Wall clock time and date at job start Wed Apr 1 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35359 * 126.39027 * 2 1 4 4 C 1.41508 * 105.50681 * 180.13973 * 3 2 1 5 5 C 1.47701 * 126.52050 * 179.84263 * 4 3 2 6 6 O 1.21568 * 120.00097 * 359.71418 * 5 4 3 7 7 N 1.34778 * 120.00130 * 179.71398 * 5 4 3 8 8 C 1.47030 * 125.64670 * 0.02562 * 7 5 4 9 9 C 1.54317 * 107.26852 * 181.03740 * 8 7 5 10 10 C 1.55442 * 102.97386 * 22.19415 * 9 8 7 11 11 H 1.09002 * 111.01375 * 82.51901 * 10 9 8 12 12 N 1.46898 * 111.12052 * 206.46364 * 10 9 8 13 13 C 1.46904 * 111.00088 * 297.85799 * 12 10 9 14 14 C 1.53227 * 109.34075 * 172.74596 * 13 12 10 15 15 N 1.47081 * 108.52433 * 53.82695 * 14 13 12 16 16 C 1.36937 * 120.87951 * 128.83544 * 15 14 13 17 17 H 1.08003 * 119.99970 * 206.62982 * 16 15 14 18 18 C 1.38816 * 120.00315 * 26.62958 * 16 15 14 19 19 N 1.31611 * 119.99853 * 17.03835 * 18 16 15 20 20 Si 1.86795 * 119.99932 * 197.03955 * 18 16 15 21 21 H 1.48508 * 109.47344 * 89.99830 * 20 18 16 22 22 H 1.48500 * 109.47292 * 209.99508 * 20 18 16 23 23 H 1.48495 * 109.47351 * 329.99783 * 20 18 16 24 24 C 1.47074 * 118.23756 * 308.81595 * 15 14 13 25 25 C 1.46903 * 111.00154 * 173.55422 * 12 10 9 26 26 C 1.47423 * 125.65044 * 180.02562 * 7 5 4 27 27 N 1.31816 * 106.95823 * 359.58036 * 4 3 2 28 28 N 1.28465 * 110.07336 * 0.26600 * 27 4 3 29 29 C 1.46497 * 124.88346 * 179.97438 * 28 27 4 30 30 H 1.08997 * 109.46989 * 270.33092 * 1 2 3 31 31 H 1.08999 * 109.46377 * 30.32460 * 1 2 3 32 32 H 1.08990 * 109.47125 * 150.32423 * 1 2 3 33 33 H 1.08003 * 127.24793 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.87791 * 300.45617 * 8 7 5 35 35 H 1.09002 * 109.88137 * 61.61756 * 8 7 5 36 36 H 1.08999 * 110.71777 * 140.55718 * 9 8 7 37 37 H 1.09000 * 110.72216 * 263.65129 * 9 8 7 38 38 H 1.09005 * 109.48986 * 292.70609 * 13 12 10 39 39 H 1.09001 * 109.49336 * 52.78451 * 13 12 10 40 40 H 1.08999 * 109.63082 * 294.11815 * 14 13 12 41 41 H 1.09004 * 109.79345 * 173.63046 * 14 13 12 42 42 H 0.96999 * 120.00079 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.63003 * 291.47152 * 24 15 14 44 44 H 1.09000 * 109.78821 * 170.98407 * 24 15 14 45 45 H 1.09001 * 109.49181 * 307.21605 * 25 12 10 46 46 H 1.08997 * 109.49229 * 67.29172 * 25 12 10 47 47 H 1.09000 * 110.36463 * 274.72749 * 26 7 5 48 48 H 1.08998 * 110.36582 * 36.94137 * 26 7 5 49 49 H 1.09007 * 109.47422 * 90.02019 * 29 28 27 50 50 H 1.08997 * 109.47503 * 210.01816 * 29 28 27 51 51 H 1.09004 * 109.47473 * 330.02090 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0896 0.0000 4 6 3.6322 0.5852 -0.0033 5 6 4.8766 1.3809 -0.0079 6 8 4.8215 2.5953 -0.0143 7 7 6.0731 0.7606 -0.0049 8 6 6.2840 -0.6945 0.0023 9 6 7.8078 -0.9364 0.0301 10 6 8.3621 0.3954 0.6092 11 1 8.3017 0.4035 1.6975 12 7 9.7394 0.6359 0.1586 13 6 10.6411 -0.4222 0.6335 14 6 12.0222 -0.2358 -0.0034 15 7 12.4786 1.1367 0.2639 16 6 13.7165 1.3739 0.7993 17 1 13.8921 2.2688 1.3777 18 6 14.7455 0.4641 0.5985 19 7 14.6514 -0.4353 -0.3577 20 14 16.2638 0.5166 1.6854 21 1 16.0562 -0.3570 2.8683 22 1 17.4400 0.0369 0.9162 23 1 16.5022 1.9113 2.1358 24 6 11.5704 2.2474 -0.0594 25 6 10.2070 1.9632 0.5798 26 6 7.3873 1.4287 -0.0082 27 7 3.5420 -0.7298 0.0042 28 7 2.3081 -1.0872 0.0062 29 6 1.8375 -2.4745 0.0135 30 1 -0.3633 0.0059 1.0276 31 1 -0.3632 0.8871 -0.5189 32 1 -0.3633 -0.8928 -0.5087 33 1 2.0059 2.1259 -0.0004 34 1 5.8230 -1.1314 0.8881 35 1 5.8549 -1.1356 -0.8974 36 1 8.0536 -1.7729 0.6842 37 1 8.1891 -1.1106 -0.9761 38 1 10.7300 -0.3645 1.7184 39 1 10.2393 -1.3957 0.3524 40 1 11.9538 -0.3958 -1.0794 41 1 12.7268 -0.9465 0.4284 42 1 15.3703 -1.0713 -0.4978 43 1 11.4586 2.3261 -1.1407 44 1 11.9728 3.1801 0.3360 45 1 9.4904 2.7197 0.2598 46 1 10.3019 1.9878 1.6654 47 1 7.6872 1.6706 -1.0278 48 1 7.3553 2.3316 0.6015 49 1 1.7205 -2.8131 1.0430 50 1 0.8782 -2.5356 -0.5002 51 1 2.5638 -3.1073 -0.4967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051992848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:52 Heat of formation + Delta-G solvation = 91.839922 kcal Electronic energy + Delta-G solvation = -30801.448018 eV Core-core repulsion = 26738.876467 eV Total energy + Delta-G solvation = -4062.571551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.97932 -39.95898 -38.32925 -36.68985 -34.22293 -33.82612 -33.02148 -31.62055 -30.28102 -30.12067 -28.69656 -27.85766 -27.21488 -25.87729 -24.12166 -22.85579 -22.74481 -21.77269 -20.94517 -20.30356 -19.10712 -19.01296 -17.19758 -17.02302 -16.83198 -16.72510 -16.08414 -15.40410 -14.93640 -14.64477 -14.44393 -14.23208 -14.01259 -13.85336 -13.72362 -13.51048 -13.42000 -13.28375 -13.18671 -13.06224 -13.00118 -12.75475 -12.54755 -12.47333 -12.28012 -11.76736 -11.30221 -11.14866 -11.04414 -10.93357 -10.76022 -10.72295 -10.39276 -10.25149 -10.17911 -10.00218 -9.69487 -9.55962 -9.40935 -9.22500 -8.62941 -8.48232 -7.84626 -6.63939 -5.75633 -3.16483 1.36472 1.81194 2.09190 2.89264 3.31743 3.39570 3.46488 3.47800 3.95187 4.21304 4.31308 4.36397 4.51131 4.52732 4.59420 4.70257 4.75426 4.84872 5.00701 5.12196 5.15721 5.29147 5.34844 5.36761 5.38444 5.43273 5.52655 5.60478 5.68748 5.83308 5.88680 5.91404 5.97598 6.04209 6.06307 6.18339 6.21069 6.26845 6.34476 6.37914 6.45376 6.56669 6.72857 6.97205 7.26401 7.42155 7.59616 7.62241 7.66530 7.72514 7.84374 8.11883 8.46222 9.24120 9.87482 10.46062 11.33186 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.001949 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.346868 B =14359.653190 C =15005.707714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.178 4.178 4 C -0.008 4.008 5 C 0.616 3.384 6 O -0.536 6.536 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.125 4.125 10 C 0.069 3.931 11 H 0.050 0.950 12 N -0.520 5.520 13 C 0.037 3.963 14 C 0.178 3.822 15 N -0.595 5.595 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.041 3.959 26 C 0.117 3.883 27 N -0.256 5.256 28 N -0.285 5.285 29 C 0.085 3.915 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.149 -5.720 0.804 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.168 4.168 5 C 0.403 3.597 6 O -0.411 6.411 7 N -0.338 5.338 8 C -0.008 4.008 9 C -0.163 4.163 10 C -0.041 4.041 11 H 0.068 0.932 12 N -0.246 5.246 13 C -0.092 4.092 14 C 0.052 3.948 15 N -0.319 5.319 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.023 3.977 25 C -0.088 4.088 26 C -0.005 4.005 27 N -0.092 5.092 28 N -0.073 5.073 29 C -0.055 4.055 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.479 -6.249 0.245 30.135 hybrid contribution 0.303 0.458 1.446 1.546 sum -29.177 -5.792 1.691 29.794 Atomic orbital electron populations 1.20343 0.86634 1.03830 1.03277 1.21403 0.95435 0.86717 1.08176 1.21508 0.90425 0.99630 1.09056 1.21790 0.94880 0.89716 1.10436 1.16468 0.80580 0.85916 0.76704 1.90799 1.86265 1.12713 1.51308 1.48218 1.05280 1.08320 1.71999 1.22044 0.96265 0.80173 1.02321 1.22787 0.92952 0.97374 1.03195 1.22782 0.89949 0.94501 0.96826 0.93186 1.62005 0.99550 1.03396 1.59624 1.22900 0.95982 0.92886 0.97433 1.20867 0.89248 0.87546 0.97154 1.44122 1.14146 1.00212 1.73391 1.19213 0.86502 1.07392 1.24851 0.91638 1.25017 0.97345 1.00013 0.97428 1.70026 1.33251 1.21488 1.30078 0.86284 0.82602 0.77750 0.80111 1.21561 1.21774 1.20487 1.20965 0.88140 0.91812 0.96818 1.22677 0.98692 0.89641 0.97810 1.22254 0.80324 0.95655 1.02275 1.73673 1.01351 1.14895 1.19267 1.45387 1.02943 1.07525 1.51476 1.22161 1.01594 0.77298 1.04476 0.90342 0.89537 0.91208 0.82086 0.91188 0.90973 0.90246 0.89253 0.95697 0.91892 0.95544 0.89319 0.93661 0.95595 0.92593 0.91781 0.95313 0.89934 0.90509 0.89672 0.88721 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.10 36.01 0.36 0.05 16 2 C 0.01 0.05 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -1.95 10.73 -39.36 -0.42 -2.37 16 4 C -0.01 -0.11 6.98 -82.76 -0.58 -0.69 16 5 C 0.62 9.49 7.86 -12.39 -0.10 9.39 16 6 O -0.54 -9.70 17.18 5.31 0.09 -9.61 16 7 N -0.60 -8.57 3.33 -171.70 -0.57 -9.14 16 8 C 0.12 1.36 5.54 -3.06 -0.02 1.35 16 9 C -0.12 -1.54 5.37 -24.74 -0.13 -1.67 16 10 C 0.07 1.01 2.72 -65.42 -0.18 0.83 16 11 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 12 N -0.52 -9.15 4.53 -223.61 -1.01 -10.16 16 13 C 0.04 0.71 5.48 -3.70 -0.02 0.69 16 14 C 0.18 4.27 5.42 -3.61 -0.02 4.26 16 15 N -0.60 -15.18 3.04 -172.02 -0.52 -15.70 16 16 C -0.25 -6.93 9.63 -15.06 -0.15 -7.08 16 17 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 18 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 19 N -0.90 -26.32 11.15 55.49 0.62 -25.70 16 20 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 25 C 0.04 0.75 5.48 -3.70 -0.02 0.73 16 26 C 0.12 1.71 5.31 -2.54 -0.01 1.70 16 27 N -0.26 -2.91 9.50 33.42 0.32 -2.59 16 28 N -0.28 -2.38 3.70 -63.85 -0.24 -2.61 16 29 C 0.09 0.29 11.11 59.85 0.66 0.96 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.14 7.00 -51.93 -0.36 -0.23 16 33 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 35 H 0.07 0.83 7.77 -51.93 -0.40 0.42 16 36 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 2.36 6.11 -51.93 -0.32 2.04 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 45 H 0.06 1.03 6.79 -51.93 -0.35 0.68 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.09 0.09 6.95 -51.93 -0.36 -0.27 16 51 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -34.48 400.22 -10.01 -44.49 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.40 Total: -2.59 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.29 Total: 10.76 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -1.41 Total: -65.90 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.48 -10.01 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.330 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds