Wall clock time and date at job start Wed Apr 1 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35034 * 126.38073 * 2 1 4 4 H 0.96999 * 124.88848 * 359.71993 * 3 2 1 5 5 N 1.28472 * 110.23053 * 179.73867 * 3 2 1 6 6 C 1.31810 * 110.07309 * 359.97438 * 5 3 2 7 7 C 1.47702 * 126.51794 * 179.97438 * 6 5 3 8 8 O 1.21575 * 119.99953 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00327 * 0.03057 * 7 6 5 10 10 C 1.47024 * 125.64557 * 359.68989 * 9 7 6 11 11 C 1.54311 * 107.27470 * 180.97041 * 10 9 7 12 12 C 1.55155 * 102.86553 * 22.52414 * 11 10 9 13 13 H 1.08998 * 111.04260 * 82.38890 * 12 11 10 14 14 N 1.46902 * 111.00923 * 206.23327 * 12 11 10 15 15 C 1.46900 * 110.99603 * 297.95145 * 14 12 11 16 16 C 1.53240 * 109.34181 * 172.74467 * 15 14 12 17 17 N 1.47084 * 108.51867 * 53.82924 * 16 15 14 18 18 C 1.36931 * 120.87660 * 128.79882 * 17 16 15 19 19 H 1.08006 * 119.99440 * 206.93157 * 18 17 16 20 20 C 1.38809 * 120.00911 * 26.93134 * 18 17 16 21 21 N 1.31623 * 119.99429 * 17.12161 * 20 18 17 22 22 Si 1.86794 * 120.00411 * 197.12220 * 20 18 17 23 23 H 1.48497 * 109.47115 * 94.12745 * 22 20 18 24 24 H 1.48507 * 109.47168 * 214.12471 * 22 20 18 25 25 H 1.48495 * 109.47170 * 334.12377 * 22 20 18 26 26 C 1.47078 * 118.23753 * 308.81321 * 17 16 15 27 27 C 1.46897 * 111.00305 * 173.65052 * 14 12 11 28 28 C 1.47427 * 125.64832 * 179.97438 * 9 7 6 29 29 C 1.35362 * 126.38756 * 179.68957 * 2 1 3 30 30 C 1.50698 * 127.24907 * 0.26500 * 29 2 1 31 31 H 1.09001 * 109.46717 * 90.02552 * 1 2 3 32 32 H 1.09001 * 109.46649 * 210.02015 * 1 2 3 33 33 H 1.08997 * 109.47253 * 330.02413 * 1 2 3 34 34 H 1.09002 * 109.87893 * 300.51217 * 10 9 7 35 35 H 1.08997 * 109.88284 * 61.67622 * 10 9 7 36 36 H 1.08994 * 110.92482 * 264.11075 * 11 10 9 37 37 H 1.09002 * 110.59136 * 140.78047 * 11 10 9 38 38 H 1.09003 * 109.49373 * 292.70483 * 15 14 12 39 39 H 1.09001 * 109.49884 * 52.78301 * 15 14 12 40 40 H 1.09000 * 109.62436 * 294.11862 * 16 15 14 41 41 H 1.09001 * 109.62986 * 173.54212 * 16 15 14 42 42 H 0.97004 * 119.99791 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.63178 * 291.48389 * 26 17 16 44 44 H 1.08998 * 109.62706 * 170.89574 * 26 17 16 45 45 H 1.08996 * 109.49156 * 307.21139 * 27 14 12 46 46 H 1.08995 * 109.49079 * 67.26615 * 27 14 12 47 47 H 1.08998 * 110.36713 * 274.66970 * 28 9 7 48 48 H 1.08999 * 110.36734 * 36.89180 * 28 9 7 49 49 H 1.08999 * 109.47436 * 90.02308 * 30 29 2 50 50 H 1.09002 * 109.47218 * 210.02511 * 30 29 2 51 51 H 1.09005 * 109.47078 * 330.02076 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0058 -0.0039 5 7 3.5420 0.7298 0.0055 6 6 3.6321 -0.5852 0.0099 7 6 4.8765 -1.3809 0.0163 8 8 4.8215 -2.5954 0.0195 9 7 6.0731 -0.7606 0.0187 10 6 6.2839 0.6944 0.0090 11 6 7.8078 0.9365 -0.0088 12 6 8.3619 -0.3922 -0.5876 13 1 8.3055 -0.3986 -1.6761 14 7 9.7383 -0.6311 -0.1331 15 6 10.6394 0.4297 -0.6029 16 6 12.0189 0.2445 0.0380 17 7 12.4788 -1.1264 -0.2311 18 6 13.7184 -1.3600 -0.7638 19 1 13.8960 -2.2511 -1.3478 20 6 14.7468 -0.4518 -0.5533 21 7 14.6502 0.4401 0.4098 22 14 16.2678 -0.4954 -1.6369 23 1 16.1034 0.4626 -2.7595 24 1 17.4586 -0.1174 -0.8340 25 1 16.4507 -1.8660 -2.1784 26 6 11.5717 -2.2397 0.0870 27 6 10.2097 -1.9566 -0.5559 28 6 7.3872 -1.4287 0.0255 29 6 2.3100 -1.0897 0.0059 30 6 1.8855 -2.5356 0.0082 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 5.8272 1.1292 -0.8801 35 1 5.8505 1.1378 0.9054 36 1 8.1869 1.1059 0.9989 37 1 8.0553 1.7741 -0.6610 38 1 10.7318 0.3745 -1.6876 39 1 10.2349 1.4019 -0.3210 40 1 11.9468 0.4021 1.1141 41 1 12.7216 0.9577 -0.3930 42 1 15.3687 1.0750 0.5566 43 1 11.4566 -2.3209 1.1678 44 1 11.9787 -3.1689 -0.3117 45 1 9.4936 -2.7151 -0.2398 46 1 10.3077 -1.9787 -1.6412 47 1 7.6840 -1.6717 1.0458 48 1 7.3572 -2.3311 -0.5852 49 1 1.7873 -2.8871 -1.0189 50 1 2.6349 -3.1335 0.5268 51 1 0.9271 -2.6321 0.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052002674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:35 Heat of formation + Delta-G solvation = 77.890943 kcal Electronic energy + Delta-G solvation = -30901.353467 eV Core-core repulsion = 26838.177042 eV Total energy + Delta-G solvation = -4063.176424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.03409 -39.97252 -38.34748 -36.72328 -34.21774 -33.78790 -32.81852 -31.60045 -30.30108 -30.12067 -28.91810 -28.19820 -26.44698 -26.11656 -24.49917 -23.09592 -22.77933 -21.77465 -20.44249 -20.18161 -19.13929 -19.09837 -17.90824 -17.03454 -16.91397 -16.39877 -16.00815 -15.40008 -14.91609 -14.57017 -14.35991 -14.13083 -13.97731 -13.81779 -13.47614 -13.40159 -13.34790 -13.28700 -13.12656 -13.08113 -12.76203 -12.58709 -12.51414 -12.37238 -12.18274 -11.74677 -11.27760 -11.16173 -11.05161 -10.94455 -10.76443 -10.72878 -10.39443 -10.25595 -10.10294 -10.00842 -9.70143 -9.61679 -9.56067 -9.01314 -8.63475 -8.48723 -7.85437 -6.64021 -5.76097 -3.17118 1.33650 1.74725 2.46183 2.90225 3.26956 3.39135 3.46289 3.47750 4.07482 4.27032 4.30879 4.47183 4.52440 4.62616 4.73632 4.92149 4.97429 5.00365 5.14297 5.31530 5.33711 5.37596 5.39807 5.42648 5.51904 5.59218 5.64948 5.71430 5.82136 5.87727 5.89706 5.92125 5.97004 6.03575 6.15651 6.19514 6.23244 6.26223 6.33627 6.37503 6.56295 6.65167 6.72188 6.96523 7.25719 7.39978 7.54486 7.60747 7.65597 7.71665 7.83955 8.09381 8.45886 9.23685 9.87017 10.45752 11.32759 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.001959 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.974132 B =14292.398088 C =14873.450719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 N -0.382 5.382 4 H 0.444 0.556 5 N -0.252 5.252 6 C -0.005 4.005 7 C 0.615 3.385 8 O -0.532 6.532 9 N -0.605 5.605 10 C 0.114 3.886 11 C -0.125 4.125 12 C 0.069 3.931 13 H 0.050 0.950 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.118 3.882 29 C -0.144 4.144 30 C -0.079 4.079 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.818 3.145 -0.921 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 N -0.097 5.097 4 H 0.289 0.711 5 N -0.088 5.088 6 C -0.165 4.165 7 C 0.402 3.598 8 O -0.407 6.407 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.163 4.163 12 C -0.041 4.041 13 H 0.068 0.932 14 N -0.246 5.246 15 C -0.092 4.092 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.023 3.977 27 C -0.088 4.088 28 C -0.005 4.005 29 C -0.154 4.154 30 C -0.136 4.136 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.078 3.485 -0.355 29.288 hybrid contribution 0.192 0.143 -1.454 1.473 sum -28.886 3.628 -1.809 29.170 Atomic orbital electron populations 1.20340 0.86565 1.03908 1.03322 1.21202 0.95233 0.86912 1.08614 1.43247 1.03076 1.09442 1.53898 0.71138 1.73678 1.01247 1.14913 1.18934 1.21743 0.94629 0.89643 1.10525 1.16458 0.80540 0.85972 0.76816 1.90780 1.86133 1.12608 1.51206 1.48231 1.05294 1.08325 1.71971 1.22057 0.96346 0.80172 1.02359 1.22745 0.92927 0.97404 1.03240 1.22751 0.89988 0.94526 0.96839 0.93193 1.62016 0.99573 1.03395 1.59596 1.22910 0.95994 0.92856 0.97482 1.20858 0.89215 0.87571 0.97101 1.44124 1.13996 1.00202 1.73552 1.19214 0.86393 1.07737 1.24644 0.91646 1.25025 0.97344 1.00068 0.97346 1.70039 1.33256 1.21832 1.29669 0.86271 0.82664 0.77765 0.80065 1.21584 1.21784 1.20441 1.20976 0.88160 0.91793 0.96816 1.22676 0.98671 0.89673 0.97796 1.22266 0.80269 0.95636 1.02286 1.20110 0.90550 0.96730 1.08039 1.20195 1.01329 0.89709 1.02399 0.90316 0.89510 0.91138 0.91148 0.90924 0.89194 0.90222 0.95694 0.91884 0.95503 0.89438 0.93675 0.95569 0.92584 0.91790 0.95323 0.89926 0.90482 0.91437 0.89821 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.26 36.01 0.37 0.08 16 2 C 0.01 0.04 7.23 -82.21 -0.59 -0.55 16 3 N -0.38 -2.77 6.83 33.50 0.23 -2.54 16 4 H 0.44 1.51 8.96 -190.44 -1.71 -0.20 16 5 N -0.25 -2.67 9.76 33.42 0.33 -2.34 16 6 C 0.00 -0.06 6.98 -82.77 -0.58 -0.63 16 7 C 0.62 9.10 7.86 -12.39 -0.10 9.00 16 8 O -0.53 -9.06 15.37 5.30 0.08 -8.98 16 9 N -0.60 -8.31 3.33 -171.67 -0.57 -8.89 16 10 C 0.11 1.32 5.54 -3.07 -0.02 1.30 16 11 C -0.12 -1.52 5.34 -24.90 -0.13 -1.65 16 12 C 0.07 0.99 2.71 -65.55 -0.18 0.81 16 13 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 14 N -0.52 -9.06 4.53 -223.76 -1.01 -10.08 16 15 C 0.04 0.70 5.48 -3.70 -0.02 0.68 16 16 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 17 N -0.60 -15.13 3.04 -172.01 -0.52 -15.65 16 18 C -0.25 -6.93 9.63 -15.06 -0.14 -7.07 16 19 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 20 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 21 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 22 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 27 C 0.04 0.75 5.48 -3.70 -0.02 0.72 16 28 C 0.12 1.68 5.32 -2.51 -0.01 1.67 16 29 C -0.14 -1.51 6.25 -104.40 -0.65 -2.17 16 30 C -0.08 -0.73 9.74 36.00 0.35 -0.38 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.26 7.30 -51.93 -0.38 -0.12 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 35 H 0.07 0.81 7.76 -51.93 -0.40 0.41 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 1.06 6.87 -51.93 -0.36 0.71 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.32 6.15 -51.93 -0.32 2.00 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 45 H 0.06 1.02 6.79 -51.93 -0.35 0.67 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.08 1.14 7.74 -51.93 -0.40 0.74 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.95 6.72 -51.93 -0.35 0.60 16 51 H 0.06 0.40 7.31 -51.93 -0.38 0.02 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -33.54 396.55 -11.41 -44.95 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -9.65 Total: -2.76 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.86 Total: 9.18 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.93 Total: -65.16 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.54 -11.41 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052002674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.837 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds