Wall clock time and date at job start Wed Apr 1 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39679 * 126.07047 * 2 1 4 4 C 1.38405 * 105.35981 * 179.78792 * 3 2 1 5 5 C 1.47159 * 126.88576 * 180.23400 * 4 3 2 6 6 O 1.21623 * 120.00010 * 181.14804 * 5 4 3 7 7 N 1.34778 * 119.99897 * 1.14241 * 5 4 3 8 8 C 1.47021 * 125.64923 * 5.15018 * 7 5 4 9 9 C 1.54334 * 107.26578 * 178.85311 * 8 7 5 10 10 C 1.55155 * 103.02009 * 338.14054 * 9 8 7 11 11 H 1.09004 * 111.03775 * 277.22254 * 10 9 8 12 12 N 1.46896 * 111.00397 * 153.38283 * 10 9 8 13 13 C 1.46896 * 111.00137 * 185.95602 * 12 10 9 14 14 C 1.53239 * 109.34152 * 172.74842 * 13 12 10 15 15 N 1.47074 * 108.52131 * 53.82747 * 14 13 12 16 16 C 1.36942 * 120.87876 * 128.79851 * 15 14 13 17 17 H 1.08000 * 119.99803 * 207.94396 * 16 15 14 18 18 C 1.38809 * 120.00314 * 27.93550 * 16 15 14 19 19 N 1.31620 * 119.99774 * 15.37417 * 18 16 15 20 20 Si 1.86798 * 120.00393 * 195.36576 * 18 16 15 21 21 H 1.48502 * 109.46819 * 94.98148 * 20 18 16 22 22 H 1.48490 * 109.47325 * 214.98152 * 20 18 16 23 23 H 1.48508 * 109.46982 * 334.98323 * 20 18 16 24 24 C 1.47083 * 118.24101 * 308.81508 * 15 14 13 25 25 C 1.46899 * 111.00150 * 61.65433 * 12 10 9 26 26 C 1.47426 * 125.64713 * 185.46286 * 7 5 4 27 27 N 1.36605 * 106.22936 * 0.36808 * 4 3 2 28 28 C 1.46505 * 125.18811 * 179.88197 * 27 4 3 29 29 N 1.28444 * 109.61893 * 359.61590 * 27 4 3 30 30 H 1.08996 * 109.47392 * 269.99956 * 1 2 3 31 31 H 1.09007 * 109.46916 * 29.99879 * 1 2 3 32 32 H 1.08995 * 109.47347 * 149.99543 * 1 2 3 33 33 H 1.08001 * 127.31982 * 0.05040 * 3 2 1 34 34 H 1.09005 * 109.88415 * 298.39694 * 8 7 5 35 35 H 1.08998 * 109.87920 * 59.55888 * 8 7 5 36 36 H 1.09005 * 110.84382 * 219.67427 * 9 8 7 37 37 H 1.08993 * 110.51470 * 96.45596 * 9 8 7 38 38 H 1.08995 * 109.49253 * 292.70551 * 13 12 10 39 39 H 1.09000 * 109.49579 * 52.78557 * 13 12 10 40 40 H 1.09005 * 109.62765 * 294.11897 * 14 13 12 41 41 H 1.09001 * 109.62824 * 173.54176 * 14 13 12 42 42 H 0.97003 * 120.00143 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.62872 * 291.47407 * 24 15 14 44 44 H 1.08996 * 109.62537 * 170.89298 * 24 15 14 45 45 H 1.09000 * 109.49173 * 307.21704 * 25 12 10 46 46 H 1.09000 * 109.49451 * 67.26281 * 25 12 10 47 47 H 1.08997 * 110.36437 * 322.92653 * 26 7 5 48 48 H 1.09002 * 110.36856 * 85.14515 * 26 7 5 49 49 H 1.08998 * 109.46668 * 275.48425 * 28 27 4 50 50 H 1.09001 * 109.46805 * 155.48403 * 28 27 4 51 51 H 1.09003 * 109.46891 * 35.47752 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6396 0.0049 5 6 4.8664 1.4282 0.0117 6 8 5.9443 0.8650 -0.0055 7 7 4.8099 2.7745 0.0370 8 6 3.5858 3.5784 0.1667 9 6 4.0111 5.0620 0.1772 10 6 5.4986 4.9961 0.6134 11 1 5.5857 4.9256 1.6976 12 7 6.2490 6.1507 0.1017 13 6 7.6826 6.0181 0.3933 14 6 8.4496 7.1432 -0.3095 15 7 7.8523 8.4297 0.0795 16 6 8.6309 9.4509 0.5550 17 1 8.2116 10.1784 1.2342 18 6 9.9591 9.5510 0.1642 19 7 10.3924 8.8696 -0.8751 20 14 11.1315 10.6530 1.1132 21 1 11.8589 9.8462 2.1257 22 1 12.1059 11.2641 0.1741 23 1 10.3615 11.7247 1.7943 24 6 6.3965 8.5902 -0.0554 25 6 5.7103 7.4080 0.6374 26 6 5.9646 3.6851 -0.0675 27 7 3.5173 -0.7223 -0.0008 28 6 4.6450 -1.6575 -0.0009 29 7 2.2774 -1.0578 -0.0005 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 2.0207 2.1640 0.0008 34 1 2.9247 3.3863 -0.6784 35 1 3.0787 3.3335 1.0999 36 1 3.4225 5.6292 0.8983 37 1 3.9203 5.4924 -0.8200 38 1 7.8426 6.0857 1.4693 39 1 8.0396 5.0536 0.0320 40 1 8.3763 7.0172 -1.3897 41 1 9.4961 7.1185 -0.0053 42 1 11.3206 8.9392 -1.1480 43 1 6.1258 8.6033 -1.1111 44 1 6.0856 9.5220 0.4168 45 1 4.6369 7.4516 0.4531 46 1 5.8974 7.4561 1.7101 47 1 6.8242 3.2694 0.4582 48 1 6.2117 3.8660 -1.1136 49 1 4.9906 -1.8097 -1.0234 50 1 4.3264 -2.6109 0.4207 51 1 5.4570 -1.2476 0.5998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051992608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:38 Heat of formation + Delta-G solvation = 94.839223 kcal Electronic energy + Delta-G solvation = -31034.751274 eV Core-core repulsion = 26972.309783 eV Total energy + Delta-G solvation = -4062.441492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.84586 -40.17597 -38.48142 -36.92847 -34.50467 -34.09135 -32.09619 -31.11876 -30.81360 -29.97864 -29.69508 -28.53274 -26.15338 -25.84271 -24.42813 -23.00035 -22.79220 -21.79837 -21.22589 -20.37624 -19.18281 -19.14707 -17.48908 -17.17176 -16.67860 -16.65629 -16.10052 -15.53010 -14.97479 -14.69263 -14.55635 -14.19731 -14.06956 -13.92324 -13.78008 -13.55812 -13.52474 -13.42812 -13.18452 -12.93485 -12.76034 -12.71930 -12.59168 -12.54211 -12.27991 -11.75315 -11.46580 -11.24423 -11.06001 -11.03117 -10.82583 -10.75036 -10.44567 -10.35393 -10.26644 -10.05682 -9.76788 -9.61612 -9.42155 -9.16857 -8.86263 -8.52928 -7.94689 -6.67243 -5.79536 -3.22825 0.98535 2.02456 2.25188 2.77615 2.93496 3.36498 3.43566 3.44940 3.99680 4.14705 4.16567 4.48114 4.49269 4.53066 4.71204 4.86348 4.87419 4.92794 4.99767 5.15965 5.22109 5.24971 5.28705 5.32446 5.35073 5.38455 5.42651 5.50140 5.64702 5.65962 5.75298 5.78940 5.86739 5.87098 5.93777 6.08837 6.12173 6.20240 6.23136 6.29874 6.44403 6.49449 6.65431 6.89154 7.14737 7.21475 7.51101 7.59980 7.66894 7.71206 7.79349 7.85628 8.42700 9.19868 9.82610 10.41282 11.29153 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002074 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.959977 B =13494.666039 C =14345.636261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.019 3.981 3 C -0.196 4.196 4 C -0.030 4.030 5 C 0.605 3.395 6 O -0.541 6.541 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.125 4.125 10 C 0.069 3.931 11 H 0.052 0.948 12 N -0.520 5.520 13 C 0.032 3.968 14 C 0.179 3.821 15 N -0.595 5.595 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.045 3.955 26 C 0.119 3.881 27 N -0.258 5.258 28 C 0.088 3.912 29 N -0.278 5.278 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.171 0.829 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.113 -16.917 2.320 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.137 4.137 3 C -0.225 4.225 4 C -0.158 4.158 5 C 0.392 3.608 6 O -0.419 6.419 7 N -0.334 5.334 8 C -0.028 4.028 9 C -0.163 4.163 10 C -0.041 4.041 11 H 0.070 0.930 12 N -0.246 5.246 13 C -0.097 4.097 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.022 3.978 25 C -0.084 4.084 26 C -0.003 4.003 27 N -0.045 5.045 28 C -0.052 4.052 29 N -0.112 5.112 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.278 -18.525 1.726 26.081 hybrid contribution 0.855 1.304 1.316 2.040 sum -17.423 -17.221 3.041 24.685 Atomic orbital electron populations 1.20086 0.86324 1.03248 1.02799 1.22059 0.97173 0.88858 1.05580 1.22672 0.90281 1.00921 1.08613 1.21286 0.95604 0.85266 1.13687 1.16449 0.86650 0.80606 0.77063 1.90806 1.29867 1.69869 1.51369 1.47993 1.09893 1.03979 1.71497 1.22488 0.87400 0.91197 1.01758 1.22758 0.95624 0.94087 1.03844 1.22735 0.93554 0.91073 0.96729 0.93024 1.62019 1.03564 1.00426 1.58555 1.22968 0.86920 1.01015 0.98775 1.20854 0.96594 0.81483 0.95764 1.44111 1.00950 1.11077 1.75746 1.19193 0.92638 1.06014 1.20363 0.91685 1.25072 0.98935 0.99237 0.96439 1.70013 1.15526 1.44814 1.24394 0.86259 0.81011 0.80197 0.79212 1.21528 1.21735 1.20418 1.20977 0.85726 0.93961 0.97115 1.22638 0.98085 0.90644 0.97057 1.22311 0.87997 0.87699 1.02328 1.45539 1.05141 1.04273 1.49559 1.22320 0.85488 0.92361 1.05026 1.73131 0.89440 1.27963 1.20703 0.90805 0.90442 0.91027 0.81202 0.90302 0.90768 0.89892 0.88983 0.95527 0.91938 0.95449 0.89380 0.93594 0.95612 0.92588 0.91757 0.95375 0.90151 0.89591 0.89603 0.88751 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.45 36.00 0.38 -0.03 16 2 C 0.02 0.19 7.22 -82.47 -0.60 -0.40 16 3 C -0.20 -1.91 9.41 -38.98 -0.37 -2.28 16 4 C -0.03 -0.36 6.92 -82.06 -0.57 -0.93 16 5 C 0.60 8.04 7.83 -12.64 -0.10 7.95 16 6 O -0.54 -8.52 15.06 5.26 0.08 -8.45 16 7 N -0.60 -7.11 3.33 -171.88 -0.57 -7.68 16 8 C 0.09 0.81 5.02 -3.06 -0.02 0.80 16 9 C -0.13 -1.19 5.32 -24.89 -0.13 -1.32 16 10 C 0.07 0.88 2.72 -65.57 -0.18 0.70 16 11 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 12 N -0.52 -8.42 4.53 -223.79 -1.01 -9.43 16 13 C 0.03 0.60 5.48 -3.70 -0.02 0.58 16 14 C 0.18 4.22 5.40 -3.61 -0.02 4.20 16 15 N -0.60 -14.71 3.03 -172.02 -0.52 -15.23 16 16 C -0.25 -6.84 9.63 -15.06 -0.14 -6.98 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.05 4.97 -17.43 -0.09 -0.04 16 19 N -0.90 -26.03 11.15 55.49 0.62 -25.41 16 20 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.02 6.69 -3.60 -0.02 2.99 16 25 C 0.05 0.74 5.48 -3.70 -0.02 0.72 16 26 C 0.12 1.56 5.36 -2.53 -0.01 1.54 16 27 N -0.26 -3.00 3.75 -63.88 -0.24 -3.24 16 28 C 0.09 0.78 10.64 59.85 0.64 1.41 16 29 N -0.28 -3.26 11.90 33.64 0.40 -2.85 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.17 1.20 4.64 -52.49 -0.24 0.96 16 34 H 0.08 0.57 6.50 -51.93 -0.34 0.23 16 35 H 0.07 0.55 7.38 -51.93 -0.38 0.16 16 36 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.32 6.17 -51.93 -0.32 2.00 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 45 H 0.06 0.86 6.85 -51.93 -0.36 0.50 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 48 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.11 1.01 6.66 -51.93 -0.35 0.67 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -32.88 394.66 -9.79 -42.67 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.19 Total: -1.75 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.27 Total: 8.91 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -1.33 Total: -63.85 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.88 -9.79 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.508 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds