Wall clock time and date at job start Wed Apr 1 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35306 * 126.13087 * 2 1 4 4 C 1.39875 * 107.92222 * 180.14977 * 3 2 1 5 5 C 1.50701 * 125.89900 * 179.87010 * 4 3 2 6 6 C 1.50694 * 109.47267 * 124.71615 * 5 4 3 7 7 O 1.21277 * 119.99963 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99830 * 179.97438 * 6 5 4 9 9 C 1.47018 * 125.64958 * 359.69131 * 8 6 5 10 10 C 1.54316 * 107.27670 * 180.96960 * 9 8 6 11 11 C 1.55156 * 102.86087 * 22.52280 * 10 9 8 12 12 H 1.09007 * 111.00525 * 82.38385 * 11 10 9 13 13 N 1.46905 * 111.03706 * 206.21558 * 11 10 9 14 14 C 1.46904 * 110.99894 * 296.24161 * 13 11 10 15 15 C 1.53235 * 109.33800 * 172.74405 * 14 13 11 16 16 N 1.47081 * 108.52198 * 53.83273 * 15 14 13 17 17 C 1.36934 * 120.88547 * 128.79268 * 16 15 14 18 18 H 1.07997 * 120.00350 * 208.80929 * 17 16 15 19 19 C 1.38814 * 119.99848 * 28.80192 * 17 16 15 20 20 N 1.31614 * 120.00211 * 14.67272 * 19 17 16 21 21 Si 1.86804 * 119.99933 * 194.67564 * 19 17 16 22 22 H 1.48501 * 109.47168 * 60.00020 * 21 19 17 23 23 H 1.48498 * 109.46879 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46924 * 300.00167 * 21 19 17 25 25 C 1.47082 * 118.23235 * 308.81040 * 16 15 14 26 26 C 1.46890 * 111.00199 * 171.93828 * 13 11 10 27 27 C 1.47423 * 125.64748 * 179.97438 * 8 6 5 28 28 N 1.30830 * 108.19995 * 359.60301 * 4 3 2 29 29 N 1.34949 * 126.12500 * 179.71352 * 2 1 3 30 30 H 0.97008 * 126.03473 * 359.97438 * 29 2 1 31 31 H 1.09005 * 109.46442 * 270.26308 * 1 2 3 32 32 H 1.08997 * 109.47087 * 30.26067 * 1 2 3 33 33 H 1.08995 * 109.47415 * 150.26586 * 1 2 3 34 34 H 1.08005 * 126.04111 * 0.03420 * 3 2 1 35 35 H 1.09004 * 109.46987 * 244.71722 * 5 4 3 36 36 H 1.09005 * 109.47280 * 4.70864 * 5 4 3 37 37 H 1.09006 * 109.88139 * 300.51230 * 9 8 6 38 38 H 1.08996 * 109.88509 * 61.67905 * 9 8 6 39 39 H 1.09000 * 110.92546 * 264.11193 * 10 9 8 40 40 H 1.09004 * 110.74339 * 140.85419 * 10 9 8 41 41 H 1.09005 * 109.49181 * 292.70289 * 14 13 11 42 42 H 1.08995 * 109.49315 * 52.78334 * 14 13 11 43 43 H 1.08997 * 109.62999 * 294.11439 * 15 14 13 44 44 H 1.09000 * 109.62747 * 173.53803 * 15 14 13 45 45 H 0.96997 * 120.00136 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.63110 * 291.47336 * 25 16 15 47 47 H 1.09007 * 109.62280 * 170.89790 * 25 16 15 48 48 H 1.08999 * 109.49356 * 307.21446 * 26 13 11 49 49 H 1.09004 * 109.49472 * 67.26754 * 26 13 11 50 50 H 1.08995 * 110.36924 * 274.67618 * 27 8 6 51 51 H 1.09001 * 110.36651 * 36.99539 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 3.6336 0.6558 -0.0035 5 6 4.8544 1.5393 -0.0075 6 6 5.7390 1.1790 1.1581 7 8 5.4103 0.2925 1.9176 8 7 6.8956 1.8421 1.3565 9 6 7.4159 2.9284 0.5136 10 6 8.7719 3.3615 1.1095 11 6 9.2101 2.1105 1.9160 12 1 9.6806 1.3721 1.2666 13 7 10.1043 2.4818 3.0207 14 6 11.3556 3.0606 2.5134 15 6 12.1790 3.5984 3.6885 16 7 12.3475 2.5193 4.6736 17 6 13.5876 2.1943 5.1549 18 1 13.7940 1.1845 5.4774 19 6 14.5793 3.1628 5.2283 20 7 14.2654 4.4360 5.1163 21 14 16.3596 2.6589 5.4858 22 1 16.7936 1.7850 4.3664 23 1 17.2159 3.8713 5.5287 24 1 16.4843 1.9198 6.7678 25 6 11.1486 1.7984 5.1276 26 6 10.3657 1.3314 3.8959 27 6 7.8511 1.5941 2.4514 28 7 3.6334 -0.6525 0.0031 29 7 2.3026 -1.0900 0.0055 30 1 2.0054 -2.0134 0.0104 31 1 -0.3632 0.0047 1.0277 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3634 -0.8923 -0.5097 34 1 1.9742 2.1210 0.0005 35 1 5.4034 1.3961 -0.9382 36 1 4.5486 2.5821 0.0771 37 1 7.5545 2.5717 -0.5071 38 1 6.7232 3.7698 0.5236 39 1 8.6509 4.2217 1.7678 40 1 9.4889 3.5809 0.3183 41 1 11.9260 2.2926 1.9908 42 1 11.1272 3.8753 1.8263 43 1 11.6559 4.4364 4.1490 44 1 13.1561 3.9245 3.3320 45 1 14.9584 5.1127 5.1679 46 1 10.5264 2.4632 5.7267 47 1 11.4445 0.9343 5.7227 48 1 9.4194 0.8920 4.2115 49 1 10.9495 0.5873 3.3540 50 1 7.5589 2.1489 3.3429 51 1 7.9098 0.5278 2.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052010531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:51 Heat of formation + Delta-G solvation = 51.785218 kcal Electronic energy + Delta-G solvation = -30322.341148 eV Core-core repulsion = 26258.032695 eV Total energy + Delta-G solvation = -4064.308453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.23047 -41.11753 -39.76342 -38.06679 -35.80042 -34.34479 -33.40808 -32.51546 -31.82365 -31.60020 -30.14380 -29.14953 -27.82272 -27.50140 -25.13811 -24.44540 -23.61394 -21.83368 -21.53181 -21.21830 -20.80089 -19.75590 -18.81835 -18.40356 -18.03351 -17.55943 -16.83232 -16.43293 -16.16731 -15.87376 -15.60530 -15.34402 -15.26012 -15.23187 -14.92504 -14.68735 -14.55459 -14.43637 -14.03425 -13.88752 -13.70407 -13.59456 -13.45625 -13.30358 -13.06767 -12.95305 -12.77963 -12.66123 -12.54708 -12.50581 -12.18378 -12.01924 -11.87088 -11.77804 -11.50261 -11.43273 -11.36394 -10.95770 -10.58219 -10.26370 -9.65257 -9.50478 -9.32198 -8.64899 -7.87302 -5.34527 0.95777 1.47058 1.48620 1.55885 1.63801 1.64288 1.98526 2.11601 2.50734 2.97262 3.28492 3.36811 3.59736 3.67989 3.73108 3.77522 4.01592 4.08866 4.19407 4.22609 4.32283 4.36636 4.41393 4.45693 4.49674 4.56546 4.60101 4.67528 4.68909 4.74946 4.77485 4.84019 4.88040 4.88348 4.94227 5.02816 5.05854 5.12600 5.19588 5.23382 5.27935 5.32246 5.37420 5.61393 5.70162 5.71099 6.13392 6.24712 6.38887 6.47578 6.53358 6.77616 7.14719 7.16573 7.83771 8.38955 9.19158 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.001743 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.855245 B =16056.412431 C =16463.419511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.086 3.914 3 C -0.284 4.284 4 C 0.071 3.929 5 C -0.047 4.047 6 C 0.525 3.475 7 O -0.581 6.581 8 N -0.618 5.618 9 C 0.102 3.898 10 C -0.118 4.118 11 C 0.070 3.930 12 H 0.049 0.951 13 N -0.526 5.526 14 C 0.055 3.945 15 C 0.186 3.814 16 N -0.614 5.614 17 C -0.269 4.269 18 H 0.063 0.937 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.146 3.854 26 C 0.054 3.946 27 C 0.122 3.878 28 N -0.319 5.319 29 N -0.479 5.479 30 H 0.445 0.555 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.017 0.983 42 H 0.093 0.907 43 H 0.002 0.998 44 H 0.057 0.943 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.021 0.979 50 H 0.068 0.932 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.187 -2.806 -17.528 32.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.313 4.313 4 C -0.096 4.096 5 C -0.088 4.088 6 C 0.315 3.685 7 O -0.460 6.460 8 N -0.353 5.353 9 C -0.020 4.020 10 C -0.156 4.156 11 C -0.039 4.039 12 H 0.067 0.933 13 N -0.251 5.251 14 C -0.074 4.074 15 C 0.060 3.940 16 N -0.338 5.338 17 C -0.399 4.399 18 H 0.080 0.920 19 C -0.242 4.242 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.020 3.980 26 C -0.075 4.075 27 C -0.002 4.002 28 N -0.142 5.142 29 N -0.189 5.189 30 H 0.290 0.710 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.035 0.965 42 H 0.111 0.889 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.035 0.965 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.039 0.961 50 H 0.086 0.914 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.842 -3.854 -16.845 31.923 hybrid contribution 1.217 -0.748 0.360 1.473 sum -25.625 -4.602 -16.485 30.815 Atomic orbital electron populations 1.20599 0.84195 1.05510 1.04423 1.21794 0.96387 0.87022 0.99079 1.21481 0.90647 1.00764 1.18436 1.21989 0.96087 0.91495 0.99998 1.20134 0.90550 1.00688 0.97395 1.20729 0.80480 0.80544 0.86781 1.90729 1.73236 1.32835 1.49203 1.48515 1.20196 1.37234 1.29321 1.22347 0.95238 0.89610 0.94808 1.22714 0.96273 0.96861 0.99732 1.22762 0.91627 0.97705 0.91830 0.93340 1.61940 1.14740 1.30111 1.18313 1.22588 0.89091 0.98378 0.97373 1.20633 0.96868 0.88765 0.87685 1.44361 1.02278 1.40027 1.47130 1.19457 0.88841 0.93599 1.38020 0.91974 1.25821 1.02658 0.94995 1.00730 1.70150 1.32813 0.99687 1.55197 0.85329 0.79998 0.76753 0.78241 1.20473 1.21678 1.20328 1.21083 0.87774 0.95033 0.94099 1.22449 0.99030 0.91228 0.94818 1.21984 0.87776 0.99856 0.90541 1.77323 0.97793 1.13867 1.25211 1.46410 1.03568 1.09245 1.59646 0.71008 0.89361 0.87816 0.89575 0.81139 0.85061 0.83320 0.88643 0.87983 0.89616 0.88272 0.96466 0.88878 0.98014 0.92504 0.93945 0.96531 0.92562 0.89907 0.96080 0.91411 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.43 71.24 0.74 0.27 16 2 C 0.09 1.27 7.21 41.40 0.30 1.57 16 3 C -0.28 -4.77 10.64 21.99 0.23 -4.54 16 4 C 0.07 1.56 6.02 43.10 0.26 1.82 16 5 C -0.05 -0.75 5.47 29.10 0.16 -0.59 16 6 C 0.53 13.29 7.84 87.65 0.69 13.97 16 7 O -0.58 -21.02 15.82 -3.02 -0.05 -21.06 16 8 N -0.62 -13.64 3.33 -811.81 -2.70 -16.34 16 9 C 0.10 1.36 6.48 86.73 0.56 1.92 16 10 C -0.12 -2.12 5.44 31.78 0.17 -1.95 16 11 C 0.07 1.81 2.71 46.31 0.13 1.93 16 12 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 13 N -0.53 -17.59 4.53 -861.88 -3.90 -21.49 16 14 C 0.05 2.01 5.49 86.38 0.47 2.49 16 15 C 0.19 9.05 5.39 86.35 0.47 9.51 16 16 N -0.61 -31.86 3.03 -698.13 -2.11 -33.97 16 17 C -0.27 -15.17 9.62 84.03 0.81 -14.36 16 18 H 0.06 3.44 7.87 -2.91 -0.02 3.42 16 19 C -0.05 -2.61 4.98 84.86 0.42 -2.19 16 20 N -0.93 -55.27 11.17 21.65 0.24 -55.03 16 21 Si 0.97 45.21 29.58 68.60 2.03 47.24 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 C 0.15 6.41 6.69 86.35 0.58 6.99 16 26 C 0.05 1.96 5.46 86.38 0.47 2.43 16 27 C 0.12 3.29 5.23 86.86 0.45 3.74 16 28 N -0.32 -8.48 12.04 -47.38 -0.57 -9.05 16 29 N -0.48 -9.00 7.36 -48.00 -0.35 -9.35 16 30 H 0.44 5.73 8.96 -213.32 -1.91 3.82 16 31 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.15 1.24 8.12 -2.38 -0.02 1.22 16 37 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.47 7.94 -2.38 -0.02 1.45 16 41 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.09 2.85 6.93 -2.39 -0.02 2.84 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.06 3.08 6.22 -2.39 -0.01 3.06 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 2.41 7.95 -2.38 -0.02 2.39 16 48 H 0.08 2.68 6.73 -2.39 -0.02 2.66 16 49 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.05 1.65 7.74 -2.39 -0.02 1.63 16 Total: -1.00 -82.21 403.94 -1.49 -83.70 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -0.98 Total: 12.34 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 6.92 Total: 23.03 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -9.40 Total: -145.24 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -82.21 -1.49 -83.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052010531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.484 kcal (2) G-P(sol) polarization free energy of solvation -82.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds