Wall clock time and date at job start Wed Apr 1 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.35034 * 126.38073 * 2 1 4 4 H 0.96999 * 124.88848 * 359.71993 * 3 2 1 5 5 N 1.28472 * 110.23053 * 179.73867 * 3 2 1 6 6 C 1.31810 * 110.07309 * 359.97438 * 5 3 2 7 7 C 1.47702 * 126.51794 * 179.97438 * 6 5 3 8 8 O 1.21575 * 119.99953 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00327 * 0.03057 * 7 6 5 10 10 C 1.47024 * 125.64557 * 359.68989 * 9 7 6 11 11 C 1.54311 * 107.27470 * 180.97041 * 10 9 7 12 12 C 1.55155 * 102.86553 * 22.52414 * 11 10 9 13 13 H 1.08998 * 111.04260 * 82.38890 * 12 11 10 14 14 N 1.46902 * 111.00923 * 206.23327 * 12 11 10 15 15 C 1.46900 * 110.99603 * 297.95145 * 14 12 11 16 16 C 1.53240 * 109.34181 * 172.74467 * 15 14 12 17 17 N 1.47084 * 108.51867 * 53.82924 * 16 15 14 18 18 C 1.36931 * 120.87660 * 128.79882 * 17 16 15 19 19 H 1.08006 * 119.99440 * 206.93157 * 18 17 16 20 20 C 1.38809 * 120.00911 * 26.93134 * 18 17 16 21 21 N 1.31623 * 119.99429 * 17.12161 * 20 18 17 22 22 Si 1.86794 * 120.00411 * 197.12220 * 20 18 17 23 23 H 1.48497 * 109.47115 * 94.12745 * 22 20 18 24 24 H 1.48507 * 109.47168 * 214.12471 * 22 20 18 25 25 H 1.48495 * 109.47170 * 334.12377 * 22 20 18 26 26 C 1.47078 * 118.23753 * 308.81321 * 17 16 15 27 27 C 1.46897 * 111.00305 * 173.65052 * 14 12 11 28 28 C 1.47427 * 125.64832 * 179.97438 * 9 7 6 29 29 C 1.35362 * 126.38756 * 179.68957 * 2 1 3 30 30 C 1.50698 * 127.24907 * 0.26500 * 29 2 1 31 31 H 1.09001 * 109.46717 * 90.02552 * 1 2 3 32 32 H 1.09001 * 109.46649 * 210.02015 * 1 2 3 33 33 H 1.08997 * 109.47253 * 330.02413 * 1 2 3 34 34 H 1.09002 * 109.87893 * 300.51217 * 10 9 7 35 35 H 1.08997 * 109.88284 * 61.67622 * 10 9 7 36 36 H 1.08994 * 110.92482 * 264.11075 * 11 10 9 37 37 H 1.09002 * 110.59136 * 140.78047 * 11 10 9 38 38 H 1.09003 * 109.49373 * 292.70483 * 15 14 12 39 39 H 1.09001 * 109.49884 * 52.78301 * 15 14 12 40 40 H 1.09000 * 109.62436 * 294.11862 * 16 15 14 41 41 H 1.09001 * 109.62986 * 173.54212 * 16 15 14 42 42 H 0.97004 * 119.99791 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.63178 * 291.48389 * 26 17 16 44 44 H 1.08998 * 109.62706 * 170.89574 * 26 17 16 45 45 H 1.08996 * 109.49156 * 307.21139 * 27 14 12 46 46 H 1.08995 * 109.49079 * 67.26615 * 27 14 12 47 47 H 1.08998 * 110.36713 * 274.66970 * 28 9 7 48 48 H 1.08999 * 110.36734 * 36.89180 * 28 9 7 49 49 H 1.08999 * 109.47436 * 90.02308 * 30 29 2 50 50 H 1.09002 * 109.47218 * 210.02511 * 30 29 2 51 51 H 1.09005 * 109.47078 * 330.02076 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0058 -0.0039 5 7 3.5420 0.7298 0.0055 6 6 3.6321 -0.5852 0.0099 7 6 4.8765 -1.3809 0.0163 8 8 4.8215 -2.5954 0.0195 9 7 6.0731 -0.7606 0.0187 10 6 6.2839 0.6944 0.0090 11 6 7.8078 0.9365 -0.0088 12 6 8.3619 -0.3922 -0.5876 13 1 8.3055 -0.3986 -1.6761 14 7 9.7383 -0.6311 -0.1331 15 6 10.6394 0.4297 -0.6029 16 6 12.0189 0.2445 0.0380 17 7 12.4788 -1.1264 -0.2311 18 6 13.7184 -1.3600 -0.7638 19 1 13.8960 -2.2511 -1.3478 20 6 14.7468 -0.4518 -0.5533 21 7 14.6502 0.4401 0.4098 22 14 16.2678 -0.4954 -1.6369 23 1 16.1034 0.4626 -2.7595 24 1 17.4586 -0.1174 -0.8340 25 1 16.4507 -1.8660 -2.1784 26 6 11.5717 -2.2397 0.0870 27 6 10.2097 -1.9566 -0.5559 28 6 7.3872 -1.4287 0.0255 29 6 2.3100 -1.0897 0.0059 30 6 1.8855 -2.5356 0.0082 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 5.8272 1.1292 -0.8801 35 1 5.8505 1.1378 0.9054 36 1 8.1869 1.1059 0.9989 37 1 8.0553 1.7741 -0.6610 38 1 10.7318 0.3745 -1.6876 39 1 10.2349 1.4019 -0.3210 40 1 11.9468 0.4021 1.1141 41 1 12.7216 0.9577 -0.3930 42 1 15.3687 1.0750 0.5566 43 1 11.4566 -2.3209 1.1678 44 1 11.9787 -3.1689 -0.3117 45 1 9.4936 -2.7151 -0.2398 46 1 10.3077 -1.9787 -1.6412 47 1 7.6840 -1.6717 1.0458 48 1 7.3572 -2.3311 -0.5852 49 1 1.7873 -2.8871 -1.0189 50 1 2.6349 -3.1335 0.5268 51 1 0.9271 -2.6321 0.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052002674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:34 Heat of formation + Delta-G solvation = 54.812444 kcal Electronic energy + Delta-G solvation = -30902.354225 eV Core-core repulsion = 26838.177042 eV Total energy + Delta-G solvation = -4064.177183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.73359 -41.11353 -39.73277 -38.11557 -35.85029 -34.46492 -33.69927 -33.20231 -31.83115 -31.55547 -29.89073 -29.16512 -27.78212 -27.03136 -25.72382 -24.50300 -24.46422 -22.99323 -21.63336 -20.96372 -20.80418 -20.11990 -18.81602 -18.57742 -17.84116 -17.61882 -17.00706 -16.80277 -16.42095 -15.88317 -15.67500 -15.49583 -15.26249 -15.15460 -14.93518 -14.70358 -14.57833 -14.07887 -13.94757 -13.89315 -13.78589 -13.67769 -13.55018 -13.30715 -13.02111 -12.99245 -12.93210 -12.67253 -12.54349 -12.51723 -12.18100 -12.01599 -11.91292 -11.82177 -11.73791 -11.44609 -11.36576 -11.14954 -10.58262 -10.36873 -9.78113 -9.59903 -9.32774 -8.67648 -7.87252 -5.31827 0.47031 1.07748 1.46904 1.47749 1.57364 1.68580 2.09818 2.26723 2.51040 2.94111 3.20764 3.27839 3.49778 3.65756 3.70060 3.76918 4.01438 4.05960 4.19635 4.26615 4.31264 4.33695 4.35048 4.38635 4.55933 4.59986 4.64637 4.68748 4.76255 4.82184 4.86917 4.88484 4.89031 4.91131 4.98895 5.01649 5.04440 5.09988 5.17755 5.20807 5.23841 5.27454 5.37801 5.53685 5.62134 5.70219 6.11690 6.14429 6.22363 6.37689 6.39238 6.79326 7.05242 7.14214 7.84342 8.38762 9.19572 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.001959 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.974132 B =14292.398088 C =14873.450719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.027 3.973 3 N -0.364 5.364 4 H 0.462 0.538 5 N -0.260 5.260 6 C -0.037 4.037 7 C 0.608 3.392 8 O -0.567 6.567 9 N -0.607 5.607 10 C 0.122 3.878 11 C -0.117 4.117 12 C 0.073 3.927 13 H 0.052 0.948 14 N -0.526 5.526 15 C 0.054 3.946 16 C 0.185 3.815 17 N -0.614 5.614 18 C -0.263 4.263 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.146 3.854 27 C 0.053 3.947 28 C 0.123 3.877 29 C -0.175 4.175 30 C -0.074 4.074 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.019 0.981 39 H 0.089 0.911 40 H 0.001 0.999 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.017 0.983 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.647 4.386 -1.783 32.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 N -0.081 5.081 4 H 0.311 0.689 5 N -0.097 5.097 6 C -0.196 4.196 7 C 0.397 3.603 8 O -0.445 6.445 9 N -0.340 5.340 10 C 0.000 4.000 11 C -0.155 4.155 12 C -0.036 4.036 13 H 0.070 0.930 14 N -0.251 5.251 15 C -0.075 4.075 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.394 4.394 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.020 3.980 27 C -0.076 4.076 28 C 0.000 4.000 29 C -0.185 4.185 30 C -0.132 4.132 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.038 0.962 39 H 0.108 0.892 40 H 0.019 0.981 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -31.935 4.746 -1.222 32.308 hybrid contribution 0.966 -0.240 -1.131 1.507 sum -30.969 4.506 -2.353 31.383 Atomic orbital electron populations 1.20536 0.83318 1.05512 1.04703 1.21695 0.96845 0.85709 1.05666 1.43377 1.02224 1.10582 1.51960 0.68936 1.73575 1.02879 1.13945 1.19293 1.21563 0.94380 0.90495 1.13151 1.16877 0.81403 0.85913 0.76123 1.90746 1.86754 1.14118 1.52835 1.48307 1.04829 1.09190 1.71679 1.22077 0.95873 0.78897 1.03156 1.22739 0.93001 0.96601 1.03197 1.22716 0.87878 0.96020 0.96967 0.92966 1.61926 1.00772 1.02553 1.59863 1.22582 0.93752 0.94657 0.96465 1.20641 0.91324 0.86505 0.95575 1.44408 1.14087 1.01597 1.73728 1.19523 0.87518 1.07762 1.24553 0.91684 1.25783 1.00251 0.99997 0.98567 1.70191 1.34066 1.22579 1.31170 0.85239 0.78914 0.78028 0.78174 1.21200 1.22086 1.19467 1.21097 0.89389 0.90976 0.96551 1.22483 0.97171 0.90864 0.97082 1.22111 0.80874 0.95486 1.01562 1.20395 0.90365 0.98029 1.09697 1.20139 1.01729 0.88976 1.02311 0.88879 0.88754 0.88720 0.90204 0.90211 0.89608 0.88391 0.96244 0.89232 0.98121 0.92412 0.94034 0.96506 0.92279 0.89441 0.95757 0.90788 0.91256 0.91515 0.92715 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.26 71.24 0.73 0.49 16 2 C 0.03 0.33 7.23 41.40 0.30 0.63 16 3 N -0.36 -4.24 6.83 -47.93 -0.33 -4.57 16 4 H 0.46 1.52 8.96 -219.99 -1.97 -0.45 16 5 N -0.26 -5.03 9.76 -48.18 -0.47 -5.50 16 6 C -0.04 -0.90 6.98 42.46 0.30 -0.61 16 7 C 0.61 18.18 7.86 86.74 0.68 18.86 16 8 O -0.57 -20.03 15.37 -3.95 -0.06 -20.09 16 9 N -0.61 -16.40 3.33 -815.32 -2.71 -19.12 16 10 C 0.12 2.63 5.54 86.72 0.48 3.11 16 11 C -0.12 -2.61 5.34 31.78 0.17 -2.44 16 12 C 0.07 2.02 2.71 46.31 0.13 2.14 16 13 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 14 N -0.53 -17.91 4.53 -861.86 -3.90 -21.81 16 15 C 0.05 2.05 5.48 86.38 0.47 2.52 16 16 C 0.19 9.10 5.42 86.35 0.47 9.57 16 17 N -0.61 -31.83 3.04 -698.12 -2.12 -33.95 16 18 C -0.26 -14.81 9.63 84.03 0.81 -14.01 16 19 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 20 C -0.05 -2.86 4.93 84.86 0.42 -2.44 16 21 N -0.93 -55.76 11.19 21.65 0.24 -55.51 16 22 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C 0.15 6.33 6.69 86.35 0.58 6.90 16 27 C 0.05 1.90 5.48 86.39 0.47 2.37 16 28 C 0.12 3.45 5.32 86.86 0.46 3.91 16 29 C -0.17 -3.47 6.25 -19.72 -0.12 -3.59 16 30 C -0.07 -1.33 9.74 71.24 0.69 -0.64 16 31 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.09 0.21 7.30 -2.39 -0.02 0.19 16 33 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 35 H 0.08 1.63 7.76 -2.39 -0.02 1.61 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 2.88 6.87 -2.39 -0.02 2.87 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 2.48 7.95 -2.39 -0.02 2.46 16 45 H 0.09 2.72 6.79 -2.39 -0.02 2.70 16 46 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.07 2.05 7.74 -2.39 -0.02 2.03 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.30 6.72 -2.39 -0.02 1.28 16 51 H 0.09 1.02 7.31 -2.38 -0.02 1.00 16 Total: -1.00 -75.42 396.55 -1.32 -76.74 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -1.03 Total: 9.60 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.04 Total: 26.78 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -9.29 Total: -140.47 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.06 Total: -20.09 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.42 -1.32 -76.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052002674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.549 kcal (2) G-P(sol) polarization free energy of solvation -75.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds