Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36595 * 126.58296 * 2 1 4 4 C 1.47523 * 125.76865 * 0.02562 * 3 2 1 5 5 O 1.21592 * 120.00253 * 353.34168 * 4 3 2 6 6 N 1.34781 * 120.00237 * 173.34342 * 4 3 2 7 7 C 1.46808 * 119.61153 * 352.32616 * 6 4 3 8 8 C 1.53444 * 107.65991 * 232.22310 * 7 6 4 9 9 C 1.51426 * 108.73149 * 302.42308 * 8 7 6 10 10 C 1.52946 * 111.49797 * 62.99670 * 9 8 7 11 11 H 1.08995 * 112.28010 * 71.25841 * 10 9 8 12 12 C 1.55525 * 107.62231 * 195.70629 * 10 9 8 13 13 N 1.47528 * 104.68595 * 78.06744 * 12 10 9 14 14 C 1.36932 * 125.70422 * 204.52378 * 13 12 10 15 15 H 1.08002 * 120.00275 * 6.57116 * 14 13 12 16 16 C 1.38809 * 120.00109 * 186.56684 * 14 13 12 17 17 N 1.31624 * 120.00324 * 352.41215 * 16 14 13 18 18 Si 1.86802 * 120.00084 * 172.40358 * 16 14 13 19 19 H 1.48495 * 109.47117 * 94.98217 * 18 16 14 20 20 H 1.48502 * 109.46951 * 214.98159 * 18 16 14 21 21 H 1.48494 * 109.47280 * 334.97805 * 18 16 14 22 22 C 1.47284 * 108.59171 * 24.55005 * 13 12 10 23 23 C 1.45168 * 119.61850 * 172.34715 * 6 4 3 24 24 H 1.08996 * 109.70749 * 12.18270 * 23 6 4 25 25 N 1.34400 * 108.45973 * 180.26569 * 3 2 1 26 26 N 1.28764 * 109.52244 * 359.58815 * 25 3 2 27 27 N 1.34811 * 126.57828 * 180.02562 * 2 1 3 28 28 C 1.46499 * 126.59627 * 359.94162 * 27 2 1 29 29 C 1.53000 * 109.47149 * 119.99828 * 28 27 2 30 30 C 1.53007 * 109.47334 * 240.00118 * 28 27 2 31 31 H 1.08992 * 109.47432 * 89.97067 * 1 2 3 32 32 H 1.08998 * 109.46991 * 209.97850 * 1 2 3 33 33 H 1.09004 * 109.46673 * 329.97558 * 1 2 3 34 34 H 1.09001 * 109.82450 * 351.76668 * 7 6 4 35 35 H 1.09005 * 109.82091 * 112.61899 * 7 6 4 36 36 H 1.09000 * 109.63607 * 61.76461 * 8 7 6 37 37 H 1.09002 * 109.63762 * 182.16413 * 8 7 6 38 38 H 1.08995 * 108.81954 * 302.46593 * 9 8 7 39 39 H 1.08994 * 108.87889 * 183.56297 * 9 8 7 40 40 H 1.09007 * 110.39447 * 196.87258 * 12 10 9 41 41 H 1.09001 * 110.39713 * 319.26917 * 12 10 9 42 42 H 0.96994 * 120.00354 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.98807 * 239.58991 * 22 13 12 44 44 H 1.09005 * 109.98896 * 118.28088 * 22 13 12 45 45 H 1.09002 * 109.47286 * 359.97438 * 28 27 2 46 46 H 1.09003 * 109.46911 * 179.97438 * 29 28 27 47 47 H 1.08996 * 109.47125 * 299.99777 * 29 28 27 48 48 H 1.08998 * 109.47045 * 60.00735 * 29 28 27 49 49 H 1.08996 * 109.46958 * 59.99622 * 30 28 27 50 50 H 1.08997 * 109.46865 * 179.97438 * 30 28 27 51 51 H 1.09002 * 109.46625 * 300.00027 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5026 0.0005 5 8 0.6928 2.7650 -0.1211 6 7 2.7743 3.4963 0.1358 7 6 4.1710 3.1717 0.4506 8 6 4.5783 4.0044 1.6734 9 6 4.3763 5.4704 1.3525 10 6 2.9044 5.7879 1.0845 11 1 2.3013 5.7484 1.9915 12 6 2.8418 7.1759 0.3855 13 7 3.2134 6.9058 -1.0164 14 6 3.7497 7.8135 -1.8901 15 1 4.0330 8.7959 -1.5420 16 6 3.9293 7.4712 -3.2233 17 7 3.7260 6.2321 -3.6178 18 14 4.4595 8.7692 -4.4576 19 1 5.9355 8.7285 -4.6156 20 1 3.8138 8.4996 -5.7675 21 1 4.0505 10.1113 -3.9712 22 6 2.9104 5.4966 -1.3193 23 6 2.3518 4.8751 -0.0311 24 1 1.2632 4.9270 -0.0432 25 7 3.5984 0.6788 -0.0059 26 7 3.6299 -0.6085 -0.0009 27 7 2.3104 -1.0826 -0.0005 28 6 1.8863 -2.4849 0.0001 29 6 2.4280 -3.1820 -1.2495 30 6 2.4301 -3.1817 1.2490 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 4.2611 2.1099 0.6799 35 1 4.8088 3.4219 -0.3972 36 1 3.9538 3.7342 2.5250 37 1 5.6250 3.8164 1.9125 38 1 4.9640 5.7213 0.4695 39 1 4.7243 6.0672 2.1956 40 1 1.8321 7.5831 0.4393 41 1 3.5542 7.8633 0.8416 42 1 3.8511 5.9930 -4.5494 43 1 3.8197 4.9764 -1.6202 44 1 2.1668 5.4379 -2.1142 45 1 0.7975 -2.5352 0.0014 46 1 2.1129 -4.2255 -1.2488 47 1 2.0406 -2.6857 -2.1392 48 1 3.5168 -3.1318 -1.2504 49 1 2.0442 -2.6850 2.1392 50 1 2.1142 -4.2249 1.2496 51 1 3.5189 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050174347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = 98.301619 kcal Electronic energy + Delta-G solvation = -32295.712494 eV Core-core repulsion = 28233.421143 eV Total energy + Delta-G solvation = -4062.291351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.37462 -39.95668 -37.79996 -36.67721 -35.12462 -33.20177 -32.68718 -31.85628 -31.07513 -29.18426 -28.14236 -27.82532 -27.02673 -25.43249 -24.27854 -23.98099 -22.64441 -21.75325 -20.44164 -20.26820 -19.70085 -18.12960 -17.28587 -16.81814 -16.37770 -16.22023 -15.71910 -14.92935 -14.71263 -14.59385 -14.45303 -14.23188 -13.86926 -13.70615 -13.56972 -13.41396 -13.19744 -13.07888 -12.75686 -12.70593 -12.61288 -12.48587 -12.14808 -12.00932 -11.86635 -11.71671 -11.52828 -11.44446 -11.18904 -10.96948 -10.78292 -10.63050 -10.48787 -10.34706 -10.23424 -9.94832 -9.81475 -9.69172 -9.54081 -9.39866 -9.10491 -8.50083 -7.96389 -6.75269 -5.64968 -2.97759 1.09897 1.80379 1.87571 3.36978 3.44830 3.50316 3.51954 3.52530 3.95230 4.12136 4.31273 4.42340 4.48942 4.56485 4.67887 4.89989 5.02002 5.05222 5.16111 5.20173 5.24702 5.33419 5.38233 5.43723 5.48092 5.52607 5.56454 5.59720 5.63514 5.68251 5.74921 5.81802 5.87560 6.06994 6.15049 6.22829 6.33824 6.37322 6.41795 6.46241 6.52901 6.58661 6.74594 6.86221 7.05810 7.08589 7.58153 7.65846 7.87242 7.90105 8.01154 8.30923 8.53589 9.27033 9.88496 10.55275 11.46532 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002946 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.474108 B = 9502.850152 C =10103.223217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.119 3.881 3 C -0.093 4.093 4 C 0.599 3.401 5 O -0.545 6.545 6 N -0.569 5.569 7 C 0.085 3.915 8 C -0.128 4.128 9 C -0.110 4.110 10 C -0.109 4.109 11 H 0.075 0.925 12 C 0.139 3.861 13 N -0.602 5.602 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.177 3.823 23 C 0.116 3.884 24 H 0.093 0.907 25 N -0.199 5.199 26 N -0.071 5.071 27 N -0.358 5.358 28 C 0.144 3.856 29 C -0.163 4.163 30 C -0.162 4.162 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -20.479 11.614 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.019 4.019 3 C -0.232 4.232 4 C 0.385 3.615 5 O -0.423 6.423 6 N -0.298 5.298 7 C -0.038 4.038 8 C -0.167 4.167 9 C -0.147 4.147 10 C -0.129 4.129 11 H 0.093 0.907 12 C 0.012 3.988 13 N -0.329 5.329 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.739 3.261 19 H -0.218 1.218 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.052 3.948 23 C 0.012 3.988 24 H 0.111 0.889 25 N -0.072 5.072 26 N -0.050 5.050 27 N -0.145 5.145 28 C 0.043 3.957 29 C -0.221 4.221 30 C -0.220 4.220 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.721 -20.756 11.299 23.923 hybrid contribution -0.539 0.798 -0.846 1.282 sum -4.260 -19.959 10.452 22.929 Atomic orbital electron populations 1.20676 0.84870 1.04905 1.04705 1.21869 0.96165 0.86309 0.97508 1.21285 0.88816 0.95535 1.17573 1.16800 0.85353 0.82449 0.76947 1.90725 1.16182 1.83301 1.52095 1.47235 1.09446 1.05834 1.67304 1.22585 0.81314 1.02352 0.97544 1.21628 1.00906 0.96443 0.97691 1.21172 0.96390 0.95043 1.02122 1.22574 0.96274 0.97030 0.97004 0.90655 1.21740 0.97340 0.93347 0.86360 1.44425 1.73783 1.07493 1.07182 1.19021 1.34126 0.93883 0.88536 0.90388 1.24823 1.01892 0.96566 0.97032 1.69984 1.55031 1.15771 1.15613 0.86160 0.77858 0.80889 0.81236 1.21784 1.21725 1.20673 1.21263 0.99093 0.84064 0.90426 1.21920 1.00187 0.78947 0.97752 0.88853 1.74462 1.18786 1.03446 1.10493 1.81923 0.96400 1.03828 1.22801 1.50574 1.06340 1.07059 1.50554 1.21617 1.00412 0.75469 0.98231 1.22157 1.03286 1.00739 0.95896 1.22157 1.03266 1.00769 0.95830 0.88977 0.91051 0.87106 0.86069 0.90917 0.92539 0.91182 0.90223 0.92832 0.96214 0.93887 0.93819 0.93360 0.93433 0.87379 0.90022 0.91617 0.90652 0.91763 0.90026 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.35 36.01 0.34 -0.54 16 2 C 0.12 1.49 7.02 -81.88 -0.57 0.92 16 3 C -0.09 -1.49 6.66 -83.55 -0.56 -2.05 16 4 C 0.60 11.12 7.63 -12.47 -0.10 11.02 16 5 O -0.55 -10.86 14.14 5.28 0.07 -10.78 16 6 N -0.57 -10.80 2.72 -166.63 -0.45 -11.25 16 7 C 0.09 1.46 5.77 -3.64 -0.02 1.44 16 8 C -0.13 -1.95 6.06 -27.30 -0.17 -2.12 16 9 C -0.11 -1.88 4.77 -27.55 -0.13 -2.02 16 10 C -0.11 -2.01 3.69 -88.59 -0.33 -2.34 16 11 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 12 C 0.14 2.94 6.54 -2.14 -0.01 2.92 16 13 N -0.60 -15.61 3.03 -169.86 -0.52 -16.13 16 14 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 15 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 16 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 17 N -0.92 -27.67 10.39 55.49 0.58 -27.09 16 18 Si 0.91 22.56 29.56 -169.99 -5.02 17.53 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.18 4.50 4.60 -3.33 -0.02 4.49 16 23 C 0.12 2.42 2.96 -67.64 -0.20 2.22 16 24 H 0.09 2.04 6.92 -51.93 -0.36 1.68 16 25 N -0.20 -3.20 8.74 32.85 0.29 -2.91 16 26 N -0.07 -1.00 13.67 60.35 0.82 -0.18 16 27 N -0.36 -3.95 3.28 -50.40 -0.17 -4.12 16 28 C 0.14 0.95 3.68 -67.93 -0.25 0.70 16 29 C -0.16 -0.98 9.47 37.16 0.35 -0.62 16 30 C -0.16 -0.88 9.47 37.16 0.35 -0.53 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 33 H 0.11 1.24 6.59 -51.93 -0.34 0.90 16 34 H 0.12 1.98 4.10 -86.62 -0.36 1.63 16 35 H 0.07 1.39 7.54 -51.93 -0.39 0.99 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.63 7.34 -51.93 -0.38 1.25 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 1.35 6.69 -51.93 -0.35 1.00 16 44 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 45 H 0.11 0.46 6.79 -51.93 -0.35 0.11 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -33.85 392.62 -8.36 -42.21 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.32 Total: 0.15 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.56 Total: 6.65 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.55 Total: -61.68 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.85 -8.36 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050174347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.513 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds