Wall clock time and date at job start Wed Apr 1 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36595 * 126.58296 * 2 1 4 4 C 1.47523 * 125.76865 * 0.02562 * 3 2 1 5 5 O 1.21592 * 120.00253 * 353.34168 * 4 3 2 6 6 N 1.34781 * 120.00237 * 173.34342 * 4 3 2 7 7 C 1.46808 * 119.61153 * 352.32616 * 6 4 3 8 8 C 1.53444 * 107.65991 * 232.22310 * 7 6 4 9 9 C 1.51426 * 108.73149 * 302.42308 * 8 7 6 10 10 C 1.52946 * 111.49797 * 62.99670 * 9 8 7 11 11 H 1.08995 * 112.28010 * 71.25841 * 10 9 8 12 12 C 1.55525 * 107.62231 * 195.70629 * 10 9 8 13 13 N 1.47528 * 104.68595 * 78.06744 * 12 10 9 14 14 C 1.36932 * 125.70422 * 204.52378 * 13 12 10 15 15 H 1.08002 * 120.00275 * 6.57116 * 14 13 12 16 16 C 1.38809 * 120.00109 * 186.56684 * 14 13 12 17 17 N 1.31624 * 120.00324 * 352.41215 * 16 14 13 18 18 Si 1.86802 * 120.00084 * 172.40358 * 16 14 13 19 19 H 1.48495 * 109.47117 * 94.98217 * 18 16 14 20 20 H 1.48502 * 109.46951 * 214.98159 * 18 16 14 21 21 H 1.48494 * 109.47280 * 334.97805 * 18 16 14 22 22 C 1.47284 * 108.59171 * 24.55005 * 13 12 10 23 23 C 1.45168 * 119.61850 * 172.34715 * 6 4 3 24 24 H 1.08996 * 109.70749 * 12.18270 * 23 6 4 25 25 N 1.34400 * 108.45973 * 180.26569 * 3 2 1 26 26 N 1.28764 * 109.52244 * 359.58815 * 25 3 2 27 27 N 1.34811 * 126.57828 * 180.02562 * 2 1 3 28 28 C 1.46499 * 126.59627 * 359.94162 * 27 2 1 29 29 C 1.53000 * 109.47149 * 119.99828 * 28 27 2 30 30 C 1.53007 * 109.47334 * 240.00118 * 28 27 2 31 31 H 1.08992 * 109.47432 * 89.97067 * 1 2 3 32 32 H 1.08998 * 109.46991 * 209.97850 * 1 2 3 33 33 H 1.09004 * 109.46673 * 329.97558 * 1 2 3 34 34 H 1.09001 * 109.82450 * 351.76668 * 7 6 4 35 35 H 1.09005 * 109.82091 * 112.61899 * 7 6 4 36 36 H 1.09000 * 109.63607 * 61.76461 * 8 7 6 37 37 H 1.09002 * 109.63762 * 182.16413 * 8 7 6 38 38 H 1.08995 * 108.81954 * 302.46593 * 9 8 7 39 39 H 1.08994 * 108.87889 * 183.56297 * 9 8 7 40 40 H 1.09007 * 110.39447 * 196.87258 * 12 10 9 41 41 H 1.09001 * 110.39713 * 319.26917 * 12 10 9 42 42 H 0.96994 * 120.00354 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.98807 * 239.58991 * 22 13 12 44 44 H 1.09005 * 109.98896 * 118.28088 * 22 13 12 45 45 H 1.09002 * 109.47286 * 359.97438 * 28 27 2 46 46 H 1.09003 * 109.46911 * 179.97438 * 29 28 27 47 47 H 1.08996 * 109.47125 * 299.99777 * 29 28 27 48 48 H 1.08998 * 109.47045 * 60.00735 * 29 28 27 49 49 H 1.08996 * 109.46958 * 59.99622 * 30 28 27 50 50 H 1.08997 * 109.46865 * 179.97438 * 30 28 27 51 51 H 1.09002 * 109.46625 * 300.00027 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5026 0.0005 5 8 0.6928 2.7650 -0.1211 6 7 2.7743 3.4963 0.1358 7 6 4.1710 3.1717 0.4506 8 6 4.5783 4.0044 1.6734 9 6 4.3763 5.4704 1.3525 10 6 2.9044 5.7879 1.0845 11 1 2.3013 5.7484 1.9915 12 6 2.8418 7.1759 0.3855 13 7 3.2134 6.9058 -1.0164 14 6 3.7497 7.8135 -1.8901 15 1 4.0330 8.7959 -1.5420 16 6 3.9293 7.4712 -3.2233 17 7 3.7260 6.2321 -3.6178 18 14 4.4595 8.7692 -4.4576 19 1 5.9355 8.7285 -4.6156 20 1 3.8138 8.4996 -5.7675 21 1 4.0505 10.1113 -3.9712 22 6 2.9104 5.4966 -1.3193 23 6 2.3518 4.8751 -0.0311 24 1 1.2632 4.9270 -0.0432 25 7 3.5984 0.6788 -0.0059 26 7 3.6299 -0.6085 -0.0009 27 7 2.3104 -1.0826 -0.0005 28 6 1.8863 -2.4849 0.0001 29 6 2.4280 -3.1820 -1.2495 30 6 2.4301 -3.1817 1.2490 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 4.2611 2.1099 0.6799 35 1 4.8088 3.4219 -0.3972 36 1 3.9538 3.7342 2.5250 37 1 5.6250 3.8164 1.9125 38 1 4.9640 5.7213 0.4695 39 1 4.7243 6.0672 2.1956 40 1 1.8321 7.5831 0.4393 41 1 3.5542 7.8633 0.8416 42 1 3.8511 5.9930 -4.5494 43 1 3.8197 4.9764 -1.6202 44 1 2.1668 5.4379 -2.1142 45 1 0.7975 -2.5352 0.0014 46 1 2.1129 -4.2255 -1.2488 47 1 2.0406 -2.6857 -2.1392 48 1 3.5168 -3.1318 -1.2504 49 1 2.0442 -2.6850 2.1392 50 1 2.1142 -4.2249 1.2496 51 1 3.5189 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050174347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:55 Heat of formation + Delta-G solvation = 76.728662 kcal Electronic energy + Delta-G solvation = -32296.647967 eV Core-core repulsion = 28233.421143 eV Total energy + Delta-G solvation = -4063.226824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.43499 -41.48210 -39.35932 -37.45837 -36.77061 -34.54353 -34.02212 -33.52802 -32.16109 -30.97014 -29.41692 -28.49694 -28.26269 -27.19431 -25.85126 -24.94967 -24.05494 -23.17338 -22.01805 -21.32870 -21.10242 -19.56508 -18.88861 -18.36303 -17.48124 -17.32623 -17.19328 -16.68207 -16.02758 -15.98391 -15.68069 -15.50142 -15.20467 -15.06052 -14.77702 -14.39620 -14.26536 -14.13509 -14.01087 -13.99045 -13.59745 -13.53153 -13.23404 -13.20658 -13.17562 -13.02046 -12.90655 -12.71783 -12.59821 -12.52023 -12.25576 -12.13830 -12.07393 -11.98668 -11.76212 -11.54141 -11.40518 -11.16952 -11.12219 -10.78330 -10.67909 -10.23408 -9.51366 -8.89800 -7.85286 -5.20806 0.10650 0.55848 1.04373 1.43897 1.46381 1.55850 1.94532 2.15723 2.49631 3.08890 3.26244 3.33481 3.48850 3.60595 3.70787 3.76749 3.82405 3.95591 3.98621 4.04722 4.09221 4.10513 4.22672 4.28868 4.54016 4.55359 4.60422 4.62330 4.64852 4.70677 4.73630 4.76965 4.81599 4.89557 4.90060 4.97906 5.03569 5.08186 5.14573 5.19378 5.21489 5.25769 5.32973 5.42215 5.49254 5.56082 5.58540 5.63515 5.79888 6.15938 6.38402 6.84315 7.05749 7.11562 7.75512 8.41788 9.25097 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002946 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.474108 B = 9502.850152 C =10103.223217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.127 4.127 4 C 0.594 3.406 5 O -0.565 6.565 6 N -0.576 5.576 7 C 0.087 3.913 8 C -0.119 4.119 9 C -0.104 4.104 10 C -0.093 4.093 11 H 0.110 0.890 12 C 0.133 3.867 13 N -0.620 5.620 14 C -0.237 4.237 15 H 0.088 0.912 16 C -0.069 4.069 17 N -0.951 5.951 18 Si 0.978 3.022 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.265 1.265 22 C 0.198 3.802 23 C 0.128 3.872 24 H 0.081 0.919 25 N -0.223 5.223 26 N -0.083 5.083 27 N -0.342 5.342 28 C 0.131 3.869 29 C -0.161 4.161 30 C -0.158 4.158 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.243 0.757 43 H 0.011 0.989 44 H -0.004 1.004 45 H 0.143 0.857 46 H 0.115 0.885 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.113 0.887 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -22.090 13.956 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.266 4.266 4 C 0.382 3.618 5 O -0.445 6.445 6 N -0.305 5.305 7 C -0.035 4.035 8 C -0.157 4.157 9 C -0.142 4.142 10 C -0.113 4.113 11 H 0.128 0.872 12 C 0.008 3.992 13 N -0.347 5.347 14 C -0.366 4.366 15 H 0.106 0.894 16 C -0.262 4.262 17 N -0.600 5.600 18 Si 0.806 3.194 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.189 1.189 22 C 0.071 3.929 23 C 0.023 3.977 24 H 0.099 0.901 25 N -0.095 5.095 26 N -0.061 5.061 27 N -0.129 5.129 28 C 0.032 3.968 29 C -0.218 4.218 30 C -0.216 4.216 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.152 0.848 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.014 0.986 45 H 0.161 0.839 46 H 0.133 0.867 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.132 0.868 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.478 -22.383 13.686 26.615 hybrid contribution -0.352 1.165 -1.594 2.006 sum -4.829 -21.217 12.092 24.894 Atomic orbital electron populations 1.20806 0.82384 1.06247 1.05515 1.22270 0.97420 0.85635 0.95225 1.21101 0.89810 0.94975 1.20744 1.17190 0.85057 0.83499 0.76048 1.90694 1.16930 1.83959 1.52895 1.47285 1.10341 1.05132 1.67730 1.22643 0.79827 1.03671 0.97388 1.21599 1.02747 0.94379 0.96942 1.21112 0.94669 0.96981 1.01438 1.22587 0.97714 0.94070 0.96906 0.87166 1.21965 0.97739 0.95415 0.84087 1.44689 1.73501 1.07362 1.09139 1.19474 1.33311 0.94569 0.89227 0.89376 1.25716 1.02857 0.98515 0.99085 1.70243 1.56749 1.17826 1.15214 0.85066 0.77275 0.78873 0.78164 1.21379 1.22449 1.18920 1.20811 0.95938 0.84495 0.91649 1.21526 0.99179 0.80592 0.96417 0.90073 1.74358 1.19235 1.04436 1.11501 1.81818 0.98276 1.03049 1.22967 1.50948 1.05020 1.08461 1.48505 1.22241 1.02518 0.72934 0.99128 1.22175 1.02054 1.02559 0.95052 1.22164 1.02088 1.02462 0.94853 0.88218 0.86562 0.88875 0.84843 0.94167 0.90554 0.88829 0.94221 0.89847 0.95589 0.92424 0.94741 0.97040 0.98604 0.83939 0.86671 0.92742 0.92494 0.92007 0.86819 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.35 71.24 0.67 -0.85 16 2 C 0.13 3.20 7.02 41.72 0.29 3.49 16 3 C -0.13 -4.13 6.66 40.82 0.27 -3.86 16 4 C 0.59 22.83 7.63 86.69 0.66 23.49 16 5 O -0.57 -23.23 14.14 -4.01 -0.06 -23.29 16 6 N -0.58 -22.70 2.72 -799.37 -2.17 -24.87 16 7 C 0.09 3.09 5.77 86.47 0.50 3.59 16 8 C -0.12 -3.44 6.06 30.23 0.18 -3.25 16 9 C -0.10 -3.46 4.77 30.06 0.14 -3.32 16 10 C -0.09 -3.35 3.69 -9.48 -0.03 -3.38 16 11 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 12 C 0.13 5.59 6.54 87.05 0.57 6.16 16 13 N -0.62 -33.36 3.03 -691.32 -2.10 -35.46 16 14 C -0.24 -13.73 10.27 84.03 0.86 -12.86 16 15 H 0.09 4.80 7.84 -2.91 -0.02 4.78 16 16 C -0.07 -4.11 5.48 84.86 0.46 -3.65 16 17 N -0.95 -60.88 10.39 21.65 0.22 -60.65 16 18 Si 0.98 47.73 29.56 68.60 2.03 49.76 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 21 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.20 10.75 4.60 86.42 0.40 11.14 16 23 C 0.13 5.53 2.96 45.89 0.14 5.67 16 24 H 0.08 3.69 6.92 -2.39 -0.02 3.68 16 25 N -0.22 -7.30 8.74 -50.00 -0.44 -7.74 16 26 N -0.08 -2.31 13.67 37.02 0.51 -1.80 16 27 N -0.34 -7.03 3.28 -313.38 -1.03 -8.06 16 28 C 0.13 1.32 3.68 44.99 0.17 1.49 16 29 C -0.16 -1.54 9.47 71.98 0.68 -0.86 16 30 C -0.16 -1.22 9.47 71.98 0.68 -0.54 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 0.85 7.18 -2.39 -0.02 0.84 16 33 H 0.09 1.98 6.59 -2.39 -0.02 1.96 16 34 H 0.13 4.47 4.10 -47.27 -0.19 4.28 16 35 H 0.04 1.66 7.54 -2.38 -0.02 1.64 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.04 1.64 7.34 -2.39 -0.02 1.63 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.06 2.25 8.00 -2.39 -0.02 2.23 16 42 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.01 0.70 6.69 -2.39 -0.02 0.68 16 44 H 0.00 -0.27 7.38 -2.38 -0.02 -0.29 16 45 H 0.14 0.52 6.79 -2.39 -0.02 0.51 16 46 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -80.56 392.62 4.35 -76.20 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.75 Total: 13.45 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 6.64 Total: 22.45 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -5.00 Total: -138.58 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -80.56 4.35 -76.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050174347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.933 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds