Wall clock time and date at job start Wed Apr 1 2020 04:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35364 * 126.38525 * 2 1 4 4 C 1.41494 * 105.50309 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51757 * 179.97438 * 4 3 2 6 6 O 1.21565 * 119.99912 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99821 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.65061 * 0.04131 * 7 5 4 9 9 C 1.54320 * 107.27205 * 178.90919 * 8 7 5 10 10 C 1.55161 * 102.94277 * 337.80356 * 9 8 7 11 11 H 1.08999 * 111.03666 * 277.42064 * 10 9 8 12 12 N 1.46901 * 111.00162 * 153.57644 * 10 9 8 13 13 C 1.46906 * 110.99319 * 186.41316 * 12 10 9 14 14 C 1.53247 * 109.33510 * 172.74898 * 13 12 10 15 15 N 1.47076 * 108.52044 * 53.83045 * 14 13 12 16 16 C 1.36938 * 120.88133 * 128.79288 * 15 14 13 17 17 H 1.08002 * 119.99773 * 209.22304 * 16 15 14 18 18 C 1.38811 * 119.99881 * 29.22940 * 16 15 14 19 19 N 1.31620 * 119.99971 * 13.11631 * 18 16 15 20 20 Si 1.86801 * 119.99999 * 193.11309 * 18 16 15 21 21 H 1.48503 * 109.47034 * 59.99980 * 20 18 16 22 22 H 1.48497 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47028 * 300.00167 * 20 18 16 24 24 C 1.47080 * 118.23679 * 308.81325 * 15 14 13 25 25 C 1.46893 * 110.99893 * 62.11687 * 12 10 9 26 26 C 1.47424 * 125.64507 * 180.02562 * 7 5 4 27 27 N 1.31813 * 106.96689 * 0.24645 * 4 3 2 28 28 N 1.28470 * 110.06750 * 359.59370 * 27 4 3 29 29 C 1.46496 * 124.88101 * 180.13636 * 28 27 4 30 30 H 1.09002 * 109.47125 * 90.02007 * 1 2 3 31 31 H 1.08998 * 109.46706 * 210.02062 * 1 2 3 32 32 H 1.08997 * 109.46926 * 330.01961 * 1 2 3 33 33 H 1.08004 * 127.24590 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.88112 * 298.32557 * 8 7 5 35 35 H 1.08996 * 109.88447 * 59.33341 * 8 7 5 36 36 H 1.09006 * 110.71926 * 219.44516 * 9 8 7 37 37 H 1.08995 * 110.72141 * 96.17096 * 9 8 7 38 38 H 1.09005 * 109.49285 * 292.70315 * 13 12 10 39 39 H 1.08994 * 109.49348 * 52.79238 * 13 12 10 40 40 H 1.09002 * 109.62621 * 294.12052 * 14 13 12 41 41 H 1.08995 * 109.62763 * 173.53815 * 14 13 12 42 42 H 0.97001 * 119.99670 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.62837 * 291.47452 * 24 15 14 44 44 H 1.09000 * 109.62860 * 170.89519 * 24 15 14 45 45 H 1.09001 * 109.49133 * 307.20450 * 25 12 10 46 46 H 1.08996 * 109.50203 * 67.26066 * 25 12 10 47 47 H 1.08997 * 110.36761 * 85.32482 * 26 7 5 48 48 H 1.09004 * 110.36633 * 322.99860 * 26 7 5 49 49 H 1.09005 * 109.47234 * 270.32291 * 29 28 27 50 50 H 1.09000 * 109.47447 * 30.32173 * 29 28 27 51 51 H 1.09003 * 109.47435 * 150.32459 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8213 2.5956 -0.0001 7 7 6.0730 0.7610 0.0005 8 6 6.2840 -0.6940 0.0000 9 6 7.8078 -0.9361 -0.0277 10 6 8.3599 0.3908 -0.6125 11 1 8.2997 0.3938 -1.7008 12 7 9.7378 0.6311 -0.1634 13 6 10.2071 1.9560 -0.5906 14 6 11.5713 2.2409 0.0468 15 7 12.4777 1.1273 -0.2722 16 6 13.7153 1.3604 -0.8099 17 1 14.1704 0.6246 -1.4563 18 6 14.3849 2.5422 -0.5239 19 7 13.9634 3.3178 0.4523 20 14 15.8844 3.0317 -1.5246 21 1 15.5021 3.1725 -2.9527 22 1 16.4124 4.3263 -1.0242 23 1 16.9304 1.9858 -1.3930 24 6 12.0193 -0.2432 0.0014 25 6 10.6375 -0.4303 -0.6342 26 6 7.3872 1.4292 0.0007 27 7 3.5421 -0.7297 -0.0045 28 7 2.3081 -1.0871 0.0004 29 6 1.8377 -2.4745 -0.0002 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 2.0057 2.1260 0.0004 34 1 5.8556 -1.1310 0.9021 35 1 5.8201 -1.1356 -0.8819 36 1 8.0532 -1.7757 -0.6781 37 1 8.1903 -1.1024 0.9794 38 1 10.3017 1.9757 -1.6764 39 1 9.4919 2.7149 -0.2735 40 1 11.4601 2.3243 1.1279 41 1 11.9765 3.1694 -0.3553 42 1 14.4311 4.1439 0.6518 43 1 11.9512 -0.3985 1.0781 44 1 12.7207 -0.9570 -0.4307 45 1 10.2345 -1.4020 -0.3487 46 1 10.7258 -0.3777 -1.7193 47 1 7.6874 1.6753 1.0192 48 1 7.3555 2.3287 -0.6142 49 1 1.7219 -2.8185 -1.0280 50 1 2.5635 -3.1044 0.5141 51 1 0.8777 -2.5329 0.5128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051992847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:47 Heat of formation + Delta-G solvation = 91.667246 kcal Electronic energy + Delta-G solvation = -30816.644551 eV Core-core repulsion = 26754.065512 eV Total energy + Delta-G solvation = -4062.579039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.97243 -39.95043 -38.31993 -36.67710 -34.20940 -33.82006 -33.01420 -31.54340 -30.66480 -29.67782 -28.79521 -27.85741 -27.21131 -25.85139 -24.09825 -22.90184 -22.69803 -21.76367 -20.93805 -20.29293 -19.09890 -18.99488 -17.19781 -17.00232 -16.81336 -16.72660 -16.08957 -15.38066 -14.89058 -14.61654 -14.43565 -14.31659 -13.99872 -13.82530 -13.71092 -13.50514 -13.43761 -13.31717 -13.14174 -13.02019 -13.00532 -12.74024 -12.53625 -12.46573 -12.25838 -11.68573 -11.39748 -11.16254 -10.98270 -10.91646 -10.78977 -10.69255 -10.41743 -10.25846 -10.13712 -9.99049 -9.70087 -9.54944 -9.40080 -9.21649 -8.61218 -8.47071 -7.83915 -6.58659 -5.73774 -3.18760 1.37366 1.82358 2.09621 2.90919 3.33507 3.40862 3.46478 3.47300 3.95635 4.21965 4.31770 4.37156 4.51116 4.53183 4.59405 4.71152 4.75073 4.84240 5.01208 5.11863 5.15413 5.29876 5.36097 5.37827 5.40359 5.45097 5.53858 5.61419 5.69145 5.82682 5.88963 5.92852 5.98168 6.04676 6.07087 6.16627 6.22218 6.26966 6.37053 6.39058 6.45906 6.57500 6.74270 6.96574 7.28779 7.44056 7.60557 7.63173 7.69574 7.74846 7.85072 8.14085 8.49543 9.25990 9.88236 10.47971 11.34776 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.001968 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.933368 B =14223.678061 C =14905.800301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.178 4.178 4 C -0.008 4.008 5 C 0.616 3.384 6 O -0.534 6.534 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.125 4.125 10 C 0.069 3.931 11 H 0.050 0.950 12 N -0.520 5.520 13 C 0.032 3.968 14 C 0.180 3.820 15 N -0.595 5.595 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.149 3.851 25 C 0.045 3.955 26 C 0.117 3.883 27 N -0.257 5.257 28 N -0.285 5.285 29 C 0.085 3.915 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.708 -13.012 -0.931 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.167 4.167 5 C 0.403 3.597 6 O -0.409 6.409 7 N -0.339 5.339 8 C -0.008 4.008 9 C -0.163 4.163 10 C -0.041 4.041 11 H 0.068 0.932 12 N -0.246 5.246 13 C -0.097 4.097 14 C 0.054 3.946 15 N -0.319 5.319 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.022 3.978 25 C -0.084 4.084 26 C -0.005 4.005 27 N -0.093 5.093 28 N -0.074 5.074 29 C -0.055 4.055 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.088 -13.263 -0.361 31.064 hybrid contribution 0.266 0.841 -1.403 1.657 sum -27.822 -12.422 -1.764 30.520 Atomic orbital electron populations 1.20345 0.86636 1.03835 1.03266 1.21401 0.95430 0.86716 1.08191 1.21514 0.90431 0.99645 1.09006 1.21801 0.94896 0.89704 1.10339 1.16474 0.80578 0.85932 0.76759 1.90807 1.86227 1.12702 1.51160 1.48218 1.05323 1.08258 1.72063 1.22027 0.96190 0.80278 1.02299 1.22747 0.93106 0.97402 1.03042 1.22747 0.90048 0.94445 0.96842 0.93202 1.62019 0.99369 1.03615 1.59572 1.22974 1.00110 0.88773 0.97849 1.20856 0.84390 0.92567 0.96812 1.44079 1.14560 0.99728 1.73490 1.19125 0.93620 1.03808 1.21710 0.91876 1.25111 0.97946 0.99554 0.96986 1.69982 1.41713 1.14204 1.28927 0.86351 0.82809 0.77633 0.79804 1.21110 1.21607 1.20912 1.20978 0.91273 0.88549 0.96950 1.22626 0.95170 0.93249 0.97357 1.22269 0.80164 0.95662 1.02399 1.73668 1.01339 1.14895 1.19360 1.45381 1.02954 1.07503 1.51532 1.22154 1.01584 0.77313 1.04449 0.90341 0.91220 0.89530 0.82072 0.91046 0.91207 0.90339 0.89313 0.95608 0.91878 0.95461 0.89390 0.93538 0.95652 0.92673 0.91851 0.95470 0.89833 0.90383 0.89707 0.88405 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.10 36.01 0.36 0.05 16 2 C 0.01 0.05 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -1.98 10.73 -39.37 -0.42 -2.40 16 4 C -0.01 -0.10 6.98 -82.76 -0.58 -0.68 16 5 C 0.62 9.66 7.86 -12.39 -0.10 9.57 16 6 O -0.53 -9.92 17.18 5.31 0.09 -9.83 16 7 N -0.61 -8.71 3.33 -171.66 -0.57 -9.28 16 8 C 0.12 1.35 5.55 -3.07 -0.02 1.33 16 9 C -0.12 -1.48 5.34 -24.90 -0.13 -1.61 16 10 C 0.07 1.01 2.72 -65.55 -0.18 0.83 16 11 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 12 N -0.52 -9.18 4.53 -223.76 -1.01 -10.19 16 13 C 0.03 0.64 5.48 -3.69 -0.02 0.62 16 14 C 0.18 4.40 5.38 -3.60 -0.02 4.39 16 15 N -0.60 -15.21 3.03 -172.01 -0.52 -15.73 16 16 C -0.25 -7.03 9.62 -15.06 -0.14 -7.17 16 17 H 0.06 1.72 7.86 -52.49 -0.41 1.30 16 18 C 0.00 0.07 5.01 -17.43 -0.09 -0.01 16 19 N -0.90 -26.57 11.11 55.49 0.62 -25.96 16 20 Si 0.90 21.96 29.57 -169.99 -5.03 16.93 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.15 3.17 6.69 -3.60 -0.02 3.15 16 25 C 0.05 0.80 5.48 -3.70 -0.02 0.78 16 26 C 0.12 1.78 5.31 -2.52 -0.01 1.77 16 27 N -0.26 -2.92 9.50 33.42 0.32 -2.60 16 28 N -0.28 -2.38 3.70 -63.85 -0.24 -2.62 16 29 C 0.09 0.29 11.11 59.84 0.66 0.95 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.14 7.00 -51.93 -0.36 -0.22 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.07 0.80 7.78 -51.93 -0.40 0.40 16 35 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 36 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.16 6.79 -51.93 -0.35 0.81 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.39 6.20 -51.93 -0.32 2.07 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 45 H 0.06 0.94 6.87 -51.93 -0.36 0.58 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.08 1.25 7.74 -51.93 -0.40 0.85 16 49 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.09 0.08 6.95 -51.93 -0.36 -0.28 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -34.72 400.18 -10.01 -44.73 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.40 Total: -2.52 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.30 Total: 11.04 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.41 Total: -66.37 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.72 -10.01 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.396 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds