Wall clock time and date at job start Wed Apr 1 2020 04:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 126.28960 * 2 1 4 4 C 1.47433 * 126.41539 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99786 * 0.33219 * 4 3 2 6 6 N 1.34777 * 120.00009 * 180.32933 * 4 3 2 7 7 C 1.47021 * 125.64710 * 359.69089 * 6 4 3 8 8 C 1.54318 * 107.27494 * 180.96569 * 7 6 4 9 9 C 1.55159 * 102.86129 * 22.52928 * 8 7 6 10 10 H 1.09002 * 111.03930 * 82.39223 * 9 8 7 11 11 N 1.46900 * 111.00243 * 206.22577 * 9 8 7 12 12 C 1.46900 * 111.00252 * 297.94885 * 11 9 8 13 13 C 1.53234 * 109.33914 * 172.74689 * 12 11 9 14 14 N 1.47079 * 108.52217 * 53.83639 * 13 12 11 15 15 C 1.36935 * 120.88401 * 128.83621 * 14 13 12 16 16 H 1.07998 * 120.00038 * 206.62901 * 15 14 13 17 17 C 1.38813 * 119.99863 * 26.62188 * 15 14 13 18 18 N 1.31614 * 120.00418 * 17.04360 * 17 15 14 19 19 Si 1.86801 * 119.99655 * 197.04127 * 17 15 14 20 20 H 1.48496 * 109.47483 * 60.00302 * 19 17 15 21 21 H 1.48505 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47203 * 299.99990 * 19 17 15 23 23 C 1.47082 * 118.23251 * 308.80962 * 14 13 12 24 24 C 1.46902 * 110.99522 * 173.65071 * 11 9 8 25 25 C 1.47428 * 125.64712 * 179.97438 * 6 4 3 26 26 C 1.41294 * 107.17023 * 180.25832 * 3 2 1 27 27 N 1.30448 * 108.02210 * 359.74439 * 26 3 2 28 28 N 1.34260 * 126.29664 * 179.81233 * 2 1 3 29 29 C 1.46500 * 125.75039 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47308 * 270.20632 * 1 2 3 31 31 H 1.08993 * 109.47245 * 30.21120 * 1 2 3 32 32 H 1.09004 * 109.46762 * 150.21262 * 1 2 3 33 33 H 1.08993 * 109.88372 * 300.51354 * 7 6 4 34 34 H 1.09005 * 109.88117 * 61.68445 * 7 6 4 35 35 H 1.08994 * 110.92925 * 264.11476 * 8 7 6 36 36 H 1.09002 * 110.74059 * 140.85525 * 8 7 6 37 37 H 1.08999 * 109.49505 * 292.70969 * 12 11 9 38 38 H 1.09001 * 109.48976 * 52.78696 * 12 11 9 39 39 H 1.08999 * 109.63361 * 294.12204 * 13 12 11 40 40 H 1.09006 * 109.78584 * 173.63722 * 13 12 11 41 41 H 0.96998 * 120.00242 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.63526 * 291.47417 * 23 14 13 43 43 H 1.09003 * 109.78424 * 170.99201 * 23 14 13 44 44 H 1.08992 * 109.49572 * 307.21244 * 24 11 9 45 45 H 1.09000 * 109.49347 * 67.29903 * 24 11 9 46 46 H 1.08997 * 110.36478 * 274.67168 * 25 6 4 47 47 H 1.08998 * 110.36673 * 36.89095 * 25 6 4 48 48 H 1.08004 * 125.98738 * 179.70666 * 26 3 2 49 49 H 1.09001 * 109.47384 * 269.71616 * 29 28 2 50 50 H 1.09000 * 109.47401 * 149.71359 * 29 28 2 51 51 H 1.09001 * 109.47409 * 29.71142 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7877 0.0051 6 7 2.7998 3.5108 -0.0072 7 6 4.2589 3.3301 -0.0079 8 6 4.8947 4.7361 0.0083 9 6 3.7634 5.6200 0.5967 10 1 3.7499 5.5651 1.6853 11 7 3.8931 7.0116 0.1442 12 6 5.1573 7.5998 0.6065 13 6 5.3383 8.9806 -0.0328 14 7 4.1392 9.7854 0.2461 15 6 4.2447 11.0420 0.7799 16 1 3.4344 11.4494 1.3663 17 6 5.3932 11.7922 0.5674 18 7 6.2259 11.4621 -0.3969 19 14 5.7568 13.2703 1.6502 20 1 5.8713 12.8319 3.0644 21 1 7.0337 13.8957 1.2216 22 1 4.6550 14.2581 1.5259 23 6 2.8239 9.2049 -0.0640 24 6 2.7419 7.8152 0.5766 25 6 2.5021 4.9547 -0.0090 26 6 3.6590 0.6499 -0.0061 27 7 3.6341 -0.6543 -0.0039 28 7 2.3018 -1.0821 0.0035 29 6 1.8502 -2.4757 0.0076 30 1 -0.3634 0.0037 1.0277 31 1 -0.3633 0.8880 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 4.5638 2.7731 0.8780 34 1 4.5660 2.7970 -0.9077 35 1 5.1511 5.0591 -1.0006 36 1 5.7735 4.7550 0.6529 37 1 5.1360 7.7014 1.6916 38 1 5.9862 6.9537 0.3175 39 1 5.4638 8.8718 -1.1101 40 1 6.2150 9.4711 0.3902 41 1 7.0286 11.9861 -0.5451 42 1 2.7076 9.1176 -1.1442 43 1 2.0356 9.8409 0.3388 44 1 1.8191 7.3254 0.2659 45 1 2.7542 7.9138 1.6620 46 1 2.3392 5.3070 -1.0275 47 1 1.6281 5.1626 0.6081 48 1 4.5449 1.2677 -0.0121 49 1 1.7427 -2.8199 1.0362 50 1 2.5826 -3.0965 -0.5086 51 1 0.8893 -2.5479 -0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051980780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:32 Heat of formation + Delta-G solvation = 93.034052 kcal Electronic energy + Delta-G solvation = -30932.094722 eV Core-core repulsion = 26869.574953 eV Total energy + Delta-G solvation = -4062.519770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.81559 -39.89421 -38.28387 -36.74373 -34.37922 -33.84166 -32.27871 -31.64969 -30.34810 -30.16115 -28.93163 -27.56483 -27.13729 -25.80539 -24.16547 -22.86094 -22.56208 -21.50004 -20.99700 -20.22206 -19.12272 -19.05962 -17.51778 -17.05107 -16.37109 -16.15300 -16.04461 -15.51793 -14.93222 -14.66108 -14.48748 -14.21514 -13.98025 -13.89562 -13.60193 -13.51905 -13.40139 -13.34286 -13.23880 -13.07684 -12.88324 -12.67533 -12.50071 -12.47769 -12.21637 -11.71123 -11.25246 -11.16384 -11.14809 -11.02116 -10.83811 -10.70927 -10.44142 -10.26988 -10.02651 -9.91939 -9.75940 -9.70407 -9.57907 -8.98698 -8.60683 -8.48862 -7.86982 -6.64885 -5.76607 -3.17394 1.21403 1.91225 1.96963 2.90547 3.31329 3.39661 3.45305 3.46543 4.03395 4.20187 4.27556 4.41724 4.51805 4.57763 4.60398 4.62825 4.76261 4.87203 4.94022 4.97643 5.10817 5.18741 5.26695 5.32841 5.41330 5.42859 5.49032 5.52010 5.71563 5.77764 5.86215 5.88407 5.92136 5.99624 6.04860 6.15252 6.18355 6.24975 6.30743 6.37116 6.47680 6.54769 6.71020 6.95484 7.21712 7.24884 7.47403 7.59308 7.64809 7.70767 7.82907 8.17593 8.45268 9.23142 9.86516 10.45001 11.32220 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.001959 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.317352 B =14286.910142 C =14866.209315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.156 3.844 3 C -0.293 4.293 4 C 0.611 3.389 5 O -0.550 6.550 6 N -0.612 5.612 7 C 0.097 3.903 8 C -0.125 4.125 9 C 0.068 3.932 10 H 0.050 0.950 11 N -0.520 5.520 12 C 0.037 3.963 13 C 0.178 3.822 14 N -0.595 5.595 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.149 3.851 24 C 0.042 3.958 25 C 0.120 3.880 26 C 0.072 3.928 27 N -0.301 5.301 28 N -0.365 5.365 29 C 0.096 3.904 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.200 0.800 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 -27.635 0.808 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.024 3.976 3 C -0.307 4.307 4 C 0.401 3.599 5 O -0.429 6.429 6 N -0.346 5.346 7 C -0.027 4.027 8 C -0.163 4.163 9 C -0.042 4.042 10 H 0.068 0.932 11 N -0.246 5.246 12 C -0.092 4.092 13 C 0.052 3.948 14 N -0.318 5.318 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.022 3.978 24 C -0.088 4.088 25 C -0.003 4.003 26 C -0.115 4.115 27 N -0.120 5.120 28 N -0.145 5.145 29 C -0.045 4.045 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.216 0.784 49 H 0.098 0.902 50 H 0.112 0.888 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.575 -28.673 0.246 29.419 hybrid contribution 0.000 1.380 1.458 2.007 sum -6.575 -27.294 1.704 28.126 Atomic orbital electron populations 1.20699 0.85973 1.04828 1.04225 1.21516 0.94928 0.86237 0.94921 1.19908 0.92921 0.93283 1.24638 1.16771 0.84430 0.82944 0.75708 1.90732 1.16049 1.83989 1.52133 1.48114 1.06408 1.06486 1.73572 1.22364 0.80412 0.98628 1.01280 1.22731 0.97749 0.92310 1.03491 1.22755 0.94311 0.90215 0.96876 0.93173 1.62020 1.03600 0.99362 1.59597 1.22906 0.89719 0.99073 0.97539 1.20866 0.91251 0.85644 0.97055 1.44111 0.99841 1.14358 1.73538 1.19152 1.02883 0.91418 1.24633 0.91720 1.25013 0.99547 0.97842 0.97337 1.70013 1.14007 1.41195 1.29619 0.86372 0.77390 0.82594 0.80421 1.21157 1.21639 1.20913 1.20966 0.89367 0.90569 0.96851 1.22671 0.92134 0.96241 0.97733 1.22213 0.97630 0.78285 1.02143 1.24745 0.97920 0.91952 0.96905 1.77214 0.95928 1.13442 1.25397 1.48386 1.04204 1.06356 1.55535 1.21967 1.01344 0.77355 1.03876 0.89463 0.87404 0.91141 0.91125 0.90843 0.88991 0.90027 0.95684 0.91869 0.95549 0.89322 0.93591 0.95617 0.92619 0.91797 0.95326 0.90125 0.90610 0.78359 0.90215 0.88815 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.56 36.01 0.34 -0.40 16 2 C 0.16 1.57 7.01 -81.60 -0.57 1.00 16 3 C -0.29 -3.43 6.09 -105.06 -0.64 -4.07 16 4 C 0.61 8.35 7.85 -12.52 -0.10 8.25 16 5 O -0.55 -8.87 15.10 5.28 0.08 -8.79 16 6 N -0.61 -7.62 3.33 -171.77 -0.57 -8.19 16 7 C 0.10 0.92 4.97 -3.07 -0.02 0.90 16 8 C -0.12 -1.35 5.35 -24.90 -0.13 -1.48 16 9 C 0.07 0.93 2.71 -65.55 -0.18 0.75 16 10 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 11 N -0.52 -8.77 4.53 -223.76 -1.01 -9.78 16 12 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 13 C 0.18 4.20 5.42 -3.61 -0.02 4.18 16 14 N -0.60 -14.96 3.04 -172.01 -0.52 -15.48 16 15 C -0.25 -6.90 9.63 -15.06 -0.15 -7.04 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 18 N -0.90 -26.08 11.15 55.49 0.62 -25.46 16 19 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.15 3.16 6.69 -3.60 -0.02 3.14 16 24 C 0.04 0.74 5.48 -3.70 -0.02 0.72 16 25 C 0.12 1.62 5.32 -2.52 -0.01 1.60 16 26 C 0.07 0.74 10.45 -16.98 -0.18 0.57 16 27 N -0.30 -3.29 12.50 30.86 0.39 -2.91 16 28 N -0.37 -3.31 3.98 -63.34 -0.25 -3.56 16 29 C 0.10 0.41 11.25 59.85 0.67 1.08 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.04 6.52 -51.93 -0.34 0.70 16 32 H 0.07 0.32 7.05 -51.93 -0.37 -0.04 16 33 H 0.07 0.57 6.86 -51.93 -0.36 0.21 16 34 H 0.07 0.59 6.97 -51.93 -0.36 0.23 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 1.03 6.87 -51.93 -0.36 0.67 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 2.32 6.11 -51.93 -0.32 2.01 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 44 H 0.06 1.00 6.79 -51.93 -0.35 0.64 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 48 H 0.20 1.56 4.47 -52.48 -0.23 1.33 16 49 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.09 0.18 7.01 -51.93 -0.36 -0.18 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -34.02 392.60 -9.56 -43.59 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.05 Total: -1.74 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.12 Total: 9.78 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -1.35 Total: -65.39 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.02 -9.56 -43.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051980780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.621 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds