Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30448 * 125.98497 * 2 1 4 4 N 1.39940 * 108.89503 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.75462 * 179.97438 * 4 3 2 6 6 C 1.34264 * 108.48853 * 359.75007 * 4 3 2 7 7 C 1.38049 * 107.41691 * 0.39582 * 6 4 3 8 8 C 1.47425 * 126.40884 * 179.87354 * 7 6 4 9 9 O 1.21605 * 119.99365 * 179.68441 * 8 7 6 10 10 N 1.34776 * 120.00651 * 359.68364 * 8 7 6 11 11 C 1.47029 * 125.64388 * 359.95893 * 10 8 7 12 12 C 1.54317 * 107.26994 * 178.97383 * 11 10 8 13 13 C 1.55157 * 102.94419 * 337.81149 * 12 11 10 14 14 H 1.09002 * 111.03460 * 277.40867 * 13 12 11 15 15 N 1.46902 * 111.00870 * 153.57277 * 13 12 11 16 16 C 1.46906 * 110.99645 * 69.35635 * 15 13 12 17 17 C 1.53240 * 109.33848 * 187.25604 * 16 15 13 18 18 N 1.47080 * 108.51919 * 306.17044 * 17 16 15 19 19 C 1.36942 * 120.88187 * 231.18515 * 18 17 16 20 20 H 1.07998 * 119.99677 * 29.90218 * 19 18 17 21 21 C 1.38803 * 119.99903 * 210.18041 * 19 18 17 22 22 N 1.31615 * 120.00381 * 10.54940 * 21 19 18 23 23 Si 1.86803 * 119.99839 * 190.54986 * 21 19 18 24 24 H 1.48498 * 109.47098 * 59.99761 * 23 21 19 25 25 H 1.48501 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47173 * 299.99850 * 23 21 19 27 27 C 1.47077 * 118.23744 * 51.46043 * 18 17 16 28 28 C 1.46896 * 111.00376 * 193.65594 * 15 13 12 29 29 C 1.47420 * 125.65233 * 180.02562 * 10 8 7 30 30 H 1.09000 * 109.46948 * 270.04219 * 1 2 3 31 31 H 1.08997 * 109.46754 * 30.04675 * 1 2 3 32 32 H 1.09000 * 109.46927 * 150.04478 * 1 2 3 33 33 H 1.09001 * 109.47251 * 89.97212 * 5 4 3 34 34 H 1.08997 * 109.47657 * 209.97814 * 5 4 3 35 35 H 1.09007 * 109.47456 * 329.97694 * 5 4 3 36 36 H 1.07999 * 126.28869 * 180.24038 * 6 4 3 37 37 H 1.08992 * 109.88257 * 298.39843 * 11 10 8 38 38 H 1.09004 * 109.87736 * 59.56333 * 11 10 8 39 39 H 1.08996 * 110.72383 * 219.44455 * 12 11 10 40 40 H 1.08998 * 110.71934 * 96.17103 * 12 11 10 41 41 H 1.09003 * 109.49362 * 67.29956 * 16 15 13 42 42 H 1.08998 * 109.49431 * 307.21355 * 16 15 13 43 43 H 1.08997 * 109.62860 * 186.45952 * 17 16 15 44 44 H 1.08997 * 109.78704 * 65.97344 * 17 16 15 45 45 H 0.97003 * 119.99886 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.63234 * 68.25095 * 27 18 17 47 47 H 1.08999 * 109.62828 * 188.83200 * 27 18 17 48 48 H 1.08994 * 109.49380 * 292.70926 * 28 15 13 49 49 H 1.08999 * 109.48754 * 52.78918 * 28 15 13 50 50 H 1.08994 * 110.36831 * 85.25724 * 29 10 8 51 51 H 1.09004 * 110.36584 * 322.93015 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6443 0.0006 5 6 4.7787 1.5291 0.0003 6 6 3.6439 -0.6979 0.0065 7 6 2.3372 -1.1432 0.0006 8 6 1.8917 -2.5485 0.0013 9 8 0.7040 -2.8097 0.0014 10 7 2.8005 -3.5437 0.0018 11 6 4.2606 -3.3707 0.0009 12 6 4.8889 -4.7799 0.0283 13 6 3.7506 -5.6566 0.6142 14 1 3.7332 -5.5992 1.7025 15 7 3.8748 -7.0499 0.1652 16 6 5.0446 -7.6969 0.7743 17 6 5.2434 -9.0806 0.1465 18 7 3.9849 -9.8325 0.2649 19 6 3.9679 -11.0956 0.7935 20 1 4.6966 -11.3790 1.5385 21 6 3.0176 -12.0134 0.3677 22 7 2.2699 -11.7475 -0.6823 23 14 2.7999 -13.6261 1.2850 24 1 2.4232 -13.3471 2.6941 25 1 1.7300 -14.4248 0.6349 26 1 4.0738 -14.3886 1.2549 27 6 2.7461 -9.1941 -0.2052 28 6 2.6447 -7.8037 0.4418 29 6 2.4953 -4.9860 0.0020 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5146 32 1 -0.3633 -0.8904 -0.5131 33 1 5.0678 1.7497 1.0278 34 1 5.6061 1.0388 -0.5127 35 1 4.5310 2.4574 -0.5147 36 1 4.5298 -1.3157 0.0121 37 1 4.5708 -2.8439 -0.9014 38 1 4.5680 -2.8106 0.8840 39 1 5.7639 -4.7995 0.6779 40 1 5.1476 -5.1065 -0.9789 41 1 4.8837 -7.8039 1.8470 42 1 5.9306 -7.0869 0.5980 43 1 6.0375 -9.6106 0.6724 44 1 5.5086 -8.9739 -0.9053 45 1 1.6056 -12.3887 -0.9796 46 1 2.7741 -9.0952 -1.2904 47 1 1.8883 -9.7993 0.0881 48 1 2.5173 -7.9092 1.5191 49 1 1.7902 -7.2711 0.0245 50 1 2.3345 -5.3399 -1.0163 51 1 1.6189 -5.1882 0.6177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051996155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = 69.215565 kcal Electronic energy + Delta-G solvation = -30996.722676 eV Core-core repulsion = 26933.170060 eV Total energy + Delta-G solvation = -4063.552617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.52284 -40.91981 -39.59119 -38.04917 -35.84028 -34.92278 -33.46961 -32.22519 -31.86398 -31.01625 -30.37337 -29.52446 -27.77326 -26.78024 -25.22302 -24.53172 -23.92498 -22.37499 -21.88264 -21.27501 -20.77261 -20.15829 -18.79253 -18.08707 -17.60856 -17.27021 -16.84605 -16.66256 -16.31459 -15.88967 -15.60494 -15.39548 -15.29700 -15.16298 -15.10424 -14.80361 -14.56190 -14.35363 -14.18165 -13.85532 -13.79345 -13.55128 -13.35561 -13.12915 -13.10001 -13.00882 -12.93304 -12.65075 -12.52215 -12.38937 -12.23983 -11.99663 -11.88634 -11.87478 -11.72623 -11.40405 -11.33403 -10.92527 -10.57970 -10.39109 -9.86141 -9.53201 -9.28430 -8.61632 -7.85344 -5.35422 0.49634 1.04764 1.43059 1.46818 1.49043 1.55777 1.94886 2.37685 2.51102 2.99365 3.29613 3.31347 3.46239 3.63637 3.70533 3.73259 4.05094 4.08955 4.11425 4.23344 4.31742 4.37340 4.39176 4.41019 4.44656 4.46594 4.57616 4.58655 4.65781 4.72230 4.73180 4.73670 4.77995 4.89069 4.92800 4.94097 4.96152 5.02293 5.13257 5.21560 5.27438 5.32631 5.41784 5.47702 5.62230 5.72142 5.89161 6.15440 6.28500 6.41060 6.46563 6.59464 7.15770 7.18923 7.85808 8.40521 9.20505 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002085 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.761703 B =13425.716367 C =14312.213249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.114 3.886 3 N -0.329 5.329 4 N -0.358 5.358 5 C 0.084 3.916 6 C 0.114 3.886 7 C -0.316 4.316 8 C 0.602 3.398 9 O -0.588 6.588 10 N -0.615 5.615 11 C 0.090 3.910 12 C -0.112 4.112 13 C 0.071 3.929 14 H 0.053 0.947 15 N -0.525 5.525 16 C 0.059 3.941 17 C 0.143 3.857 18 N -0.616 5.616 19 C -0.262 4.262 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.189 3.811 28 C 0.049 3.951 29 C 0.120 3.880 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.022 0.978 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.250 0.750 46 H -0.001 1.001 47 H 0.054 0.946 48 H 0.017 0.983 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.688 28.376 2.367 30.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 N -0.152 5.152 4 N -0.135 5.135 5 C -0.055 4.055 6 C -0.039 4.039 7 C -0.331 4.331 8 C 0.394 3.606 9 O -0.469 6.469 10 N -0.348 5.348 11 C -0.031 4.031 12 C -0.150 4.150 13 C -0.039 4.039 14 H 0.071 0.929 15 N -0.250 5.250 16 C -0.070 4.070 17 C 0.017 3.983 18 N -0.340 5.340 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.199 1.199 27 C 0.062 3.938 28 C -0.080 4.080 29 C -0.003 4.003 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.249 0.751 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.181 29.611 1.791 31.363 hybrid contribution -0.976 -2.272 1.021 2.675 sum 9.205 27.339 2.812 28.984 Atomic orbital electron populations 1.20291 0.85691 1.03716 1.03632 1.22666 0.97859 0.89220 0.95564 1.77124 0.87682 1.22834 1.27562 1.48780 1.06142 1.05648 1.52898 1.22476 0.82810 0.94647 1.05572 1.24322 0.99403 0.85366 0.94787 1.20118 0.93875 0.92842 1.26262 1.17227 0.84254 0.83864 0.75226 1.90726 1.17866 1.84665 1.53657 1.48227 1.08015 1.05347 1.73188 1.22669 0.77993 0.98863 1.03601 1.22722 0.97151 0.91499 1.03582 1.22771 0.95735 0.88284 0.97077 0.92898 1.61964 1.03369 1.00870 1.58825 1.22481 0.93420 0.95714 0.95412 1.21167 0.88329 0.91278 0.97480 1.44385 1.02732 1.14251 1.72645 1.19489 1.15392 0.88671 1.15712 0.91428 1.25931 1.00628 1.01016 0.97258 1.70137 1.25640 1.36886 1.25718 0.85301 0.77343 0.79582 0.77947 1.20467 1.22153 1.19896 1.20667 0.89712 0.89346 0.94029 1.22664 0.92250 0.95744 0.97357 1.22048 0.97554 0.79823 1.00883 0.89990 0.89784 0.90419 0.88607 0.85428 0.88694 0.75085 0.88336 0.88359 0.87097 0.89290 0.95993 0.87533 0.92027 0.96343 0.94136 0.98299 0.92775 0.96510 0.91024 0.91645 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.92 71.24 0.71 -0.96 16 2 C 0.11 2.74 7.26 43.52 0.32 3.05 16 3 N -0.33 -7.19 12.50 -46.67 -0.58 -7.77 16 4 N -0.36 -4.92 3.98 -367.79 -1.46 -6.38 16 5 C 0.08 0.24 11.44 127.77 1.46 1.70 16 6 C 0.11 1.50 9.97 84.28 0.84 2.34 16 7 C -0.32 -7.11 6.10 -20.15 -0.12 -7.23 16 8 C 0.60 16.76 7.85 86.66 0.68 17.44 16 9 O -0.59 -21.22 15.17 -4.05 -0.06 -21.28 16 10 N -0.61 -14.05 3.33 -815.64 -2.71 -16.76 16 11 C 0.09 1.08 4.98 86.73 0.43 1.51 16 12 C -0.11 -1.60 5.69 31.78 0.18 -1.42 16 13 C 0.07 1.69 2.72 46.31 0.13 1.81 16 14 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 15 N -0.53 -16.68 4.53 -860.93 -3.90 -20.57 16 16 C 0.06 1.80 5.53 86.38 0.48 2.28 16 17 C 0.14 5.74 6.69 86.35 0.58 6.31 16 18 N -0.62 -31.32 3.02 -697.27 -2.11 -33.43 16 19 C -0.26 -14.52 9.63 84.03 0.81 -13.72 16 20 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 21 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 22 N -0.94 -56.48 11.00 21.65 0.24 -56.24 16 23 Si 0.97 45.33 29.57 68.60 2.03 47.36 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.19 9.43 5.39 86.50 0.47 9.90 16 28 C 0.05 1.93 5.43 86.54 0.47 2.40 16 29 C 0.12 3.28 4.98 86.86 0.43 3.72 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.02 6.55 -2.39 -0.02 2.01 16 33 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.23 0.89 4.42 -2.91 -0.01 0.88 16 37 H 0.10 0.71 7.03 -2.39 -0.02 0.69 16 38 H 0.10 0.64 6.83 -2.39 -0.02 0.62 16 39 H 0.11 1.00 7.98 -2.39 -0.02 0.98 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 2.38 7.19 -2.39 -0.02 2.37 16 43 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.05 3.07 6.16 -2.39 -0.01 3.06 16 48 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 2.66 6.53 -2.39 -0.02 2.64 16 50 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 51 H 0.05 1.72 7.78 -2.39 -0.02 1.71 16 Total: -1.00 -81.46 395.28 0.65 -80.81 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.93 Total: 7.70 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 8.28 Total: 26.57 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -10.53 Total: -141.16 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -81.46 0.65 -80.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051996155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.022 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds