Wall clock time and date at job start Wed Apr 1 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47021 * 2 1 4 4 C 1.35370 * 126.38766 * 85.00618 * 3 2 1 5 5 C 1.41497 * 105.50259 * 179.97438 * 4 3 2 6 6 C 1.47716 * 126.51431 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00053 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99768 * 180.02562 * 6 5 4 9 9 C 1.47016 * 125.64970 * 359.69032 * 8 6 5 10 10 C 1.54342 * 107.26693 * 178.85177 * 9 8 6 11 11 C 1.55156 * 103.01719 * 338.13709 * 10 9 8 12 12 H 1.08995 * 111.04357 * 277.22145 * 11 10 9 13 13 N 1.46901 * 111.00253 * 153.37829 * 11 10 9 14 14 C 1.46893 * 111.00194 * 186.41239 * 13 11 10 15 15 C 1.53238 * 109.34022 * 172.75085 * 14 13 11 16 16 N 1.47075 * 108.52335 * 53.83090 * 15 14 13 17 17 C 1.36943 * 120.88399 * 128.79205 * 16 15 14 18 18 H 1.07999 * 119.99823 * 209.23274 * 17 16 15 19 19 C 1.38818 * 119.99597 * 29.23443 * 17 16 15 20 20 N 1.31614 * 120.00099 * 13.11269 * 19 17 16 21 21 Si 1.86801 * 119.99634 * 193.11194 * 19 17 16 22 22 H 1.48494 * 109.47383 * 90.00138 * 21 19 17 23 23 H 1.48504 * 109.46852 * 210.00137 * 21 19 17 24 24 H 1.48505 * 109.47158 * 329.99612 * 21 19 17 25 25 C 1.47081 * 118.23613 * 308.81388 * 16 15 14 26 26 C 1.46901 * 110.99712 * 62.11105 * 13 11 10 27 27 C 1.47427 * 125.64816 * 180.02562 * 8 6 5 28 28 N 1.31806 * 106.96967 * 359.97438 * 5 4 3 29 29 N 1.28467 * 110.06882 * 359.72227 * 28 5 4 30 30 H 0.97001 * 124.88599 * 180.29183 * 29 28 5 31 31 H 1.08998 * 109.47101 * 59.99229 * 1 2 3 32 32 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46759 * 300.00013 * 1 2 3 34 34 H 1.09000 * 109.46759 * 239.99987 * 2 1 3 35 35 H 1.08995 * 109.47286 * 120.00282 * 2 1 3 36 36 H 1.07997 * 127.24167 * 359.97438 * 4 3 2 37 37 H 1.09002 * 109.88604 * 298.39342 * 9 8 6 38 38 H 1.08998 * 109.88486 * 59.56142 * 9 8 6 39 39 H 1.09000 * 110.85032 * 219.67696 * 10 9 8 40 40 H 1.08999 * 110.51733 * 96.45082 * 10 9 8 41 41 H 1.09001 * 109.49713 * 292.70712 * 14 13 11 42 42 H 1.09003 * 109.49485 * 52.78931 * 14 13 11 43 43 H 1.08997 * 109.62952 * 294.11806 * 15 14 13 44 44 H 1.09003 * 109.63016 * 173.54217 * 15 14 13 45 45 H 0.97003 * 120.00121 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.62943 * 291.47595 * 25 16 15 47 47 H 1.09006 * 109.62726 * 170.89172 * 25 16 15 48 48 H 1.09000 * 109.49492 * 307.21732 * 26 13 11 49 49 H 1.09003 * 109.49180 * 67.27072 * 26 13 11 50 50 H 1.09007 * 110.36244 * 322.92959 * 27 8 6 51 51 H 1.09004 * 110.36733 * 85.14067 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2096 1.0856 5 6 2.6932 3.4411 0.5832 6 6 3.0424 4.6376 1.3760 7 8 2.9231 4.6213 2.5857 8 7 3.4922 5.7476 0.7581 9 6 3.6884 5.9020 -0.6907 10 6 4.1860 7.3425 -0.9348 11 6 3.7109 8.0963 0.3354 12 1 2.6687 8.4015 0.2424 13 7 4.5725 9.2528 0.6145 14 6 4.2180 9.8763 1.8965 15 6 5.2481 10.9586 2.2365 16 7 5.3439 11.8863 1.0993 17 6 5.2327 13.2386 1.2840 18 1 4.8387 13.8610 0.4942 19 6 5.6266 13.8095 2.4866 20 7 6.3379 13.1103 3.3452 21 14 5.1468 15.5701 2.8860 22 1 3.8420 15.5790 3.5948 23 1 6.1856 16.1815 3.7534 24 1 5.0317 16.3495 1.6272 25 6 5.5616 11.3230 -0.2418 26 6 4.5191 10.2263 -0.4843 27 6 3.8757 7.0060 1.4237 28 7 2.7719 3.3178 -0.7268 29 7 2.3954 2.1421 -1.0823 30 1 2.3725 1.8199 -1.9969 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0237 1.9528 2.1178 37 1 4.4316 5.1864 -1.0426 38 1 2.7439 5.7449 -1.2116 39 1 3.7270 7.7653 -1.8284 40 1 5.2731 7.3632 -1.0116 41 1 3.2285 10.3271 1.8204 42 1 4.2138 9.1190 2.6804 43 1 6.2191 10.4967 2.4150 44 1 4.9287 11.5016 3.1261 45 1 6.6128 13.5090 4.1857 46 1 6.5627 10.8962 -0.3015 47 1 5.4494 12.1069 -0.9909 48 1 4.7333 9.7229 -1.4270 49 1 3.5253 10.6719 -0.5275 50 1 3.2129 7.2070 2.2655 51 1 4.9112 6.9567 1.7604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051985977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:46 Heat of formation + Delta-G solvation = 77.224914 kcal Electronic energy + Delta-G solvation = -30602.520312 eV Core-core repulsion = 26539.315007 eV Total energy + Delta-G solvation = -4063.205305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.02042 -39.96560 -38.33001 -36.69285 -34.81222 -34.10266 -32.29341 -31.47556 -30.67747 -29.87973 -29.52767 -28.48082 -26.13526 -24.55708 -24.20398 -23.05272 -22.79115 -21.74820 -21.40905 -20.30592 -19.10825 -19.05696 -18.04780 -17.02626 -16.95746 -16.33085 -15.92941 -15.37610 -14.94875 -14.85928 -14.58799 -14.34942 -14.17603 -13.94917 -13.77666 -13.71109 -13.42437 -13.32703 -13.05216 -12.97949 -12.68978 -12.52878 -12.29065 -12.12736 -11.78254 -11.63349 -11.40370 -11.17642 -11.00018 -10.93508 -10.81241 -10.71895 -10.38983 -10.27128 -10.17037 -9.99225 -9.71007 -9.70076 -9.55027 -9.31829 -8.64414 -8.47931 -7.84796 -6.59462 -5.74367 -3.19483 1.33244 1.77658 2.44551 2.90630 3.28990 3.39942 3.46425 3.47726 4.02189 4.17765 4.30616 4.35645 4.52611 4.58509 4.70529 4.73174 4.91371 5.01562 5.11874 5.17652 5.31231 5.34412 5.35386 5.39356 5.44466 5.52930 5.59922 5.65454 5.67855 5.81398 5.88124 5.91749 5.97109 6.01771 6.04280 6.14798 6.20816 6.24298 6.35737 6.38263 6.56741 6.61952 6.73615 6.96039 7.28035 7.40466 7.53282 7.61632 7.68821 7.74425 7.84705 8.09866 8.48880 9.25431 9.87602 10.47252 11.34142 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031509 B = 0.001878 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.412161 B =14903.898681 C =15423.664180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.015 3.985 4 C -0.175 4.175 5 C -0.003 4.003 6 C 0.614 3.386 7 O -0.533 6.533 8 N -0.604 5.604 9 C 0.114 3.886 10 C -0.125 4.125 11 C 0.069 3.931 12 H 0.050 0.950 13 N -0.520 5.520 14 C 0.032 3.968 15 C 0.180 3.820 16 N -0.595 5.595 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.149 3.851 26 C 0.045 3.955 27 C 0.117 3.883 28 N -0.253 5.253 29 N -0.382 5.382 30 H 0.443 0.557 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.088 0.912 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.027 0.973 50 H 0.078 0.922 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -27.097 -11.543 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.203 4.203 5 C -0.164 4.164 6 C 0.401 3.599 7 O -0.408 6.408 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.163 4.163 11 C -0.041 4.041 12 H 0.068 0.932 13 N -0.246 5.246 14 C -0.097 4.097 15 C 0.054 3.946 16 N -0.319 5.319 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.022 3.978 26 C -0.084 4.084 27 C -0.005 4.005 28 N -0.089 5.089 29 N -0.096 5.096 30 H 0.288 0.712 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.180 0.820 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.045 0.955 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.174 -26.623 -11.559 30.439 hybrid contribution -1.292 0.582 0.299 1.448 sum -10.465 -26.041 -11.261 30.240 Atomic orbital electron populations 1.21788 0.93936 1.02328 1.02732 1.20124 0.96503 0.88620 1.04050 1.21451 1.05340 0.96950 0.87326 1.21503 1.06658 0.92239 0.99865 1.21849 1.08035 0.96656 0.89846 1.16480 0.77193 0.80347 0.85901 1.90815 1.54601 1.82407 1.12973 1.48222 1.63962 1.12802 1.08817 1.22052 1.01286 0.97170 0.80411 1.22751 1.02753 0.93074 0.97762 1.22739 0.95430 0.91563 0.94322 0.93183 1.62016 1.51259 1.07588 1.03718 1.22970 0.99348 0.97787 0.89593 1.20857 0.94244 0.87806 0.91740 1.44086 1.83831 1.02574 1.01365 1.19186 1.35411 0.82975 1.00667 0.91791 1.25110 0.97790 0.97725 0.98953 1.69990 1.38059 1.36602 1.10157 0.86270 0.77698 0.84629 0.78012 1.21509 1.21707 1.20493 1.20980 0.94873 0.92948 0.88964 1.22629 0.99422 0.93649 0.92702 1.22276 1.01625 0.81161 0.95457 1.73690 1.18076 1.02102 1.15077 1.43368 1.47651 1.08703 1.09913 0.71231 0.92692 0.91676 0.91795 0.90619 0.88952 0.82036 0.90930 0.91145 0.90295 0.89327 0.95609 0.91881 0.95454 0.89386 0.93590 0.95639 0.92663 0.91839 0.95464 0.90368 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.89 37.16 0.37 -0.17 16 2 C -0.05 -0.20 6.49 -27.88 -0.18 -0.38 16 3 C 0.01 0.10 6.48 -82.21 -0.53 -0.43 16 4 C -0.17 -1.78 10.73 -39.36 -0.42 -2.20 16 5 C 0.00 -0.04 6.98 -82.77 -0.58 -0.61 16 6 C 0.61 9.28 7.86 -12.39 -0.10 9.18 16 7 O -0.53 -9.63 17.18 5.30 0.09 -9.54 16 8 N -0.60 -8.42 3.33 -171.65 -0.57 -8.99 16 9 C 0.11 1.29 5.54 -3.06 -0.02 1.27 16 10 C -0.13 -1.45 5.34 -24.89 -0.13 -1.59 16 11 C 0.07 1.00 2.72 -65.55 -0.18 0.82 16 12 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 13 N -0.52 -9.09 4.53 -223.77 -1.01 -10.10 16 14 C 0.03 0.63 5.48 -3.70 -0.02 0.61 16 15 C 0.18 4.38 5.38 -3.61 -0.02 4.36 16 16 N -0.60 -15.14 3.03 -172.01 -0.52 -15.66 16 17 C -0.25 -7.00 9.63 -15.05 -0.14 -7.14 16 18 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 19 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 20 N -0.90 -26.49 11.11 55.49 0.62 -25.88 16 21 Si 0.90 21.91 29.57 -169.99 -5.03 16.88 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 26 C 0.05 0.79 5.48 -3.70 -0.02 0.77 16 27 C 0.12 1.74 5.31 -2.52 -0.01 1.73 16 28 N -0.25 -2.59 9.76 33.42 0.33 -2.27 16 29 N -0.38 -2.63 6.83 33.50 0.23 -2.40 16 30 H 0.44 1.39 8.96 -190.44 -1.71 -0.31 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 38 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 39 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.15 6.79 -51.93 -0.35 0.80 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.38 6.20 -51.93 -0.32 2.06 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 48 H 0.06 0.93 6.87 -51.93 -0.36 0.57 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 1.23 7.74 -51.93 -0.40 0.83 16 51 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -33.77 401.48 -11.73 -45.50 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -9.81 Total: -2.93 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -2.10 Total: 9.33 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.93 Total: -65.29 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.77 -11.73 -45.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051985977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.728 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds