Wall clock time and date at job start Wed Apr 1 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35306 * 126.13087 * 2 1 4 4 C 1.39875 * 107.92222 * 180.14977 * 3 2 1 5 5 C 1.50701 * 125.89900 * 179.87010 * 4 3 2 6 6 C 1.50694 * 109.47267 * 124.71615 * 5 4 3 7 7 O 1.21277 * 119.99963 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99830 * 179.97438 * 6 5 4 9 9 C 1.47018 * 125.64958 * 359.69131 * 8 6 5 10 10 C 1.54316 * 107.27670 * 180.96960 * 9 8 6 11 11 C 1.55156 * 102.86087 * 22.52280 * 10 9 8 12 12 H 1.09007 * 111.00525 * 82.38385 * 11 10 9 13 13 N 1.46905 * 111.03706 * 206.21558 * 11 10 9 14 14 C 1.46904 * 110.99894 * 296.24161 * 13 11 10 15 15 C 1.53235 * 109.33800 * 172.74405 * 14 13 11 16 16 N 1.47081 * 108.52198 * 53.83273 * 15 14 13 17 17 C 1.36934 * 120.88547 * 128.79268 * 16 15 14 18 18 H 1.07997 * 120.00350 * 208.80929 * 17 16 15 19 19 C 1.38814 * 119.99848 * 28.80192 * 17 16 15 20 20 N 1.31614 * 120.00211 * 14.67272 * 19 17 16 21 21 Si 1.86804 * 119.99933 * 194.67564 * 19 17 16 22 22 H 1.48501 * 109.47168 * 60.00020 * 21 19 17 23 23 H 1.48498 * 109.46879 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46924 * 300.00167 * 21 19 17 25 25 C 1.47082 * 118.23235 * 308.81040 * 16 15 14 26 26 C 1.46890 * 111.00199 * 171.93828 * 13 11 10 27 27 C 1.47423 * 125.64748 * 179.97438 * 8 6 5 28 28 N 1.30830 * 108.19995 * 359.60301 * 4 3 2 29 29 N 1.34949 * 126.12500 * 179.71352 * 2 1 3 30 30 H 0.97008 * 126.03473 * 359.97438 * 29 2 1 31 31 H 1.09005 * 109.46442 * 270.26308 * 1 2 3 32 32 H 1.08997 * 109.47087 * 30.26067 * 1 2 3 33 33 H 1.08995 * 109.47415 * 150.26586 * 1 2 3 34 34 H 1.08005 * 126.04111 * 0.03420 * 3 2 1 35 35 H 1.09004 * 109.46987 * 244.71722 * 5 4 3 36 36 H 1.09005 * 109.47280 * 4.70864 * 5 4 3 37 37 H 1.09006 * 109.88139 * 300.51230 * 9 8 6 38 38 H 1.08996 * 109.88509 * 61.67905 * 9 8 6 39 39 H 1.09000 * 110.92546 * 264.11193 * 10 9 8 40 40 H 1.09004 * 110.74339 * 140.85419 * 10 9 8 41 41 H 1.09005 * 109.49181 * 292.70289 * 14 13 11 42 42 H 1.08995 * 109.49315 * 52.78334 * 14 13 11 43 43 H 1.08997 * 109.62999 * 294.11439 * 15 14 13 44 44 H 1.09000 * 109.62747 * 173.53803 * 15 14 13 45 45 H 0.96997 * 120.00136 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.63110 * 291.47336 * 25 16 15 47 47 H 1.09007 * 109.62280 * 170.89790 * 25 16 15 48 48 H 1.08999 * 109.49356 * 307.21446 * 26 13 11 49 49 H 1.09004 * 109.49472 * 67.26754 * 26 13 11 50 50 H 1.08995 * 110.36924 * 274.67618 * 27 8 6 51 51 H 1.09001 * 110.36651 * 36.99539 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 3.6336 0.6558 -0.0035 5 6 4.8544 1.5393 -0.0075 6 6 5.7390 1.1790 1.1581 7 8 5.4103 0.2925 1.9176 8 7 6.8956 1.8421 1.3565 9 6 7.4159 2.9284 0.5136 10 6 8.7719 3.3615 1.1095 11 6 9.2101 2.1105 1.9160 12 1 9.6806 1.3721 1.2666 13 7 10.1043 2.4818 3.0207 14 6 11.3556 3.0606 2.5134 15 6 12.1790 3.5984 3.6885 16 7 12.3475 2.5193 4.6736 17 6 13.5876 2.1943 5.1549 18 1 13.7940 1.1845 5.4774 19 6 14.5793 3.1628 5.2283 20 7 14.2654 4.4360 5.1163 21 14 16.3596 2.6589 5.4858 22 1 16.7936 1.7850 4.3664 23 1 17.2159 3.8713 5.5287 24 1 16.4843 1.9198 6.7678 25 6 11.1486 1.7984 5.1276 26 6 10.3657 1.3314 3.8959 27 6 7.8511 1.5941 2.4514 28 7 3.6334 -0.6525 0.0031 29 7 2.3026 -1.0900 0.0055 30 1 2.0054 -2.0134 0.0104 31 1 -0.3632 0.0047 1.0277 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3634 -0.8923 -0.5097 34 1 1.9742 2.1210 0.0005 35 1 5.4034 1.3961 -0.9382 36 1 4.5486 2.5821 0.0771 37 1 7.5545 2.5717 -0.5071 38 1 6.7232 3.7698 0.5236 39 1 8.6509 4.2217 1.7678 40 1 9.4889 3.5809 0.3183 41 1 11.9260 2.2926 1.9908 42 1 11.1272 3.8753 1.8263 43 1 11.6559 4.4364 4.1490 44 1 13.1561 3.9245 3.3320 45 1 14.9584 5.1127 5.1679 46 1 10.5264 2.4632 5.7267 47 1 11.4445 0.9343 5.7227 48 1 9.4194 0.8920 4.2115 49 1 10.9495 0.5873 3.3540 50 1 7.5589 2.1489 3.3429 51 1 7.9098 0.5278 2.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052010531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:52 Heat of formation + Delta-G solvation = 77.509767 kcal Electronic energy + Delta-G solvation = -30321.225648 eV Core-core repulsion = 26258.032695 eV Total energy + Delta-G solvation = -4063.192953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.54227 -40.09771 -38.42447 -36.73648 -34.14992 -33.62999 -32.00510 -31.60144 -30.35301 -30.22369 -29.18819 -28.00633 -27.28519 -25.84810 -23.77836 -22.80757 -22.22485 -21.04425 -20.62092 -20.22055 -19.12623 -18.89423 -17.71195 -17.17176 -17.04952 -16.23690 -15.49237 -15.32305 -15.00223 -14.62277 -14.23839 -14.18907 -14.07323 -13.96310 -13.71941 -13.41523 -13.37306 -13.33714 -13.21343 -13.08835 -12.82536 -12.61370 -12.45778 -12.33038 -12.10287 -11.81282 -11.28086 -11.16349 -11.01074 -10.85279 -10.77867 -10.72146 -10.44377 -10.27078 -10.03533 -9.95783 -9.72184 -9.59020 -9.50204 -8.85258 -8.68722 -8.49567 -7.87433 -6.61782 -5.76738 -3.20230 1.62258 2.38628 2.58443 2.60278 2.97174 3.39370 3.44728 3.46018 4.22345 4.23094 4.28204 4.44138 4.51367 4.62340 4.65676 4.81830 4.86752 4.98231 5.01611 5.12987 5.25788 5.32558 5.34992 5.38938 5.41936 5.45631 5.47751 5.49457 5.77213 5.81598 5.85998 5.89195 5.92179 5.99224 6.11439 6.17773 6.21142 6.29145 6.34031 6.37143 6.55137 6.71075 6.95763 7.02805 7.24540 7.42895 7.47678 7.58901 7.64521 7.70643 7.82570 8.12340 8.46521 9.23487 9.85894 10.45561 11.32095 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.001743 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.855245 B =16056.412431 C =16463.419511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.265 4.265 4 C 0.088 3.912 5 C -0.055 4.055 6 C 0.531 3.469 7 O -0.525 6.525 8 N -0.620 5.620 9 C 0.101 3.899 10 C -0.123 4.123 11 C 0.068 3.932 12 H 0.050 0.950 13 N -0.521 5.521 14 C 0.036 3.964 15 C 0.180 3.820 16 N -0.595 5.595 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.149 3.851 26 C 0.041 3.959 27 C 0.118 3.882 28 N -0.261 5.261 29 N -0.475 5.475 30 H 0.436 0.564 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.410 -3.455 -15.287 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.080 4.080 5 C -0.096 4.096 6 C 0.318 3.682 7 O -0.400 6.400 8 N -0.356 5.356 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.042 4.042 12 H 0.068 0.932 13 N -0.246 5.246 14 C -0.093 4.093 15 C 0.054 3.946 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.022 3.978 26 C -0.088 4.088 27 C -0.005 4.005 28 N -0.083 5.083 29 N -0.184 5.184 30 H 0.280 0.720 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.049 -4.508 -14.573 29.328 hybrid contribution 0.755 -0.523 -0.389 0.997 sum -24.294 -5.030 -14.962 28.972 Atomic orbital electron populations 1.20453 0.87260 1.03858 1.03501 1.21093 0.94587 0.87782 1.01254 1.21081 0.91311 0.99225 1.17854 1.21505 0.94460 0.91610 1.00403 1.19999 0.91768 0.99278 0.98590 1.19981 0.80309 0.81495 0.86437 1.90755 1.71916 1.30322 1.46997 1.48436 1.20812 1.36697 1.29616 1.22094 0.95972 0.89664 0.94480 1.22687 0.94739 0.98884 0.99812 1.22757 0.92811 0.95785 0.92810 0.93236 1.62023 1.15279 1.30392 1.16895 1.22919 0.89132 0.97749 0.99471 1.20841 0.97842 0.89461 0.86487 1.44082 1.01811 1.39538 1.46390 1.19142 0.87486 0.93497 1.38141 0.91833 1.25075 0.98887 0.95035 1.00538 1.69992 1.31914 0.98845 1.54102 0.86361 0.84890 0.77233 0.78201 1.21114 1.21607 1.20891 1.20980 0.88688 0.95605 0.92479 1.22673 0.98896 0.91141 0.96094 1.22212 0.87027 1.01328 0.89934 1.77422 0.95624 1.12442 1.22827 1.46342 1.04162 1.08225 1.59702 0.71993 0.90105 0.89523 0.91147 0.83488 0.87297 0.86906 0.91392 0.91041 0.89084 0.90121 0.95706 0.91909 0.95488 0.89527 0.93580 0.95593 0.92614 0.91845 0.95353 0.90226 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.43 36.01 0.38 0.01 16 2 C 0.08 0.66 7.21 -82.26 -0.59 0.07 16 3 C -0.27 -2.48 10.64 -40.01 -0.43 -2.91 16 4 C 0.09 1.02 6.02 -82.41 -0.50 0.52 16 5 C -0.05 -0.51 5.47 -29.04 -0.16 -0.67 16 6 C 0.53 7.03 7.84 -10.99 -0.09 6.95 16 7 O -0.52 -9.32 15.82 5.56 0.09 -9.23 16 8 N -0.62 -7.47 3.33 -170.52 -0.57 -8.04 16 9 C 0.10 0.89 6.48 -3.07 -0.02 0.87 16 10 C -0.12 -1.31 5.44 -24.90 -0.14 -1.45 16 11 C 0.07 0.94 2.71 -65.55 -0.18 0.76 16 12 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 13 N -0.52 -8.90 4.53 -223.77 -1.01 -9.91 16 14 C 0.04 0.68 5.49 -3.70 -0.02 0.66 16 15 C 0.18 4.26 5.39 -3.60 -0.02 4.24 16 16 N -0.59 -15.06 3.03 -172.02 -0.52 -15.58 16 17 C -0.25 -6.99 9.62 -15.06 -0.14 -7.13 16 18 H 0.06 1.73 7.87 -52.49 -0.41 1.32 16 19 C 0.00 0.09 4.98 -17.43 -0.09 0.00 16 20 N -0.90 -26.14 11.17 55.49 0.62 -25.52 16 21 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 26 C 0.04 0.75 5.46 -3.71 -0.02 0.73 16 27 C 0.12 1.63 5.23 -2.52 -0.01 1.61 16 28 N -0.26 -3.46 12.04 33.67 0.41 -3.06 16 29 N -0.48 -4.56 7.36 33.48 0.25 -4.31 16 30 H 0.44 2.82 8.96 -182.60 -1.64 1.18 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.27 6.22 -51.93 -0.32 1.95 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.16 7.95 -51.92 -0.41 0.75 16 48 H 0.06 1.03 6.73 -51.93 -0.35 0.68 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.07 1.12 7.74 -51.93 -0.40 0.72 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -35.77 403.94 -11.51 -47.28 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -9.78 Total: -1.86 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.05 Total: 7.44 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.83 Total: -66.41 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.77 -11.51 -47.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052010531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.794 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds