39 1 4.9049 5.7777 -2.3965 40 1 0.4310 4.3801 -1.0542 41 1 0.3697 5.2707 0.5037 42 1 0.1400 6.5245 -1.9841 43 1 0.7686 7.3420 -0.5269 44 1 0.2178 9.6797 -2.2914 45 1 0.7977 -2.5352 -0.0004 46 1 2.1151 -4.2250 -1.2491 47 1 2.0442 -2.6850 -2.1391 48 1 3.5191 -3.1313 -1.2482 49 1 2.0409 -2.6855 2.1393 50 1 2.1132 -4.2254 1.2490 51 1 3.5172 -3.1315 1.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049814791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:46 Heat of formation + Delta-G solvation = 83.037210 kcal Electronic energy + Delta-G solvation = -32199.178446 eV Core-core repulsion = 28136.225180 eV Total energy + Delta-G solvation = -4062.953265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.40206 -41.46326 -39.13737 -37.46133 -36.83672 -34.29876 -34.10376 -33.74142 -32.08799 -30.74196 -29.67551 -28.82357 -28.25567 -26.45805 -26.16213 -24.99114 -23.76838 -22.84396 -22.27464 -21.42747 -21.18833 -20.11678 -18.65675 -17.99109 -17.36862 -17.25143 -17.01119 -16.65341 -16.23873 -15.85103 -15.72929 -15.51124 -15.17063 -15.00925 -14.95817 -14.41904 -14.25211 -14.11370 -13.97981 -13.94576 -13.86411 -13.42116 -13.24588 -13.18228 -13.16626 -13.05518 -12.80072 -12.72260 -12.55014 -12.51534 -12.21865 -12.05047 -12.00134 -11.81826 -11.73416 -11.64399 -11.46716 -11.15163 -11.10588 -10.74464 -10.48536 -10.18932 -9.51727 -8.89268 -7.82395 -5.18964 0.12651 0.59910 1.04376 1.46301 1.48716 1.57287 1.91619 2.22909 2.51686 3.07756 3.25474 3.35784 3.40306 3.53629 3.68558 3.83087 3.89163 3.96888 4.00769 4.09081 4.11320 4.13538 4.27160 4.33295 4.43695 4.59055 4.59964 4.61082 4.63964 4.65626 4.68656 4.72534 4.77498 4.84230 4.92132 5.04489 5.06804 5.10338 5.15979 5.20253 5.20983 5.25341 5.36570 5.45302 5.49878 5.57219 5.61385 5.68550 5.76479 6.19654 6.44790 6.86793 7.07926 7.16033 7.77034 8.46078 9.29253 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.002648 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.239233 B =10573.224282 C =11182.438907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.132 3.868 3 C -0.124 4.124 4 C 0.599 3.401 5 O -0.553 6.553 6 N -0.587 5.587 7 C 0.075 3.925 8 C -0.114 4.114 9 C -0.110 4.110 10 C 0.154 3.846 11 H -0.003 1.003 12 C 0.132 3.868 13 H 0.079 0.921 14 C -0.109 4.109 15 C 0.185 3.815 16 N -0.612 5.612 17 C -0.233 4.233 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.979 3.021 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.266 1.266 25 N -0.220 5.220 26 N -0.080 5.080 27 N -0.342 5.342 28 C 0.131 3.869 29 C -0.160 4.160 30 C -0.159 4.159 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.003 0.997 43 H 0.027 0.973 44 H 0.247 0.753 45 H 0.140 0.860 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.112 0.888 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -29.236 6.997 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.007 4.007 3 C -0.263 4.263 4 C 0.386 3.614 5 O -0.432 6.432 6 N -0.317 5.317 7 C -0.047 4.047 8 C -0.152 4.152 9 C -0.148 4.148 10 C 0.046 3.954 11 H 0.015 0.985 12 C 0.027 3.973 13 H 0.097 0.903 14 C -0.147 4.147 15 C 0.060 3.940 16 N -0.337 5.337 17 C -0.362 4.362 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.807 3.193 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.191 1.191 25 N -0.092 5.092 26 N -0.059 5.059 27 N -0.130 5.130 28 C 0.032 3.968 29 C -0.217 4.217 30 C -0.217 4.217 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.158 0.842 46 H 0.131 0.869 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.018 -29.396 6.985 30.481 hybrid contribution -0.870 1.746 -0.661 2.060 sum 3.147 -27.650 6.323 28.538 Atomic orbital electron populations 1.20842 0.82717 1.06348 1.05520 1.22244 0.97329 0.85765 0.95364 1.21132 0.89756 0.94949 1.20470 1.17051 0.84955 0.83037 0.76308 1.90733 1.16802 1.83433 1.52234 1.47826 1.08013 1.05196 1.70713 1.22806 0.77123 1.06153 0.98585 1.21805 1.01722 0.93632 0.98076 1.21397 0.94149 0.97477 1.01801 1.20981 0.93828 0.87298 0.93258 0.98506 1.22089 0.96521 0.80944 0.97767 0.90313 1.22673 0.94618 0.96938 1.00484 1.21442 0.86048 0.93023 0.93513 1.44482 1.13047 1.13576 1.62631 1.19414 0.99294 0.91699 1.25804 0.89599 1.25679 0.96905 1.01059 1.02511 1.70168 1.10459 1.28756 1.50905 0.85073 0.78029 0.78516 0.77698 1.21545 1.22128 1.19051 1.74050 1.18954 1.04371 1.11828 1.81809 0.98162 1.03072 1.22807 1.50918 1.05071 1.08408 1.48583 1.22212 1.02408 0.73039 0.99129 1.22164 1.02143 1.02454 0.94961 1.22167 1.02164 1.02434 0.94897 0.88120 0.86967 0.88660 0.84054 0.90816 0.92710 0.87656 0.91685 0.92387 0.90862 0.91029 0.97846 0.95475 0.94425 0.84219 0.86902 0.92538 0.92253 0.92258 0.86937 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.47 71.24 0.67 -0.78 16 2 C 0.13 2.81 7.02 41.72 0.29 3.10 16 3 C -0.12 -3.52 6.80 40.81 0.28 -3.24 16 4 C 0.60 20.53 7.63 86.69 0.66 21.19 16 5 O -0.55 -20.70 11.65 -4.04 -0.05 -20.75 16 6 N -0.59 -20.42 2.91 -794.59 -2.32 -22.73 16 7 C 0.08 2.17 6.30 86.03 0.54 2.71 16 8 C -0.11 -3.23 5.93 30.79 0.18 -3.05 16 9 C -0.11 -4.00 5.50 30.26 0.17 -3.83 16 10 C 0.15 6.89 2.61 45.48 0.12 7.01 16 11 H 0.00 -0.12 8.06 -2.39 -0.02 -0.14 16 12 C 0.13 5.36 3.28 46.19 0.15 5.51 16 13 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 14 C -0.11 -4.85 4.98 31.59 0.16 -4.69 16 15 C 0.18 10.01 5.48 86.87 0.48 10.48 16 16 N -0.61 -33.36 3.36 -669.29 -2.25 -35.61 16 17 C -0.23 -13.45 9.95 84.03 0.84 -12.61 16 18 H 0.09 4.69 7.36 -2.91 -0.02 4.67 16 19 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 20 N -0.95 -59.58 10.46 21.65 0.23 -59.35 16 21 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 N -0.22 -6.07 8.74 -50.00 -0.44 -6.51 16 26 N -0.08 -1.92 13.67 37.02 0.51 -1.41 16 27 N -0.34 -6.10 3.28 -313.37 -1.03 -7.13 16 28 C 0.13 1.08 3.68 44.99 0.17 1.24 16 29 C -0.16 -1.14 9.47 71.98 0.68 -0.46 16 30 C -0.16 -1.02 9.47 71.98 0.68 -0.34 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 0.77 7.19 -2.39 -0.02 0.75 16 33 H 0.09 1.96 6.33 -2.39 -0.02 1.95 16 34 H 0.14 3.93 3.84 -62.69 -0.24 3.69 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 39 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 40 H 0.07 3.36 6.32 -2.39 -0.02 3.34 16 41 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.00 0.20 7.81 -2.39 -0.02 0.18 16 43 H 0.03 1.60 7.19 -2.39 -0.02 1.58 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.14 0.34 6.79 -2.39 -0.02 0.33 16 46 H 0.11 0.13 8.14 -2.39 -0.02 0.12 16 47 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 51 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -76.74 390.75 3.91 -72.83 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.70 Total: 12.92 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.53 Total: 18.66 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -5.30 Total: -132.75 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.74 3.91 -72.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049814791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.869 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds