Wall clock time and date at job start Wed Apr 1 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35364 * 126.38525 * 2 1 4 4 C 1.41494 * 105.50309 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51757 * 179.97438 * 4 3 2 6 6 O 1.21565 * 119.99912 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99821 * 180.02562 * 5 4 3 8 8 C 1.47021 * 125.65061 * 0.04131 * 7 5 4 9 9 C 1.54320 * 107.27205 * 178.90919 * 8 7 5 10 10 C 1.55161 * 102.94277 * 337.80356 * 9 8 7 11 11 H 1.08999 * 111.03666 * 277.42064 * 10 9 8 12 12 N 1.46901 * 111.00162 * 153.57644 * 10 9 8 13 13 C 1.46906 * 110.99319 * 186.41316 * 12 10 9 14 14 C 1.53247 * 109.33510 * 172.74898 * 13 12 10 15 15 N 1.47076 * 108.52044 * 53.83045 * 14 13 12 16 16 C 1.36938 * 120.88133 * 128.79288 * 15 14 13 17 17 H 1.08002 * 119.99773 * 209.22304 * 16 15 14 18 18 C 1.38811 * 119.99881 * 29.22940 * 16 15 14 19 19 N 1.31620 * 119.99971 * 13.11631 * 18 16 15 20 20 Si 1.86801 * 119.99999 * 193.11309 * 18 16 15 21 21 H 1.48503 * 109.47034 * 59.99980 * 20 18 16 22 22 H 1.48497 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47028 * 300.00167 * 20 18 16 24 24 C 1.47080 * 118.23679 * 308.81325 * 15 14 13 25 25 C 1.46893 * 110.99893 * 62.11687 * 12 10 9 26 26 C 1.47424 * 125.64507 * 180.02562 * 7 5 4 27 27 N 1.31813 * 106.96689 * 0.24645 * 4 3 2 28 28 N 1.28470 * 110.06750 * 359.59370 * 27 4 3 29 29 C 1.46496 * 124.88101 * 180.13636 * 28 27 4 30 30 H 1.09002 * 109.47125 * 90.02007 * 1 2 3 31 31 H 1.08998 * 109.46706 * 210.02062 * 1 2 3 32 32 H 1.08997 * 109.46926 * 330.01961 * 1 2 3 33 33 H 1.08004 * 127.24590 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.88112 * 298.32557 * 8 7 5 35 35 H 1.08996 * 109.88447 * 59.33341 * 8 7 5 36 36 H 1.09006 * 110.71926 * 219.44516 * 9 8 7 37 37 H 1.08995 * 110.72141 * 96.17096 * 9 8 7 38 38 H 1.09005 * 109.49285 * 292.70315 * 13 12 10 39 39 H 1.08994 * 109.49348 * 52.79238 * 13 12 10 40 40 H 1.09002 * 109.62621 * 294.12052 * 14 13 12 41 41 H 1.08995 * 109.62763 * 173.53815 * 14 13 12 42 42 H 0.97001 * 119.99670 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.62837 * 291.47452 * 24 15 14 44 44 H 1.09000 * 109.62860 * 170.89519 * 24 15 14 45 45 H 1.09001 * 109.49133 * 307.20450 * 25 12 10 46 46 H 1.08996 * 109.50203 * 67.26066 * 25 12 10 47 47 H 1.08997 * 110.36761 * 85.32482 * 26 7 5 48 48 H 1.09004 * 110.36633 * 322.99860 * 26 7 5 49 49 H 1.09005 * 109.47234 * 270.32291 * 29 28 27 50 50 H 1.09000 * 109.47447 * 30.32173 * 29 28 27 51 51 H 1.09003 * 109.47435 * 150.32459 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8213 2.5956 -0.0001 7 7 6.0730 0.7610 0.0005 8 6 6.2840 -0.6940 0.0000 9 6 7.8078 -0.9361 -0.0277 10 6 8.3599 0.3908 -0.6125 11 1 8.2997 0.3938 -1.7008 12 7 9.7378 0.6311 -0.1634 13 6 10.2071 1.9560 -0.5906 14 6 11.5713 2.2409 0.0468 15 7 12.4777 1.1273 -0.2722 16 6 13.7153 1.3604 -0.8099 17 1 14.1704 0.6246 -1.4563 18 6 14.3849 2.5422 -0.5239 19 7 13.9634 3.3178 0.4523 20 14 15.8844 3.0317 -1.5246 21 1 15.5021 3.1725 -2.9527 22 1 16.4124 4.3263 -1.0242 23 1 16.9304 1.9858 -1.3930 24 6 12.0193 -0.2432 0.0014 25 6 10.6375 -0.4303 -0.6342 26 6 7.3872 1.4292 0.0007 27 7 3.5421 -0.7297 -0.0045 28 7 2.3081 -1.0871 0.0004 29 6 1.8377 -2.4745 -0.0002 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 2.0057 2.1260 0.0004 34 1 5.8556 -1.1310 0.9021 35 1 5.8201 -1.1356 -0.8819 36 1 8.0532 -1.7757 -0.6781 37 1 8.1903 -1.1024 0.9794 38 1 10.3017 1.9757 -1.6764 39 1 9.4919 2.7149 -0.2735 40 1 11.4601 2.3243 1.1279 41 1 11.9765 3.1694 -0.3553 42 1 14.4311 4.1439 0.6518 43 1 11.9512 -0.3985 1.0781 44 1 12.7207 -0.9570 -0.4307 45 1 10.2345 -1.4020 -0.3487 46 1 10.7258 -0.3777 -1.7193 47 1 7.6874 1.6753 1.0192 48 1 7.3555 2.3287 -0.6142 49 1 1.7219 -2.8185 -1.0280 50 1 2.5635 -3.1044 0.5141 51 1 0.8777 -2.5329 0.5128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051992847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:46 Heat of formation + Delta-G solvation = 67.696021 kcal Electronic energy + Delta-G solvation = -30817.684021 eV Core-core repulsion = 26754.065512 eV Total energy + Delta-G solvation = -4063.618509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.69439 -41.14235 -39.75161 -38.11891 -35.84783 -34.55833 -33.60581 -33.29957 -32.10393 -31.28718 -29.98443 -28.57060 -28.06282 -27.27379 -25.36060 -24.53960 -24.13624 -22.85883 -21.69365 -21.60749 -20.81087 -19.99524 -18.81308 -17.91517 -17.78317 -17.62065 -17.27136 -16.77038 -16.45417 -15.98789 -15.70165 -15.47715 -15.28891 -15.17737 -15.02536 -14.89540 -14.57472 -14.16104 -14.03147 -13.92773 -13.82842 -13.66659 -13.42884 -13.31383 -13.17200 -13.10777 -12.95527 -12.66976 -12.58821 -12.51087 -12.25900 -12.02792 -11.91160 -11.86242 -11.71186 -11.45386 -11.38211 -11.31657 -10.58342 -10.17137 -9.91144 -9.72926 -9.32738 -8.64024 -7.86372 -5.34944 0.46459 1.09040 1.46276 1.48883 1.49787 1.55637 1.88618 2.26651 2.50792 2.93676 3.17497 3.29744 3.45243 3.65514 3.70585 3.74383 3.91092 4.05152 4.19868 4.24572 4.30113 4.34832 4.38935 4.39305 4.49951 4.56623 4.59085 4.61360 4.64556 4.69273 4.70764 4.80922 4.81453 4.86757 4.90834 4.94814 5.02836 5.07726 5.09781 5.13768 5.21956 5.24151 5.36634 5.39181 5.61748 5.68934 5.88981 6.12849 6.22348 6.35590 6.39623 6.77916 7.04177 7.14398 7.84544 8.39787 9.20082 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.001968 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.933368 B =14223.678061 C =14905.800301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 C -0.209 4.209 4 C -0.042 4.042 5 C 0.609 3.391 6 O -0.579 6.579 7 N -0.606 5.606 8 C 0.122 3.878 9 C -0.113 4.113 10 C 0.074 3.926 11 H 0.053 0.947 12 N -0.526 5.526 13 C 0.049 3.951 14 C 0.189 3.811 15 N -0.614 5.614 16 C -0.264 4.264 17 H 0.068 0.932 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.144 3.856 25 C 0.057 3.943 26 C 0.119 3.881 27 N -0.263 5.263 28 N -0.277 5.277 29 C 0.072 3.928 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.072 0.928 40 H -0.001 1.001 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.018 0.982 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.121 -16.516 -1.815 35.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.237 4.237 4 C -0.199 4.199 5 C 0.398 3.602 6 O -0.457 6.457 7 N -0.339 5.339 8 C 0.000 4.000 9 C -0.151 4.151 10 C -0.035 4.035 11 H 0.070 0.930 12 N -0.251 5.251 13 C -0.080 4.080 14 C 0.063 3.937 15 N -0.339 5.339 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.799 3.201 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.199 1.199 24 C 0.018 3.982 25 C -0.072 4.072 26 C -0.004 4.004 27 N -0.100 5.100 28 N -0.066 5.066 29 C -0.066 4.066 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.174 0.826 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.091 0.909 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -30.514 -16.845 -1.252 34.877 hybrid contribution 0.900 1.811 -1.086 2.295 sum -29.614 -15.034 -2.338 33.293 Atomic orbital electron populations 1.20535 0.83208 1.05500 1.04665 1.21938 0.97197 0.85614 1.05392 1.21688 0.90390 1.00679 1.10950 1.21541 0.94384 0.90672 1.13350 1.16932 0.81611 0.85771 0.75921 1.90759 1.87005 1.14639 1.53328 1.48301 1.04633 1.09435 1.71493 1.22111 0.96227 0.78510 1.03178 1.22749 0.92588 0.96317 1.03413 1.22709 0.87791 0.96029 0.96972 0.92952 1.61928 1.00894 1.02394 1.59879 1.22599 0.97738 0.90871 0.96782 1.20560 0.86591 0.91469 0.95101 1.44360 1.14322 1.01531 1.73641 1.19492 0.94389 1.03947 1.21551 0.91407 1.25909 1.01011 0.99749 0.98134 1.70161 1.43092 1.14421 1.30636 0.85297 0.79531 0.77017 0.78301 1.20499 1.22098 1.19867 1.21159 0.93662 0.86433 0.96911 1.22494 0.93132 0.94836 0.96694 1.22123 0.81214 0.95659 1.01389 1.73566 1.03145 1.13696 1.19612 1.45913 1.02106 1.09353 1.49240 1.22654 1.03153 0.74605 1.06217 0.88897 0.88457 0.88999 0.82552 0.90226 0.90188 0.87571 0.89250 0.96258 0.90926 0.98297 0.92757 0.94114 0.96400 0.91861 0.87815 0.95802 0.91071 0.92034 0.87973 0.87794 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.10 71.24 0.72 0.39 16 2 C 0.02 0.33 6.92 41.40 0.29 0.62 16 3 C -0.21 -4.65 10.73 22.41 0.24 -4.41 16 4 C -0.04 -1.11 6.98 42.46 0.30 -0.82 16 5 C 0.61 19.84 7.86 86.75 0.68 20.53 16 6 O -0.58 -22.94 17.18 -3.92 -0.07 -23.01 16 7 N -0.61 -17.50 3.33 -815.29 -2.71 -20.21 16 8 C 0.12 2.62 5.55 86.73 0.48 3.10 16 9 C -0.11 -2.33 5.34 31.78 0.17 -2.16 16 10 C 0.07 2.08 2.72 46.32 0.13 2.20 16 11 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 12 N -0.53 -18.10 4.53 -861.83 -3.90 -22.00 16 13 C 0.05 2.02 5.48 86.38 0.47 2.49 16 14 C 0.19 9.66 5.38 86.35 0.46 10.13 16 15 N -0.61 -31.96 3.03 -698.12 -2.11 -34.08 16 16 C -0.26 -14.83 9.62 84.03 0.81 -14.02 16 17 H 0.07 3.67 7.86 -2.91 -0.02 3.65 16 18 C -0.05 -3.03 5.01 84.86 0.43 -2.60 16 19 N -0.94 -57.14 11.11 21.65 0.24 -56.90 16 20 Si 0.97 45.87 29.57 68.60 2.03 47.90 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.14 6.02 6.69 86.35 0.58 6.59 16 25 C 0.06 1.90 5.48 86.38 0.47 2.37 16 26 C 0.12 3.68 5.31 86.86 0.46 4.14 16 27 N -0.26 -5.56 9.50 -48.17 -0.46 -6.02 16 28 N -0.28 -3.87 3.70 -355.92 -1.32 -5.19 16 29 C 0.07 0.19 11.11 127.77 1.42 1.61 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.10 -0.10 7.00 -2.39 -0.02 -0.12 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.08 1.62 7.78 -2.38 -0.02 1.60 16 35 H 0.08 1.60 7.64 -2.39 -0.02 1.58 16 36 H 0.11 1.69 7.94 -2.38 -0.02 1.67 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 2.79 6.79 -2.39 -0.02 2.77 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 3.12 6.20 -2.39 -0.01 3.10 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 45 H 0.10 2.64 6.87 -2.39 -0.02 2.63 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.06 2.08 7.74 -2.38 -0.02 2.06 16 49 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 50 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.13 -0.44 6.95 -2.39 -0.02 -0.45 16 Total: -1.00 -80.11 400.18 0.72 -79.39 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.92 Total: 9.95 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 8.10 Total: 30.15 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -10.26 Total: -144.39 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -80.11 0.72 -79.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.088 kcal (2) G-P(sol) polarization free energy of solvation -80.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds