Wall clock time and date at job start Wed Apr 1 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46940 * 2 1 4 4 N 1.30446 * 125.99019 * 269.96645 * 3 2 1 5 5 N 1.39933 * 108.89776 * 179.76825 * 4 3 2 6 6 H 0.97003 * 125.75309 * 180.27016 * 5 4 3 7 7 C 1.34259 * 108.49371 * 0.43626 * 5 4 3 8 8 C 1.38043 * 107.41312 * 359.57680 * 7 5 4 9 9 C 1.47433 * 126.41245 * 180.26519 * 8 7 5 10 10 O 1.21608 * 119.99827 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00066 * 359.97438 * 9 8 7 12 12 C 1.47017 * 125.64575 * 359.69146 * 11 9 8 13 13 C 1.54319 * 107.27504 * 180.96716 * 12 11 9 14 14 C 1.55158 * 102.86252 * 22.52956 * 13 12 11 15 15 H 1.08995 * 111.03604 * 82.38688 * 14 13 12 16 16 N 1.46897 * 111.00267 * 206.23046 * 14 13 12 17 17 C 1.46900 * 110.99906 * 297.94960 * 16 14 13 18 18 C 1.53238 * 109.33907 * 172.74963 * 17 16 14 19 19 N 1.47079 * 108.52449 * 53.82778 * 18 17 16 20 20 C 1.36936 * 120.88222 * 128.83400 * 19 18 17 21 21 H 1.07998 * 120.00115 * 333.49001 * 20 19 18 22 22 C 1.38812 * 120.00105 * 153.49104 * 20 19 18 23 23 N 1.31614 * 120.00520 * 159.44545 * 22 20 19 24 24 Si 1.86807 * 119.99686 * 339.44347 * 22 20 19 25 25 H 1.48496 * 109.47024 * 91.97940 * 24 22 20 26 26 H 1.48500 * 109.47099 * 211.97577 * 24 22 20 27 27 H 1.48499 * 109.47427 * 331.97613 * 24 22 20 28 28 C 1.47086 * 118.23803 * 308.81687 * 19 18 17 29 29 C 1.46905 * 111.00029 * 173.64659 * 16 14 13 30 30 C 1.47416 * 125.64886 * 180.02562 * 11 9 8 31 31 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47175 * 300.00468 * 1 2 3 33 33 H 1.09000 * 109.47026 * 59.99930 * 1 2 3 34 34 H 1.08989 * 109.47275 * 239.99707 * 2 1 3 35 35 H 1.08998 * 109.46597 * 119.99764 * 2 1 3 36 36 H 1.07999 * 126.29169 * 179.84332 * 7 5 4 37 37 H 1.09002 * 109.89031 * 300.51342 * 12 11 9 38 38 H 1.09002 * 109.88471 * 61.68334 * 12 11 9 39 39 H 1.08996 * 110.92232 * 264.11370 * 13 12 11 40 40 H 1.09005 * 110.58984 * 140.78673 * 13 12 11 41 41 H 1.09001 * 109.49123 * 292.70277 * 17 16 14 42 42 H 1.09001 * 109.49299 * 52.78978 * 17 16 14 43 43 H 1.08998 * 109.62754 * 294.11863 * 18 17 16 44 44 H 1.08997 * 109.79133 * 173.63525 * 18 17 16 45 45 H 0.97003 * 120.00472 * 179.97438 * 23 22 20 46 46 H 1.08998 * 109.62507 * 291.47318 * 28 19 18 47 47 H 1.09003 * 109.79019 * 170.98415 * 28 19 18 48 48 H 1.09001 * 109.49050 * 307.21657 * 29 16 14 49 49 H 1.09000 * 109.48737 * 67.29005 * 29 16 14 50 50 H 1.09006 * 110.36977 * 274.67685 * 30 11 9 51 51 H 1.09005 * 110.36646 * 36.88654 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1434 -1.0555 5 7 2.7289 3.4063 -0.6442 6 1 2.9824 4.1367 -1.2301 7 6 2.7452 3.4354 0.6980 8 6 2.3091 2.2036 1.1432 9 6 2.1600 1.7836 2.5486 10 8 1.7633 0.6641 2.8098 11 7 2.4636 2.6403 3.5438 12 6 2.9574 4.0142 3.3708 13 6 3.1881 4.5991 4.7801 14 6 3.3583 3.3304 5.6570 15 1 4.3778 2.9492 5.5998 16 7 2.9765 3.5980 7.0500 17 6 3.8398 4.6275 7.6439 18 6 3.2997 5.0067 9.0269 19 7 3.1557 3.7797 9.8249 20 6 3.6937 3.6910 11.0810 21 1 4.5531 4.2898 11.3439 22 6 3.1344 2.8313 12.0165 23 7 3.8440 2.4324 13.0507 24 14 1.3745 2.2407 11.8075 25 1 1.3682 0.9599 11.0561 26 1 0.7599 2.0339 13.1434 27 1 0.5965 3.2588 11.0569 28 6 2.4182 2.6504 9.2381 29 6 2.9931 2.3640 7.8468 30 6 2.3620 2.3525 4.9860 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0406 4.2705 1.3157 37 1 3.8942 4.0042 2.8137 38 1 2.2149 4.6110 2.8410 39 1 2.3257 5.1804 5.1062 40 1 4.0935 5.2058 4.7998 41 1 4.8534 4.2392 7.7434 42 1 3.8488 5.5090 7.0027 43 1 2.3287 5.4904 8.9207 44 1 3.9947 5.6855 9.5212 45 1 3.4530 1.8320 13.7046 46 1 1.3625 2.9077 9.1522 47 1 2.5301 1.7687 9.8691 48 1 2.3881 1.6038 7.3526 49 1 4.0185 2.0072 7.9433 50 1 1.3485 2.5415 5.3402 51 1 2.6471 1.3199 5.1878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052048391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:08 Heat of formation + Delta-G solvation = 88.089435 kcal Electronic energy + Delta-G solvation = -31178.919331 eV Core-core repulsion = 27116.185147 eV Total energy + Delta-G solvation = -4062.734184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.87206 -40.02800 -38.49763 -37.01190 -34.62676 -34.24974 -31.98280 -31.09602 -30.91813 -30.63832 -30.09885 -28.55779 -26.17949 -24.55384 -24.31558 -23.34942 -22.66721 -21.81839 -21.00309 -20.31805 -19.66240 -19.48263 -17.83428 -17.15052 -16.93944 -16.38684 -15.72349 -15.38578 -15.12715 -15.06064 -14.58428 -14.45326 -14.28945 -14.10777 -14.03431 -13.97897 -13.74873 -13.42132 -12.97230 -12.85839 -12.61419 -12.53057 -12.49500 -12.09950 -11.78567 -11.76696 -11.61025 -11.41276 -11.30345 -11.09747 -11.05062 -10.87653 -10.59205 -10.30003 -10.05934 -9.99501 -9.90746 -9.80889 -9.45994 -9.22385 -8.80097 -8.65988 -8.11263 -6.97497 -5.94818 -3.30405 1.11745 1.82280 2.25584 2.78709 3.21114 3.34011 3.50613 3.54402 4.00224 4.06317 4.19309 4.28004 4.40264 4.53954 4.71898 4.73932 4.82751 4.95142 4.99939 5.07498 5.13205 5.18360 5.22259 5.23071 5.32074 5.37403 5.56471 5.61761 5.67414 5.70126 5.75160 5.80260 5.87430 5.90304 5.93475 5.99736 6.02508 6.04757 6.11620 6.16422 6.21663 6.34941 6.55985 6.63463 6.66429 6.85638 7.13342 7.31161 7.34498 7.40089 7.93605 8.07735 8.32026 8.92482 9.71610 10.10449 11.21099 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.002292 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.721111 B =12211.283897 C =13201.226117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.140 3.860 4 N -0.299 5.299 5 N -0.463 5.463 6 H 0.444 0.556 7 C 0.091 3.909 8 C -0.280 4.280 9 C 0.608 3.392 10 O -0.536 6.536 11 N -0.615 5.615 12 C 0.095 3.905 13 C -0.124 4.124 14 C 0.069 3.931 15 H 0.054 0.946 16 N -0.523 5.523 17 C 0.043 3.957 18 C 0.152 3.848 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.085 0.915 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.883 3.117 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.269 1.269 28 C 0.130 3.870 29 C 0.040 3.960 30 C 0.118 3.882 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.263 0.737 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 4.610 -28.606 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.028 4.028 4 N -0.121 5.121 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.061 4.061 8 C -0.295 4.295 9 C 0.397 3.603 10 O -0.414 6.414 11 N -0.350 5.350 12 C -0.029 4.029 13 C -0.162 4.162 14 C -0.041 4.041 15 H 0.072 0.928 16 N -0.248 5.248 17 C -0.086 4.086 18 C 0.026 3.974 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.103 0.897 22 C -0.177 4.177 23 N -0.552 5.552 24 Si 0.714 3.286 25 H -0.215 1.215 26 H -0.232 1.232 27 H -0.194 1.194 28 C 0.004 3.996 29 C -0.089 4.089 30 C -0.005 4.005 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.212 0.788 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.439 4.082 -29.614 29.993 hybrid contribution 0.146 -0.042 0.574 0.594 sum -2.293 4.041 -29.039 29.408 Atomic orbital electron populations 1.21617 0.93850 1.02228 1.01974 1.20148 0.96637 0.87928 1.04228 1.22498 0.94761 0.97033 0.88538 1.77168 1.21925 0.90569 1.22475 1.46159 1.51806 1.13202 1.05565 0.71172 1.23936 0.97124 0.99409 0.85638 1.20228 1.19336 0.95636 0.94345 1.16844 0.76973 0.83656 0.82779 1.90768 1.47144 1.19651 1.83828 1.48191 1.66344 1.13841 1.06582 1.22342 0.98587 0.83169 0.98785 1.22728 1.03579 0.97564 0.92336 1.22745 0.96771 0.94834 0.89753 0.92794 1.61981 1.52914 1.10226 0.99674 1.22642 0.94424 0.93999 0.97541 1.20994 0.98379 0.89130 0.88899 1.44412 1.64380 1.09278 1.15202 1.18909 1.08957 1.24555 0.86371 0.89716 1.25266 0.97981 0.98775 0.95675 1.69832 1.35916 1.34940 1.14547 0.86954 0.87428 0.78494 0.75733 1.21543 1.23209 1.19430 1.21427 0.94727 0.92042 0.91359 1.22696 1.00037 0.90439 0.95703 1.22213 1.00403 0.99528 0.78306 0.91758 0.92135 0.93000 0.90547 0.87997 0.78793 0.91260 0.91028 0.88981 0.89992 0.94827 0.91367 0.95211 0.91646 0.92762 0.94883 0.90691 0.91382 0.94440 0.90076 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.05 -0.50 5.97 -27.88 -0.17 -0.67 16 3 C 0.14 1.53 6.52 -82.02 -0.53 1.00 16 4 N -0.30 -3.05 12.63 33.90 0.43 -2.62 16 5 N -0.46 -3.06 7.29 30.85 0.22 -2.83 16 6 H 0.44 1.25 8.96 -182.72 -1.64 -0.39 16 7 C 0.09 0.62 10.50 -16.56 -0.17 0.44 16 8 C -0.28 -2.95 6.10 -105.06 -0.64 -3.59 16 9 C 0.61 7.68 7.85 -12.52 -0.10 7.58 16 10 O -0.54 -8.44 15.17 5.27 0.08 -8.36 16 11 N -0.62 -6.67 3.33 -171.80 -0.57 -7.25 16 12 C 0.09 0.66 4.98 -3.07 -0.02 0.65 16 13 C -0.12 -1.02 5.35 -24.90 -0.13 -1.15 16 14 C 0.07 0.80 2.71 -65.57 -0.18 0.63 16 15 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 16 N -0.52 -7.81 4.53 -223.79 -1.01 -8.82 16 17 C 0.04 0.65 5.48 -3.70 -0.02 0.63 16 18 C 0.15 2.87 6.69 -3.60 -0.02 2.85 16 19 N -0.61 -14.27 2.82 -172.01 -0.48 -14.75 16 20 C -0.26 -7.19 10.08 -15.06 -0.15 -7.34 16 21 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 22 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 23 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 24 Si 0.88 22.42 24.31 -169.99 -4.13 18.29 16 25 H -0.29 -7.04 6.58 56.52 0.37 -6.66 16 26 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 27 H -0.27 -6.75 6.61 56.52 0.37 -6.38 16 28 C 0.13 2.83 4.35 -3.60 -0.02 2.81 16 29 C 0.04 0.71 5.48 -3.70 -0.02 0.69 16 30 C 0.12 1.45 5.32 -2.54 -0.01 1.44 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.66 8.14 -51.94 -0.42 0.24 16 35 H 0.10 1.16 6.55 -51.93 -0.34 0.82 16 36 H 0.20 0.64 4.42 -52.49 -0.23 0.41 16 37 H 0.07 0.36 6.87 -51.93 -0.36 0.00 16 38 H 0.07 0.37 6.98 -51.93 -0.36 0.01 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.55 7.94 -51.93 -0.41 0.14 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.82 6.87 -51.93 -0.36 0.46 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 47 H 0.08 1.78 4.61 -51.93 -0.24 1.54 16 48 H 0.07 1.07 6.79 -51.93 -0.35 0.72 16 49 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -35.10 387.25 -10.08 -45.18 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -9.31 Total: -3.20 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.91 Total: 5.58 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.64 Total: -63.32 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.10 -10.08 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052048391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.265 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds