Wall clock time and date at job start Wed Apr 1 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30448 * 125.98497 * 2 1 4 4 N 1.39940 * 108.89503 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.75462 * 179.97438 * 4 3 2 6 6 C 1.34264 * 108.48853 * 359.75007 * 4 3 2 7 7 C 1.38049 * 107.41691 * 0.39582 * 6 4 3 8 8 C 1.47425 * 126.40884 * 179.87354 * 7 6 4 9 9 O 1.21605 * 119.99365 * 179.68441 * 8 7 6 10 10 N 1.34776 * 120.00651 * 359.68364 * 8 7 6 11 11 C 1.47029 * 125.64388 * 359.95893 * 10 8 7 12 12 C 1.54317 * 107.26994 * 178.97383 * 11 10 8 13 13 C 1.55157 * 102.94419 * 337.81149 * 12 11 10 14 14 H 1.09002 * 111.03460 * 277.40867 * 13 12 11 15 15 N 1.46902 * 111.00870 * 153.57277 * 13 12 11 16 16 C 1.46906 * 110.99645 * 69.35635 * 15 13 12 17 17 C 1.53240 * 109.33848 * 187.25604 * 16 15 13 18 18 N 1.47080 * 108.51919 * 306.17044 * 17 16 15 19 19 C 1.36942 * 120.88187 * 231.18515 * 18 17 16 20 20 H 1.07998 * 119.99677 * 29.90218 * 19 18 17 21 21 C 1.38803 * 119.99903 * 210.18041 * 19 18 17 22 22 N 1.31615 * 120.00381 * 10.54940 * 21 19 18 23 23 Si 1.86803 * 119.99839 * 190.54986 * 21 19 18 24 24 H 1.48498 * 109.47098 * 59.99761 * 23 21 19 25 25 H 1.48501 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47173 * 299.99850 * 23 21 19 27 27 C 1.47077 * 118.23744 * 51.46043 * 18 17 16 28 28 C 1.46896 * 111.00376 * 193.65594 * 15 13 12 29 29 C 1.47420 * 125.65233 * 180.02562 * 10 8 7 30 30 H 1.09000 * 109.46948 * 270.04219 * 1 2 3 31 31 H 1.08997 * 109.46754 * 30.04675 * 1 2 3 32 32 H 1.09000 * 109.46927 * 150.04478 * 1 2 3 33 33 H 1.09001 * 109.47251 * 89.97212 * 5 4 3 34 34 H 1.08997 * 109.47657 * 209.97814 * 5 4 3 35 35 H 1.09007 * 109.47456 * 329.97694 * 5 4 3 36 36 H 1.07999 * 126.28869 * 180.24038 * 6 4 3 37 37 H 1.08992 * 109.88257 * 298.39843 * 11 10 8 38 38 H 1.09004 * 109.87736 * 59.56333 * 11 10 8 39 39 H 1.08996 * 110.72383 * 219.44455 * 12 11 10 40 40 H 1.08998 * 110.71934 * 96.17103 * 12 11 10 41 41 H 1.09003 * 109.49362 * 67.29956 * 16 15 13 42 42 H 1.08998 * 109.49431 * 307.21355 * 16 15 13 43 43 H 1.08997 * 109.62860 * 186.45952 * 17 16 15 44 44 H 1.08997 * 109.78704 * 65.97344 * 17 16 15 45 45 H 0.97003 * 119.99886 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.63234 * 68.25095 * 27 18 17 47 47 H 1.08999 * 109.62828 * 188.83200 * 27 18 17 48 48 H 1.08994 * 109.49380 * 292.70926 * 28 15 13 49 49 H 1.08999 * 109.48754 * 52.78918 * 28 15 13 50 50 H 1.08994 * 110.36831 * 85.25724 * 29 10 8 51 51 H 1.09004 * 110.36584 * 322.93015 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6443 0.0006 5 6 4.7787 1.5291 0.0003 6 6 3.6439 -0.6979 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8917 -2.5485 0.0013 9 8 0.7040 -2.8097 0.0014 10 7 2.8005 -3.5437 0.0018 11 6 4.2606 -3.3707 0.0009 12 6 4.8889 -4.7799 0.0283 13 6 3.7506 -5.6566 0.6142 14 1 3.7332 -5.5992 1.7025 15 7 3.8748 -7.0499 0.1652 16 6 5.0446 -7.6969 0.7743 17 6 5.2434 -9.0806 0.1465 18 7 3.9849 -9.8325 0.2649 19 6 3.9679 -11.0956 0.7935 20 1 4.6966 -11.3790 1.5385 21 6 3.0176 -12.0134 0.3677 22 7 2.2699 -11.7475 -0.6823 23 14 2.7999 -13.6261 1.2850 24 1 2.4232 -13.3471 2.6941 25 1 1.7300 -14.4248 0.6349 26 1 4.0738 -14.3886 1.2549 27 6 2.7461 -9.1941 -0.2052 28 6 2.6447 -7.8037 0.4418 29 6 2.4953 -4.9860 0.0020 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5146 32 1 -0.3633 -0.8904 -0.5131 33 1 5.0678 1.7497 1.0278 34 1 5.6061 1.0388 -0.5127 35 1 4.5310 2.4574 -0.5147 36 1 4.5298 -1.3157 0.0121 37 1 4.5708 -2.8439 -0.9014 38 1 4.5680 -2.8106 0.8840 39 1 5.7639 -4.7995 0.6779 40 1 5.1476 -5.1065 -0.9789 41 1 4.8837 -7.8039 1.8470 42 1 5.9306 -7.0869 0.5980 43 1 6.0375 -9.6106 0.6724 44 1 5.5086 -8.9739 -0.9053 45 1 1.6056 -12.3887 -0.9796 46 1 2.7741 -9.0952 -1.2904 47 1 1.8883 -9.7993 0.0881 48 1 2.5173 -7.9092 1.5191 49 1 1.7902 -7.2711 0.0245 50 1 2.3345 -5.3399 -1.0163 51 1 1.6189 -5.1882 0.6177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051996155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:57 Heat of formation + Delta-G solvation = 93.755107 kcal Electronic energy + Delta-G solvation = -30995.658562 eV Core-core repulsion = 26933.170060 eV Total energy + Delta-G solvation = -4062.488502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.77085 -39.90874 -38.28546 -36.76743 -34.32405 -34.16649 -31.93348 -30.93489 -30.69224 -29.70809 -29.64501 -28.37501 -26.48753 -25.70137 -24.13153 -22.89978 -22.57338 -21.52162 -20.90655 -20.20537 -19.36502 -19.13630 -17.23712 -17.06142 -16.55618 -16.31489 -15.99623 -15.41653 -14.93443 -14.63694 -14.50817 -14.24481 -14.04232 -13.96843 -13.66836 -13.54068 -13.43965 -13.36525 -13.12050 -12.88491 -12.73165 -12.56028 -12.42172 -12.39672 -12.18327 -11.66199 -11.43092 -11.17916 -11.12314 -11.01162 -10.87789 -10.73678 -10.46320 -10.28884 -10.02165 -9.89401 -9.74476 -9.66356 -9.58962 -9.00438 -8.66942 -8.50515 -7.89518 -6.61053 -5.76510 -3.23268 1.19902 1.92316 1.98343 2.88130 3.31670 3.38692 3.44325 3.44971 3.97233 4.16347 4.28449 4.37055 4.49934 4.54122 4.56386 4.63175 4.83451 4.88896 4.91566 4.96810 5.18019 5.20600 5.25313 5.34948 5.41967 5.47018 5.53641 5.68506 5.70861 5.79696 5.81434 5.84913 5.91420 5.94239 6.08232 6.14419 6.18467 6.27891 6.30497 6.34787 6.44927 6.53201 6.69830 6.92196 7.24930 7.27184 7.46168 7.56845 7.65500 7.72580 7.81804 8.18150 8.47279 9.23396 9.84808 10.44470 11.31706 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002085 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.761703 B =13425.716367 C =14312.213249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.305 5.305 4 N -0.364 5.364 5 C 0.097 3.903 6 C 0.087 3.913 7 C -0.283 4.283 8 C 0.608 3.392 9 O -0.539 6.539 10 N -0.615 5.615 11 C 0.096 3.904 12 C -0.123 4.123 13 C 0.068 3.932 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.046 3.954 17 C 0.149 3.851 18 N -0.596 5.596 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.180 3.820 28 C 0.030 3.970 29 C 0.118 3.882 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.025 0.975 45 H 0.255 0.745 46 H 0.027 0.973 47 H 0.090 0.910 48 H 0.026 0.974 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 26.095 1.375 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.127 5.127 4 N -0.142 5.142 5 C -0.044 4.044 6 C -0.064 4.064 7 C -0.298 4.298 8 C 0.398 3.602 9 O -0.417 6.417 10 N -0.350 5.350 11 C -0.028 4.028 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.083 4.083 17 C 0.022 3.978 18 N -0.319 5.319 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.735 3.265 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.054 3.946 28 C -0.098 4.098 29 C -0.004 4.004 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.210 0.790 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.108 0.892 48 H 0.044 0.956 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.294 27.272 0.787 28.000 hybrid contribution 0.104 -1.653 1.360 2.143 sum 6.398 25.619 2.147 26.493 Atomic orbital electron populations 1.20361 0.85533 1.04127 1.03621 1.22488 0.97326 0.88617 0.94973 1.77187 0.86010 1.22675 1.26796 1.48340 1.06156 1.04872 1.54837 1.21992 0.83771 0.94773 1.03896 1.23873 0.99676 0.85178 0.97659 1.20193 0.92149 0.94253 1.23157 1.16840 0.84640 0.82770 0.75905 1.90759 1.15762 1.83875 1.51330 1.48209 1.06208 1.06650 1.73891 1.22331 0.80879 0.98818 1.00741 1.22706 0.97736 0.92252 1.03409 1.22756 0.94195 0.90311 0.96886 0.93148 1.62047 1.04770 0.99391 1.58342 1.22624 0.91895 0.97409 0.96412 1.20972 0.90063 0.89378 0.97370 1.44097 1.00961 1.14257 1.72607 1.19126 1.15653 0.87672 1.15836 0.91875 1.25146 1.00479 0.97640 0.96285 1.69951 1.24953 1.35996 1.24047 0.86335 0.77463 0.83498 0.79205 1.21065 1.21582 1.20913 1.20975 0.90890 0.87241 0.95508 1.23075 0.90159 0.97931 0.98676 1.22255 0.97720 0.78192 1.02276 0.90172 0.91059 0.88468 0.90224 0.88998 0.88829 0.79039 0.91147 0.91469 0.90208 0.89030 0.95429 0.91983 0.92701 0.95682 0.93493 0.95467 0.89159 0.95573 0.91814 0.89999 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.92 36.01 0.36 -0.47 16 2 C 0.13 1.63 7.26 -82.02 -0.60 1.03 16 3 N -0.30 -3.55 12.50 33.90 0.42 -3.12 16 4 N -0.36 -3.13 3.98 -67.60 -0.27 -3.40 16 5 C 0.10 0.35 11.44 59.84 0.68 1.04 16 6 C 0.09 0.75 9.97 -16.56 -0.17 0.58 16 7 C -0.28 -3.38 6.10 -105.07 -0.64 -4.02 16 8 C 0.61 8.52 7.85 -12.52 -0.10 8.42 16 9 O -0.54 -9.23 15.17 5.27 0.08 -9.15 16 10 N -0.62 -7.55 3.33 -171.78 -0.57 -8.12 16 11 C 0.10 0.80 4.98 -3.06 -0.02 0.79 16 12 C -0.12 -1.18 5.69 -24.90 -0.14 -1.32 16 13 C 0.07 0.90 2.72 -65.55 -0.18 0.72 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 15 N -0.52 -8.61 4.53 -223.47 -1.01 -9.62 16 16 C 0.05 0.77 5.53 -3.70 -0.02 0.75 16 17 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 18 N -0.60 -14.89 3.02 -171.74 -0.52 -15.41 16 19 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 20 H 0.06 1.69 7.85 -52.49 -0.41 1.27 16 21 C 0.00 0.09 5.07 -17.44 -0.09 0.00 16 22 N -0.91 -26.20 11.00 55.49 0.61 -25.59 16 23 Si 0.91 21.66 29.57 -169.99 -5.03 16.64 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.18 4.30 5.39 -3.37 -0.02 4.28 16 28 C 0.03 0.58 5.43 -3.47 -0.02 0.57 16 29 C 0.12 1.62 4.98 -2.52 -0.01 1.61 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.15 6.55 -51.93 -0.34 0.81 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.19 0.99 4.42 -52.49 -0.23 0.75 16 37 H 0.07 0.47 7.03 -51.93 -0.36 0.10 16 38 H 0.07 0.44 6.83 -51.93 -0.35 0.08 16 39 H 0.08 0.64 7.98 -51.93 -0.41 0.22 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.85 7.19 -51.93 -0.37 0.48 16 43 H 0.05 1.08 7.95 -51.93 -0.41 0.67 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 1.13 6.53 -51.93 -0.34 0.79 16 50 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 51 H 0.08 1.18 7.78 -51.93 -0.40 0.78 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -34.52 395.28 -9.62 -44.14 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.17 Total: -2.28 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.12 Total: 9.96 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.34 Total: -65.27 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.52 -9.62 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051996155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.892 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds