Wall clock time and date at job start Wed Apr 1 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 126.28960 * 2 1 4 4 C 1.47433 * 126.41539 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99786 * 0.33219 * 4 3 2 6 6 N 1.34777 * 120.00009 * 180.32933 * 4 3 2 7 7 C 1.47021 * 125.64710 * 359.69089 * 6 4 3 8 8 C 1.54318 * 107.27494 * 180.96569 * 7 6 4 9 9 C 1.55159 * 102.86129 * 22.52928 * 8 7 6 10 10 H 1.09002 * 111.03930 * 82.39223 * 9 8 7 11 11 N 1.46900 * 111.00243 * 206.22577 * 9 8 7 12 12 C 1.46900 * 111.00252 * 297.94885 * 11 9 8 13 13 C 1.53234 * 109.33914 * 172.74689 * 12 11 9 14 14 N 1.47079 * 108.52217 * 53.83639 * 13 12 11 15 15 C 1.36935 * 120.88401 * 128.83621 * 14 13 12 16 16 H 1.07998 * 120.00038 * 206.62901 * 15 14 13 17 17 C 1.38813 * 119.99863 * 26.62188 * 15 14 13 18 18 N 1.31614 * 120.00418 * 17.04360 * 17 15 14 19 19 Si 1.86801 * 119.99655 * 197.04127 * 17 15 14 20 20 H 1.48496 * 109.47483 * 60.00302 * 19 17 15 21 21 H 1.48505 * 109.46914 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47203 * 299.99990 * 19 17 15 23 23 C 1.47082 * 118.23251 * 308.80962 * 14 13 12 24 24 C 1.46902 * 110.99522 * 173.65071 * 11 9 8 25 25 C 1.47428 * 125.64712 * 179.97438 * 6 4 3 26 26 C 1.41294 * 107.17023 * 180.25832 * 3 2 1 27 27 N 1.30448 * 108.02210 * 359.74439 * 26 3 2 28 28 N 1.34260 * 126.29664 * 179.81233 * 2 1 3 29 29 C 1.46500 * 125.75039 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47308 * 270.20632 * 1 2 3 31 31 H 1.08993 * 109.47245 * 30.21120 * 1 2 3 32 32 H 1.09004 * 109.46762 * 150.21262 * 1 2 3 33 33 H 1.08993 * 109.88372 * 300.51354 * 7 6 4 34 34 H 1.09005 * 109.88117 * 61.68445 * 7 6 4 35 35 H 1.08994 * 110.92925 * 264.11476 * 8 7 6 36 36 H 1.09002 * 110.74059 * 140.85525 * 8 7 6 37 37 H 1.08999 * 109.49505 * 292.70969 * 12 11 9 38 38 H 1.09001 * 109.48976 * 52.78696 * 12 11 9 39 39 H 1.08999 * 109.63361 * 294.12204 * 13 12 11 40 40 H 1.09006 * 109.78584 * 173.63722 * 13 12 11 41 41 H 0.96998 * 120.00242 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.63526 * 291.47417 * 23 14 13 43 43 H 1.09003 * 109.78424 * 170.99201 * 23 14 13 44 44 H 1.08992 * 109.49572 * 307.21244 * 24 11 9 45 45 H 1.09000 * 109.49347 * 67.29903 * 24 11 9 46 46 H 1.08997 * 110.36478 * 274.67168 * 25 6 4 47 47 H 1.08998 * 110.36673 * 36.89095 * 25 6 4 48 48 H 1.08004 * 125.98738 * 179.70666 * 26 3 2 49 49 H 1.09001 * 109.47384 * 269.71616 * 29 28 2 50 50 H 1.09000 * 109.47401 * 149.71359 * 29 28 2 51 51 H 1.09001 * 109.47409 * 29.71142 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7877 0.0051 6 7 2.7998 3.5108 -0.0072 7 6 4.2589 3.3301 -0.0079 8 6 4.8947 4.7361 0.0083 9 6 3.7634 5.6200 0.5967 10 1 3.7499 5.5651 1.6853 11 7 3.8931 7.0116 0.1442 12 6 5.1573 7.5998 0.6065 13 6 5.3383 8.9806 -0.0328 14 7 4.1392 9.7854 0.2461 15 6 4.2447 11.0420 0.7799 16 1 3.4344 11.4494 1.3663 17 6 5.3932 11.7922 0.5674 18 7 6.2259 11.4621 -0.3969 19 14 5.7568 13.2703 1.6502 20 1 5.8713 12.8319 3.0644 21 1 7.0337 13.8957 1.2216 22 1 4.6550 14.2581 1.5259 23 6 2.8239 9.2049 -0.0640 24 6 2.7419 7.8152 0.5766 25 6 2.5021 4.9547 -0.0090 26 6 3.6590 0.6499 -0.0061 27 7 3.6341 -0.6543 -0.0039 28 7 2.3018 -1.0821 0.0035 29 6 1.8502 -2.4757 0.0076 30 1 -0.3634 0.0037 1.0277 31 1 -0.3633 0.8880 -0.5171 32 1 -0.3633 -0.8919 -0.5106 33 1 4.5638 2.7731 0.8780 34 1 4.5660 2.7970 -0.9077 35 1 5.1511 5.0591 -1.0006 36 1 5.7735 4.7550 0.6529 37 1 5.1360 7.7014 1.6916 38 1 5.9862 6.9537 0.3175 39 1 5.4638 8.8718 -1.1101 40 1 6.2150 9.4711 0.3902 41 1 7.0286 11.9861 -0.5451 42 1 2.7076 9.1176 -1.1442 43 1 2.0356 9.8409 0.3388 44 1 1.8191 7.3254 0.2659 45 1 2.7542 7.9138 1.6620 46 1 2.3392 5.3070 -1.0275 47 1 1.6281 5.1626 0.6081 48 1 4.5449 1.2677 -0.0121 49 1 1.7427 -2.8199 1.0362 50 1 2.5826 -3.0965 -0.5086 51 1 0.8893 -2.5479 -0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051980780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:31 Heat of formation + Delta-G solvation = 69.584544 kcal Electronic energy + Delta-G solvation = -30933.111569 eV Core-core repulsion = 26869.574953 eV Total energy + Delta-G solvation = -4063.536617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.55165 -40.92971 -39.60200 -38.04137 -35.85922 -34.66060 -33.36899 -32.93429 -31.80519 -31.55144 -30.00815 -28.58187 -27.80907 -27.24887 -25.33696 -24.51948 -23.96536 -22.40477 -21.89942 -21.31544 -20.77643 -19.88979 -18.80286 -18.33827 -17.55669 -16.99353 -16.79957 -16.77463 -16.41964 -15.88004 -15.61006 -15.48962 -15.27378 -15.12672 -15.07160 -14.86550 -14.57086 -14.23909 -14.06085 -13.90442 -13.81132 -13.59065 -13.41725 -13.39020 -13.20853 -13.02701 -12.95289 -12.61855 -12.50992 -12.43120 -12.12945 -11.99806 -11.90715 -11.83294 -11.78297 -11.41309 -11.34263 -10.91129 -10.55924 -10.42084 -9.85400 -9.49540 -9.29252 -8.66079 -7.85926 -5.30123 0.45822 1.11982 1.39149 1.47878 1.49766 1.56813 1.96185 2.38924 2.52216 2.98046 3.29143 3.33449 3.57577 3.59113 3.69169 3.72512 3.94457 4.04135 4.10459 4.21306 4.28646 4.31868 4.35556 4.36923 4.42967 4.45878 4.58600 4.60778 4.63340 4.66465 4.68509 4.71283 4.78178 4.90599 4.92298 4.93766 5.04222 5.05960 5.10008 5.20713 5.24091 5.28776 5.39843 5.41975 5.62852 5.73192 5.87546 6.16034 6.26910 6.39435 6.48198 6.55823 7.15646 7.18674 7.86089 8.40077 9.20595 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.001959 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.317352 B =14286.910142 C =14866.209315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.156 3.844 3 C -0.322 4.322 4 C 0.606 3.394 5 O -0.585 6.585 6 N -0.614 5.614 7 C 0.097 3.903 8 C -0.118 4.118 9 C 0.071 3.929 10 H 0.052 0.948 11 N -0.526 5.526 12 C 0.055 3.945 13 C 0.184 3.816 14 N -0.614 5.614 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.145 3.855 24 C 0.054 3.946 25 C 0.125 3.875 26 C 0.075 3.925 27 N -0.324 5.324 28 N -0.361 5.361 29 C 0.083 3.917 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.018 0.982 38 H 0.091 0.909 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.251 0.749 42 H 0.016 0.984 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.023 0.977 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.219 0.781 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -30.210 1.637 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.022 3.978 3 C -0.336 4.336 4 C 0.398 3.602 5 O -0.467 6.467 6 N -0.346 5.346 7 C -0.025 4.025 8 C -0.156 4.156 9 C -0.038 4.038 10 H 0.070 0.930 11 N -0.251 5.251 12 C -0.074 4.074 13 C 0.058 3.942 14 N -0.338 5.338 15 C -0.395 4.395 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.203 1.203 23 C 0.019 3.981 24 C -0.075 4.075 25 C 0.002 3.998 26 C -0.112 4.112 27 N -0.143 5.143 28 N -0.140 5.140 29 C -0.056 4.056 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.037 0.963 38 H 0.110 0.890 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.041 0.959 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.235 0.765 49 H 0.113 0.887 50 H 0.119 0.881 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.637 -31.298 1.080 32.012 hybrid contribution -0.064 2.094 1.148 2.389 sum -6.701 -29.205 2.228 30.046 Atomic orbital electron populations 1.20722 0.84488 1.05323 1.04811 1.21871 0.95946 0.86266 0.93744 1.19918 0.94092 0.92595 1.27038 1.17108 0.84088 0.83847 0.75123 1.90705 1.17485 1.84608 1.53931 1.48157 1.07665 1.05675 1.73151 1.22541 0.78432 0.98208 1.03289 1.22739 0.97426 0.92126 1.03331 1.22745 0.95812 0.88238 0.97022 0.93005 1.61928 1.02462 1.00876 1.59867 1.22571 0.91656 0.96728 0.96453 1.20658 0.89929 0.88040 0.95537 1.44400 1.01498 1.14215 1.73712 1.19473 1.03017 0.92465 1.24536 0.91742 1.25765 0.99519 1.00706 0.98564 1.70170 1.14282 1.42405 1.31107 0.85341 0.76941 0.79406 0.78731 1.20521 1.21864 1.20294 1.21090 0.87805 0.92589 0.96570 1.22464 0.93606 0.94519 0.96930 1.22020 0.97193 0.79354 1.01204 1.25015 0.98025 0.91977 0.96170 1.77163 0.97275 1.13708 1.26169 1.48737 1.03458 1.07649 1.54177 1.22397 1.02751 0.75060 1.05400 0.88696 0.89702 0.87807 0.89009 0.88934 0.89517 0.88111 0.96328 0.89037 0.98184 0.92352 0.94019 0.96586 0.92409 0.89501 0.95866 0.91198 0.91743 0.76501 0.88732 0.88105 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.56 71.24 0.68 -0.60 16 2 C 0.16 2.87 7.01 42.14 0.30 3.17 16 3 C -0.32 -7.13 6.09 -20.15 -0.12 -7.25 16 4 C 0.61 16.19 7.85 86.67 0.68 16.87 16 5 O -0.59 -19.06 15.10 -4.04 -0.06 -19.12 16 6 N -0.61 -14.48 3.33 -815.63 -2.71 -17.20 16 7 C 0.10 1.59 4.97 86.73 0.43 2.02 16 8 C -0.12 -2.24 5.35 31.78 0.17 -2.07 16 9 C 0.07 1.81 2.71 46.32 0.13 1.93 16 10 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 11 N -0.53 -17.25 4.53 -861.86 -3.90 -21.16 16 12 C 0.05 2.00 5.48 86.38 0.47 2.48 16 13 C 0.18 8.91 5.42 86.35 0.47 9.38 16 14 N -0.61 -31.53 3.04 -698.13 -2.12 -33.65 16 15 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 16 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 17 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 18 N -0.93 -55.32 11.15 21.65 0.24 -55.08 16 19 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.15 6.23 6.69 86.35 0.58 6.81 16 24 C 0.05 1.89 5.48 86.38 0.47 2.36 16 25 C 0.13 3.28 5.32 86.86 0.46 3.74 16 26 C 0.07 1.40 10.45 85.65 0.89 2.29 16 27 N -0.32 -6.43 12.50 -56.27 -0.70 -7.13 16 28 N -0.36 -5.72 3.98 -354.31 -1.41 -7.13 16 29 C 0.08 0.47 11.25 127.77 1.44 1.90 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.60 6.52 -2.39 -0.02 1.58 16 32 H 0.10 0.63 7.05 -2.38 -0.02 0.61 16 33 H 0.09 1.17 6.86 -2.39 -0.02 1.15 16 34 H 0.09 1.21 6.97 -2.38 -0.02 1.20 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 2.81 6.87 -2.39 -0.02 2.80 16 39 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.06 3.16 6.11 -2.38 -0.01 3.15 16 41 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 44 H 0.09 2.64 6.79 -2.39 -0.02 2.62 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.82 7.74 -2.39 -0.02 1.81 16 48 H 0.22 2.81 4.47 -2.91 -0.01 2.80 16 49 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.12 0.04 7.01 -2.39 -0.02 0.03 16 Total: -1.00 -76.08 392.60 0.57 -75.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.93 Total: 11.16 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 8.27 Total: 26.66 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -10.61 Total: -141.34 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.06 Total: -19.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.08 0.57 -75.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051980780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.097 kcal (2) G-P(sol) polarization free energy of solvation -76.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds